Fluorescence spectroscopy as a promising tool for a polyphasic approach to pseudomonad taxonomy

Current Microbiology

Volumn 58, Issue 1, 2009, Pages 39-46

  Tourkya, Belal ^a   Boubellouta, Tahar ^a   Dufour, Eric ^a   Leriche, Françoise ^a  

^a ENITA de Clermont Ferrand   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AROMATIC AMINO ACID; DNA; NUCLEIC ACID; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; RIBOSOME RNA; TRYPTOPHAN;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BURKHOLDERIA; CONTROLLED STUDY; FLUORESCENCE SPECTROSCOPY; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PSEUDOMONAS; STENOTROPHOMONAS; XANTHOMONAS;

AMINO ACIDS, AROMATIC; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; GENOTYPE; NAD; PSEUDOMONAS; SENSITIVITY AND SPECIFICITY; SPECTROMETRY, FLUORESCENCE; TRYPTOPHAN;

BACTERIA (MICROORGANISMS); BURKHOLDERIA; PSEUDOMONAS; PSEUDOMONAS CHLORORAPHIS; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS FRAGI; PSEUDOMONAS LUNDENSIS; PSEUDOMONAS PSEUDOALCALIGENES; PSEUDOMONAS PUTIDA; PSEUDOMONAS STUTZERI; PSEUDOMONAS TAETROLENS; STENOTROPHOMONAS; XANTHOMONAS;

EID: 58149290014     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-008-9263-0     Document Type: Article

References (36)

1. L Ait Tayeb E Ageron F Grimont PAD Grimont 2005 Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates Res Microbiol 156 763 773
2. MS Ammor 2007 Recent advances in the use of intrinsic fluorescence for bacterial identification and characterization J Fluoresc 17 455 459
3. Y Anzai Y Kudo H Oyaizu 1997 The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera Int J Syst Bacteriol 47 249 251
4. Y Anzai H Kim JY Park H Wakabayashi H Oyaizu 2000 Phylogenetic affiliation of the Pseudomonads based on 16S rRNA sequence Int J Syst Evol Microbiol 50 1563 1589
5. D Bertrand CNG Scotter 1992 Application of multivariate analyses to NIR spectra of gelatinized starch Appl Spectrosc 46 1420 1425
6. H Bhatta EM Goldys RP Learmonth 2006 Use of fluorescence spectroscopy to differentiate yeast and bacterial cells Appl Microbiol Biotechnol 71 121 126
7. J Bodilis S Barray 2006 Molecular evolution of the major outer-membrane protein gene (oprF) of Pseudomonas Microbiology 152 1075 1088
8. E Bossis P Lemanceau X Latour L Gardan 2000 The taxonomy of Pseudomonas fluorescens and Pseudomonas putida: current status and need for revision Agronomie 20 51 63
9. Cantor CR, Schimmel PR (1980) Other optical techniques. In: Biophysical chemistry. Part 2: techniques for the study of biological structure and function. W. H. Freeman, New York, pp 409-480
10. F Chen Q Xia L-K Ju 2003 Aerobic denitrification of Pseudomonas aeruginosa monitored by online NAD(P)H fluorescence Appl Environ Microbiol 69 6715 6722
11. KJ Coates JC Beattie IR Morgan PR Widders 1995 The contribution of carcass contamination and the boning process to microbial spoilage of aerobically stored pork Food Microbiol 12 49 54
12. D De Vos C Bouton A Sarniguet P De Vos M Vauterin P Cornelis 1998 Sequence diversity of the oprI gene, coding for major outer membrane lipoprotein I, among rRNA group I pseudomonads J Bacteriol 180 6551 6556
13. P De vos A Van Landschoot P Segers R Tytgat M Gillis M Bauwens R Rossau B Pot K Kerstars P Lizzaraga J De Ley 1989 Genotypic relationships and taxonomic localization of unclassified Pseudomonas and Pseudomonas-like strains by deoxyribonucleic acid: ribosomal ribonucleic acid hybridizations Int J Syst Bacteriol 39 35 49
14. C Estes A Duncan B Wade C Lloyd W Ellis L Powers 2003 Reagentless detection of microorganisms by intrinsic fluorescence Biosens Bioelectron 18 511 519
15. Z Filip S Hermann 2001 An attempt to differentiate Pseudomonas spp. and other soil bacteria by FT-IR spectroscopy Eur J Soil Biol 37 137 143
16. HE Giana L Silveira RA Zângaro MTT Pacheco 2003 Rapid identification of bacterial species by fluorescence spectroscopy and classification through principal components analysis J Fluoresc 13 489 493
17. S Herbert N Mouhous Riou MF Devaux A Riaublanc B Bouchet DJ Gallant E Dufour 2000 Monitoring the identity and the structure of soft cheeses by fluorescence spectroscopy Lait 80 621 634
18. E Hilario TR Buckley JM Young 2004 Improved resolution on the phylogenetic relationships among Pseudomonas by the combined analysis of atp D, car A, rec A and 16S rDNA Antonie van Leeuwenhoek 86 51 64
19. Holt JG, Krieg NR, Sneath PHA, Staley JT, Williams ST (eds) (1994) Bergey's manual of systematic bacteriology, 9th edn. Williams & Wilkins, Baltimore, MD
20. Jolliffe IT (1986) Principal component analysis. Springer, New York
21. K Kersters W Ludwig M Vancanneyt P De Vos M Gillis K-H Scheleifer 1996 Recent changes in the classification of the pseudomonads: an overview Syst Appl Microbiol 19 465 477
22. Lakowicz JR (1999) Principles of fluorescence spectroscopy, 2nd edn. Plenum, New York
23. J Lalucat A Bennasar R Bosch E Garcia-Valdes NJ Palleroni 2006 Biology of Pseudomonas stutzeri Microbiol Mol Biol Rev 70 510 547
24. L Leblanc E Dufour 2002 Monitoring the identity of bacteria using their intrinsic fluorescence FEMS Microbiol Lett 211 147 153
25. F Leriche A Bordessoules K Fayolle R Karoui K Laval L Leblanc E Dufour 2004 Alteration of raw-milk cheese by Pseudomonas spp.: monitoring the sources of contamination using fluorescence spectroscopy and metabolic profiling J Microbiol Methods 59 33 41
26. JB Lyczak CL Cannon GB Pier 2000 Establishment of Pseudomonas aeruginosa infection: lessons from a versatile opportunist Microb Infect 2 1051 1060
27. G Mark JP Morrissey P Higgins F O'Gara 2006 Molecular-based strategies to exploit Pseudomonas biocontrol strains for environmental biotechnology applications FEMS Microbiol Ecol 56 167 177
28. J-M Meyer VA Geoffroy N Baida L Gardan D Izard P Lemanceau W Achouak NJ Palleroni 2002 Siderophore typing, a powerful tool for the identification of fluorescent and nonfluorescent pseudomonads Appl Environ Microbiol 68 2745 2753
29. ERB Moore M Mau A Arnscheidt EC Bottger RA Hutson MD Collins Y Van de Peer R DeWachter KN Timmis 1996 The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships Syst Appl Microbiol 19 478 492
30. M Quezada G Buitron I Moreno-Andrade G Moreno LM Lopez-Marin 2007 The use of fatty acid methyl esters as biomarkers to determine aerobic, facultatively aerobic and anaerobic communities in wastewater treatment systems FEMS Microbiol Lett 266 75 82
31. P Robert MF Devaux D Bertrand 1996 Beyond prediction: extracting relevant information from near infrared spectra J Near Infrared Spectro 4 75 84
32. AJ Spiers A Buckling PB Rainey 2000 The causes of Pseudomonas diversity Microbiology 146 2345 2350
33. DM Weller 2007 Pseudomonas biocontrol agents of soilborne pathogens: looking back over 30 years Phytopathology 97 250 256
34. PR Widders KJ Coates S Warner JC Beattie IR Morgan MW Hickey 1995 Controlling microbial contamination on beef and lamb meat during processing Aust Vet J 72 208 211
35. F Widmer RJ Seidler PM Gillevet LS Watrud GD Di Giovanni 1998 A highly selective PCR protocol for detecting 16S rRNA genes of the genus Pseudomonas (sensu stricto) in environmental samples Appl Environ Microbiol 64 2545 2553
36. S Yamamoto H Kasai DL Arnold RW Jackson A Vivian S Harayama 2000 Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes Microbiology 146 2385 2394