Prediction of integral membrane protein type by collocated hydrophobic amino acid pairs

Journal of Computational Chemistry

Volumn 30, Issue 1, 2009, Pages 163-172

  Chen, K E ^a   Jiang, Yingfu ^a   Du, L I ^a   Kurgan, Lukasz ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

Author keywords

Hydrophobic AA pairs; PSI BLAST profile; Support vector machine; Transmembrane protein; Type of integral membrane protein

Indexed keywords

AMINATION; AMINES; AMINO ACIDS; BEAM PLASMA INTERACTIONS; CELL MEMBRANES; FORECASTING; HYDROPHOBICITY; IMAGE RETRIEVAL; MEMBRANES; ORGANIC ACIDS; PROTEINS; RADIO TELESCOPES; SUPPORT VECTOR MACHINES;

HYDROPHOBIC AA PAIRS; PSI-BLAST PROFILE; SUPPORT VECTOR MACHINE; TRANSMEMBRANE PROTEIN; TYPE OF INTEGRAL MEMBRANE PROTEIN;

PROTEIN FOLDING;

AMINO ACID; MEMBRANE PROTEIN;

ALGORITHM; ARTICLE; AUTOMATED PATTERN RECOGNITION; BIOLOGY; CHEMICAL STRUCTURE; CHEMISTRY; HYDROPHOBICITY; METHODOLOGY; PROTEIN DATABASE; SEQUENCE ANALYSIS;

ALGORITHMS; AMINO ACIDS; COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; HYDROPHOBICITY; MEMBRANE PROTEINS; MODELS, MOLECULAR; PATTERN RECOGNITION, AUTOMATED; SEQUENCE ANALYSIS, PROTEIN;

EID: 58149269554     PISSN: 01928651     EISSN: 1096987X     Source Type: Journal    
DOI: 10.1002/jcc.21053     Document Type: Article

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