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Volumn 20, Issue 1, 2000, Pages 51-63

The taxonomy of Pseudomonas fluorescens and Pseudomonas putida: Current status and need for revision

Author keywords

Genotypic characterization; P. putida; Phenotypic characterization; Pseudomonas fluorescens; Taxonomy

Indexed keywords

BACTERIUM IDENTIFICATION; BACTERIUM TAXONOMY; CONSENSUS SEQUENCE; DNA DNA HYBRIDIZATION; GENOTYPE; PHENOTYPING; RIBOSOMAL DNA;

EID: 0034011872     PISSN: 02495627     EISSN: None     Source Type: Journal    
DOI: 10.1051/agro:2000112     Document Type: Article
Times cited : (106)

References (57)
  • 1
    • 0022514266 scopus 로고
    • Pseudomonas fluorescens biovar V: Its resolution into distinct groups and relationships of these groups to other P. fluorescens biovars, to P. putida, and to psychrotrophic pseudomonads associated with food spoliage
    • Barrett E.J., Solanes R.E., Tang J.S., Palleroni N.J., Pseudomonas fluorescens biovar V: its resolution into distinct groups and relationships of these groups to other P. fluorescens biovars, to P. putida, and to psychrotrophic pseudomonads associated with food spoliage, J. Gen. Microbiol. 132 (1986) 2709-2721.
    • (1986) J. Gen. Microbiol. , vol.132 , pp. 2709-2721
    • Barrett, E.J.1    Solanes, R.E.2    Tang, J.S.3    Palleroni, N.J.4
  • 3
    • 0030446291 scopus 로고    scopus 로고
    • Taxonomic diversity of pseudomonads revealed by computer-interpretation of ribotyping data
    • Brosch R., Lefèvre M., Grimont F., Grimont P.A.D., Taxonomic diversity of pseudomonads revealed by computer-interpretation of ribotyping data, Syst. Appl. Microbiol. 19 (1996) 541-555.
    • (1996) Syst. Appl. Microbiol. , vol.19 , pp. 541-555
    • Brosch, R.1    Lefèvre, M.2    Grimont, F.3    Grimont, P.A.D.4
  • 6
    • 0029063921 scopus 로고
    • Influence of two plant species (flax and tomato) on the distribution of nitrogen dissimilative abilities within fluorescent Pseudomonas spp
    • Clays-Josserand A., Lemanceau P., Philippot L., Lensi R., Influence of two plant species (flax and tomato) on the distribution of nitrogen dissimilative abilities within fluorescent Pseudomonas spp., Appl. Environ. Microbiol. 61 (1995) 1745-1749.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1745-1749
    • Clays-Josserand, A.1    Lemanceau, P.2    Philippot, L.3    Lensi, R.4
  • 7
    • 0019802372 scopus 로고
    • Une méthode de choix des caractères d'identification basée sur le théorème de Bayes et la mesure de l'information
    • Descamp P., Véron M., Une méthode de choix des caractères d'identification basée sur le théorème de Bayes et la mesure de l'information, Ann. Microb. 132B (1981) 157-170.
    • (1981) Ann. Microb. , vol.132 B , pp. 157-170
    • Descamp, P.1    Véron, M.2
  • 8
    • 84980283994 scopus 로고
    • Caractérisation, variabilité et sélection des souches bénéfiques de Pseudomonas fluorescens et P. putida
    • Digat B., Gardan L., Caractérisation, variabilité et sélection des souches bénéfiques de Pseudomonas fluorescens et P. putida, EPPO Bull. 17 (1987) 559-568.
    • (1987) EPPO Bull. , vol.17 , pp. 559-568
    • Digat, B.1    Gardan, L.2
  • 9
    • 0028574182 scopus 로고
    • Comparison of ribotyping analysis and numerical taxonomy studies of Pseudomonas putida biovar A
    • Elomari M., Izard D., Vincent D., Coroler L., Leclerc H., Comparison of ribotyping analysis and numerical taxonomy studies of Pseudomonas putida biovar A, Syst. Appl. Microbiol. 17 (1994) 361-369.
    • (1994) Syst. Appl. Microbiol. , vol.17 , pp. 361-369
    • Elomari, M.1    Izard, D.2    Vincent, D.3    Coroler, L.4    Leclerc, H.5
  • 10
    • 0030898617 scopus 로고    scopus 로고
    • Metabolic and genotypic fingerprinting of fluorescent pseudomonads associated with the Douglas Fir-Laccaria bicolor mycorrhizosphere
    • Frey P., Frey-Klett P., Garbaye J., Berge O., Heulin T., Metabolic and genotypic fingerprinting of fluorescent pseudomonads associated with the Douglas Fir-Laccaria bicolor mycorrhizosphere, Appl. Environ. Microbiol. 63 (1997) 1852-1860.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1852-1860
    • Frey, P.1    Frey-Klett, P.2    Garbaye, J.3    Berge, O.4    Heulin, T.5
  • 11
    • 0026757044 scopus 로고
    • DNA relatedness among pathovar strains of Pseudomonas syringae pv. savastanoi Janse (1982) and proposal of Pseudomonas savastanoi sp. nov.
    • Gardan L., Bollet C., Abu Ghorrah M., Grimont F., Grimont P.A.D., DNA relatedness among pathovar strains of Pseudomonas syringae pv. savastanoi Janse (1982) and proposal of Pseudomonas savastanoi sp. nov., Int. J. Syst. Bacteriol. 42 (1992) 606-612.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 606-612
    • Gardan, L.1    Bollet, C.2    Abu Ghorrah, M.3    Grimont, F.4    Grimont, P.A.D.5
  • 13
    • 0021263195 scopus 로고
    • Use of DNA hybridization values to construct three-dimentional models of fluorescent pseudomonad relationships
    • Hildebrand D.C., Huisman O.C., Schroth M.N., Use of DNA hybridization values to construct three-dimentional models of fluorescent pseudomonad relationships, Canad. J. Microbiol. 30 (1983) 306-315.
    • (1983) Canad. J. Microbiol. , vol.30 , pp. 306-315
    • Hildebrand, D.C.1    Huisman, O.C.2    Schroth, M.N.3
  • 14
    • 2042541031 scopus 로고
    • Pseudomonas in the late twentieth century
    • Galli E., Silver S., Witholt B. (Eds.), Am. Soc. Microbiol., Washington, DC
    • Holloway B., Pseudomonas in the late twentieth century, in: Galli E., Silver S., Witholt B. (Eds.), Pseudomonas molecular biology and biotechnology, Am. Soc. Microbiol., Washington, DC, 1992, pp. 1-8.
    • (1992) Pseudomonas Molecular Biology and Biotechnology , pp. 1-8
    • Holloway, B.1
  • 16
    • 0028973071 scopus 로고
    • Review of issues related to the quantification of bacteria from the phyllosphere
    • Jacques M.A., Morris C.A., Review of issues related to the quantification of bacteria from the phyllosphere, FEMS Microbiol. Ecol. 18 (1995) 1-14.
    • (1995) FEMS Microbiol. Ecol. , vol.18 , pp. 1-14
    • Jacques, M.A.1    Morris, C.A.2
  • 17
    • 0027092920 scopus 로고
    • Classification of fluorescent soft rot Pseudomonas bacteria, including P. marginalis strains, using whole cell fatty acid analysis
    • Janse J.D., Derks J.H.J., Spit B.E., Van Der Tuin W.R., Classification of fluorescent soft rot Pseudomonas bacteria, including P. marginalis strains, using whole cell fatty acid analysis, Syst. Appl. Microbiol. 15 (1992) 538-553.
    • (1992) Syst. Appl. Microbiol. , vol.15 , pp. 538-553
    • Janse, J.D.1    Derks, J.H.J.2    Spit, B.E.3    Van Der Tuin, W.R.4
  • 19
    • 0024320615 scopus 로고
    • Desoxyribonucleic acid similarities among Pseudomonas species
    • Johnson J., Palleroni N.J., Desoxyribonucleic acid similarities among Pseudomonas species, Int. J. Syst. Bacteriol. 39 (1989) 230-235.
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 230-235
    • Johnson, J.1    Palleroni, N.J.2
  • 20
    • 0033001947 scopus 로고    scopus 로고
    • Diversity of Pseudomonas strains isolated with King's B and Gould's S1 agar determined by repetitive extragenic palindromic-polymerase chain reaction, 16S rDNA sequencing and Fourier transform infrared spectrroscopy characterisation
    • Johnsen K., Nielsen P., Diversity of Pseudomonas strains isolated with King's B and Gould's S1 agar determined by repetitive extragenic palindromic-polymerase chain reaction, 16S rDNA sequencing and Fourier transform infrared spectrroscopy characterisation, FEMS Microb. Lett. 173 (1999) 155-162.
    • (1999) FEMS Microb. Lett. , vol.173 , pp. 155-162
    • Johnsen, K.1    Nielsen, P.2
  • 21
    • 0029739072 scopus 로고    scopus 로고
    • Phenotypic and genotypic characterization of phenanthrene-degrading fluorescent Pseudomonas biovars
    • Johnsen K., Andersen S., Jacobsen C.S., Phenotypic and genotypic characterization of phenanthrene-degrading fluorescent Pseudomonas biovars, Appl. Environ. Microbiol. 62 (1996) 3818-3825.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3818-3825
    • Johnsen, K.1    Andersen, S.2    Jacobsen, C.S.3
  • 22
    • 0030070616 scopus 로고    scopus 로고
    • Conservation of the 2,4-diacetylphloroglucinol biosynthesis locus among fluorescent Pseudomonas strains from diverse geographic locations
    • Keel C., Weller D.M., Natsh A., Defago G., Cook R.J., Thomashow L.S., Conservation of the 2,4-diacetylphloroglucinol biosynthesis locus among fluorescent Pseudomonas strains from diverse geographic locations, Appl. Environ. Microbiol. 62 (1996) 552-563.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 552-563
    • Keel, C.1    Weller, D.M.2    Natsh, A.3    Defago, G.4    Cook, R.J.5    Thomashow, L.S.6
  • 24
    • 0028519166 scopus 로고
    • Fluorescent Pseudomonas species categorized by using polymerase chain reaction (PCR)/restriction fragment analysis of 16S rDNA
    • Laguerre G., Rigottier-Gois L., Lemanceau P., Fluorescent Pseudomonas species categorized by using polymerase chain reaction (PCR)/restriction fragment analysis of 16S rDNA, Mol. Ecol. 3 (1994) 479-487.
    • (1994) Mol. Ecol. , vol.3 , pp. 479-487
    • Laguerre, G.1    Rigottier-Gois, L.2    Lemanceau, P.3
  • 25
    • 0031433014 scopus 로고    scopus 로고
    • Carbon and energy metabolism of oxidase-positive saprophytic fluorescent Pseudomonas spp.
    • Latour X., Lemanceau P., Carbon and energy metabolism of oxidase-positive saprophytic fluorescent Pseudomonas spp., Agronomie 17 (1997) 427-443.
    • (1997) Agronomie , vol.17 , pp. 427-443
    • Latour, X.1    Lemanceau, P.2
  • 26
    • 0029960564 scopus 로고    scopus 로고
    • The composition of fluorescent pseudomonad populations associated with roots is influenced by plant and soil type
    • Latour X., Corberand T., Laguerre G., Lemanceau P., The composition of fluorescent pseudomonad populations associated with roots is influenced by plant and soil type, Appl. Environ. Microbiol. 62 (1996) 2449-2556.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2449-2556
    • Latour, X.1    Corberand, T.2    Laguerre, G.3    Lemanceau, P.4
  • 27
    • 0032856818 scopus 로고    scopus 로고
    • The establishment of an introduced community of fluorescent pseudomonads in the soil and in the rhizosphere is affected by the soil type
    • [271 Latour X., Philippot L., Corberand T., Lemanceau P., The establishment of an introduced community of fluorescent pseudomonads in the soil and in the rhizosphere is affected by the soil type, FEMS Microbiol. Ecol. 30 (1999) 163-170.
    • (1999) FEMS Microbiol. Ecol. , vol.30 , pp. 163-170
    • Latour, X.1    Philippot, L.2    Corberand, T.3    Lemanceau, P.4
  • 28
    • 0013980517 scopus 로고
    • A determinative scheme for the fluorescent plant pathogenic Pseudomonas
    • Lelliott R.A., Billing E., Hayward A.C., A determinative scheme for the fluorescent plant pathogenic Pseudomonas, J. Appl. Bacteriol. 29 (1966) 470-489.
    • (1966) J. Appl. Bacteriol. , vol.29 , pp. 470-489
    • Lelliott, R.A.1    Billing, E.2    Hayward, A.C.3
  • 29
    • 0027036049 scopus 로고
    • Beneficial effects of rhizobacteria on plants: Example of fluorescent Pseudomonas spp.
    • Lemanceau P., Beneficial effects of rhizobacteria on plants: example of fluorescent Pseudomonas spp., Agronomie 12 (1992) 413-437.
    • (1992) Agronomie , vol.12 , pp. 413-437
    • Lemanceau, P.1
  • 30
    • 0028985740 scopus 로고
    • Effect of two plant species, flax (Linum usitatissinum L.) and tomato (Lycopersicon esculentum Mill.) on the diversity of soilborne populations of fluorescent pseudomonads
    • Lemanceau P., Corberand T., Gardan L., Latour X., Laguerre G., Boeufgras J.M., Alabouvette C., Effect of two plant species, flax (Linum usitatissinum L.) and tomato (Lycopersicon esculentum Mill.) on the diversity of soilborne populations of fluorescent pseudomonads, Appl. Environ. Microbiol. 61 (1995) 1004-1012.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1004-1012
    • Lemanceau, P.1    Corberand, T.2    Gardan, L.3    Latour, X.4    Laguerre, G.5    Boeufgras, J.M.6    Alabouvette, C.7
  • 33
    • 0022616989 scopus 로고
    • Phenotypically based taxonomy of psychrotrophic Pseudomonas isolated from spoiled meat, water, and soil
    • Molin M., Ternström A., Phenotypically based taxonomy of psychrotrophic Pseudomonas isolated from spoiled meat, water, and soil, Int. J. Syst. Bacteriol. 36 (1986) 257-274.
    • (1986) Int. J. Syst. Bacteriol. , vol.36 , pp. 257-274
    • Molin, M.1    Ternström, A.2
  • 34
    • 0030459930 scopus 로고    scopus 로고
    • The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships
    • Moore E.R.B., Mau M., Arnscheidt A., Böttger E.C., Hutson R.A., Collins M.D., Van de Peer Y., De Wachter R., Timmis K.N., The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships, Syst. Appl. Microbiol. 19 (1996) 478-492.
    • (1996) Syst. Appl. Microbiol. , vol.19 , pp. 478-492
    • Moore, E.R.B.1    Mau, M.2    Arnscheidt, A.3    Böttger, E.C.4    Hutson, R.A.5    Collins, M.D.6    Van De Peer, Y.7    De Wachter, R.8    Timmis, K.N.9
  • 35
    • 0000803252 scopus 로고
    • Gram-negative aerobic rods and cocci: Family I Pseudomonadaceae
    • Krieg N.R., Holt J.G. (Eds.), William and Wilkins, Baltimore
    • Palleroni N.J., Gram-negative aerobic rods and cocci: Family I Pseudomonadaceae, in: Krieg N.R., Holt J.G. (Eds.), Bergey's manual of bacteriology , William and Wilkins, Baltimore, 1984, pp. 141-168.
    • (1984) Bergey's Manual of Bacteriology , pp. 141-168
    • Palleroni, N.J.1
  • 36
    • 0000311714 scopus 로고
    • Human- and Animal-Pathogenic
    • Ballows A., Trüper H.G., Dworkin M., Harder W., Schleifer KH (Eds.), Springer Verlag, New-York
    • Palleroni N.J., Human- and Animal-Pathogenic, in: Ballows A., Trüper H.G., Dworkin M., Harder W., Schleifer KH (Eds.), The Prokaryotes, Springer Verlag, New-York, 1992, pp. 3086-3103.
    • (1992) The Prokaryotes , pp. 3086-3103
    • Palleroni, N.J.1
  • 37
    • 0000311716 scopus 로고
    • Introduction to the family Pseudomonadaceae
    • Ballows A., Trüper H.G., Dworkin M., Harder W., Schleifer K.H. (Eds.), Springer Verlag, New-York
    • Palleroni N.J., Introduction to the family Pseudomonadaceae, in: Ballows A., Trüper H.G., Dworkin M., Harder W., Schleifer K.H. (Eds.), The Prokaryotes, Springer Verlag, New-York, 1992, pp. 3071-3085.
    • (1992) The Prokaryotes , pp. 3071-3085
    • Palleroni, N.J.1
  • 38
  • 40
    • 0031884447 scopus 로고    scopus 로고
    • Natural plant protection by 2,4-diacetylphloroglucinol-producing Pseudomonas spp. in take-all decline soils
    • Raaijmakers J.M., Weller D.M., Natural plant protection by 2,4-diacetylphloroglucinol-producing Pseudomonas spp. in take-all decline soils, M P M I 11 (1998) 144-152.
    • (1998) M P M I , vol.11 , pp. 144-152
    • Raaijmakers, J.M.1    Weller, D.M.2
  • 41
    • 0028000788 scopus 로고
    • Phenotypic and diversity of fluorescent pseudomonads isolated from field-grown sugar beet
    • Rainey P.B., Bailey M.J., Thompson I.P., Phenotypic and diversity of fluorescent pseudomonads isolated from field-grown sugar beet. Microbiology 140 (1994) 2315-2331.
    • (1994) Microbiology , vol.140 , pp. 2315-2331
    • Rainey, P.B.1    Bailey, M.J.2    Thompson, I.P.3
  • 42
    • 0002297064 scopus 로고
    • Nucleic acid probes for the identification and in situ detection of pseudomonads
    • Galli E., Silver S., Witholt B. (Eds.), Am. Soc. Microbiol., Washington, DC
    • Schleifer K.H., Amann R., Ludwig W., Rothemund C., Springer N., Dorn S., Nucleic acid probes for the identification and in situ detection of pseudomonads, in: Galli E., Silver S., Witholt B. (Eds.), Pseudomonas molecular biology and biotechnology, Am. Soc. Microbiol., Washington, DC, 1992, 127-134.
    • (1992) Pseudomonas Molecular Biology and Biotechnology , pp. 127-134
    • Schleifer, K.H.1    Amann, R.2    Ludwig, W.3    Rothemund, C.4    Springer, N.5    Dorn, S.6
  • 43
    • 0018692284 scopus 로고
    • Basic program for a significance test for two clusters in Euclidian spas as meas used by their over lab
    • Sneath P.H.A., Basic program for a significance test for two clusters in Euclidian spas as meas used by their over lab, Computers Geosci. 5 (1979) 143-155.
    • (1979) Computers Geosci. , vol.5 , pp. 143-155
    • Sneath, P.H.A.1
  • 45
    • 0019847241 scopus 로고
    • Numerical taxonomy of Pseudomonas based on published records of substrate utilization
    • Sneath P.H.A., Stevens M., Sackin M., Numerical taxonomy of Pseudomonas based on published records of substrate utilization, Antonie Van Leeuwenhoek 47 (1981) 423-448.
    • (1981) Antonie Van Leeuwenhoek , vol.47 , pp. 423-448
    • Sneath, P.H.A.1    Stevens, M.2    Sackin, M.3
  • 46
    • 0026634732 scopus 로고
    • Rapid identification of environmental isolates of Pseudomonas aeruginosa, P. fluorescens and P. putida by SDS PAGE analysis of whole-cell protein patterns
    • Sorensen J., Skouv J., Nybroe O., Rapid identification of environmental isolates of Pseudomonas aeruginosa, P. fluorescens and P. putida by SDS PAGE analysis of whole-cell protein patterns, FEMS Microbiol. Ecol. 101 (1991) 41-50.
    • (1991) FEMS Microbiol. Ecol. , vol.101 , pp. 41-50
    • Sorensen, J.1    Skouv, J.2    Nybroe, O.3
  • 47
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E., Goebel B.M., Taxonomic note: a place for DNA-DNA reassociation and rRNA sequence analysis in the present species definition in bacteriology, Int. J. Syst. Bacteriol. 44 (1994) 846-849.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 49
    • 0026554882 scopus 로고
    • Grouping of plant-pathogenic and some other Pseudomonas spp. by using cellular fatty acid profiles
    • Stead D.E., Grouping of plant-pathogenic and some other Pseudomonas spp. by using cellular fatty acid profiles, Int. J. Syst. Bacteriol. 42 (1992) 281-295.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 281-295
    • Stead, D.E.1
  • 50
    • 0025075155 scopus 로고
    • Numerical taxonomy of fluorescent Pseudomonas associated with tomato roots
    • Stenström I.M., Zakaria A., Terström A., Molin G., Numerical taxonomy of fluorescent Pseudomonas associated with tomato roots, Antonie Van Leeuwenhock 57 (1990) 223-236.
    • (1990) Antonie Van Leeuwenhock , vol.57 , pp. 223-236
    • Stenström, I.M.1    Zakaria, A.2    Terström, A.3    Molin, G.4
  • 52
    • 0028921693 scopus 로고
    • Root exudate-induced promoter activity in Pseudomonas fluorescens mutants in the wheat rhizosphere
    • Van Overbeek L.S., Van Elsas J.D., Root exudate-induced promoter activity in Pseudomonas fluorescens mutants in the wheat rhizosphere, Appl. Environ. Microbiol. 61 (1995) 890-898.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 890-898
    • Van Overbeek, L.S.1    Van Elsas, J.D.2
  • 54
    • 0000040324 scopus 로고
    • Biological control of soilborne plant pathogens in the rhizosphere with Bacteria
    • Weller D.M., Biological control of soilborne plant pathogens in the rhizosphere with Bacteria, Annu. Rev. Phytopathol. 26 (1988) 379-407.
    • (1988) Annu. Rev. Phytopathol. , vol.26 , pp. 379-407
    • Weller, D.M.1
  • 55
    • 0031813913 scopus 로고    scopus 로고
    • A highly selective PCR protocol for detecting 16S rRNA genes of the genus Pseudomonas (sensu stricto) in environmental samples
    • Widmer F., Seidler R.J., Gillevet P.M., Watrud L.S., Di Giovanni G.D., A highly selective PCR protocol for detecting 16S rRNA genes of the genus Pseudomonas (sensu stricto) in environmental samples, Appl. Environ. Microbiol. 64 (1998) 2545-2553.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2545-2553
    • Widmer, F.1    Seidler, R.J.2    Gillevet, P.M.3    Watrud, L.S.4    Di Giovanni, G.D.5
  • 56
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese C.R., Bacterial evolution, Microbiol. Rev. 51 (1987) 221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1


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