Single live-cell imaging for systems biology

Essays in Biochemistry

Volumn 45, Issue , 2008, Pages 121-133

  Mullassery, Dhanya ^a   Horton, Caroline A ^a   Wood, Christopher D ^a,b   White, Michael R H ^a  

^a UNIVERSITY OF LIVERPOOL   (United Kingdom)

^b INSTITUTO DE BIOTECNOLOGÍA   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

MAMMALIA;

FLUORESCENT DYE; PHOTOPROTEIN;

ANIMAL; CELL SURVIVAL; HUMAN; METABOLISM; REPORTER GENE; REVIEW; SYSTEMS BIOLOGY; THREE DIMENSIONAL IMAGING;

ANIMALS; CELL SURVIVAL; FLUORESCENT DYES; GENES, REPORTER; HUMANS; IMAGING, THREE-DIMENSIONAL; LUMINESCENT PROTEINS; SYSTEMS BIOLOGY;

EID: 58149231550     PISSN: 00711365     EISSN: None     Source Type: Journal    
DOI: 10.1042/BSE0450121     Document Type: Article

References (33)

1. Tyson, J.J., Chen, K.C. & Novak, B. (2003) Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr. Opin. Cell Biol. 15, 221-231
2. Phair, R.D. & Misteli, T. (2001) Kinetic modelling approaches to in vivo imaging. Nat Rev. Mol. Cell Biol. 2, 898-907
3. Goldman, R.D. & Spector, D.L (2005) Live Cell Imaging: A Laboratory Manual, Cold Spring Harbour Laboratory Press
4. Rutter, G.A., Kennedy, H.J., Wood, CD., White, M.R. & Tavaré, J.M. (1998) Real-time imaging of gene expression in single living cells. Chem. Biol. 5, R285-R290
5. Stirland, J.A., Seymour, Z.C., Windeatt, S., Norris, A.J., Stanley, P., Castro, M.G., Loudon, A.S., White, M.R. & Davis, J.R. (2003) Real-time imaging of gene promoter activity using an adenoviral reporter construct demonstrates transcriptional dynamics in normal anterior pituitary cells. J. Endocrinol. 178, 61-69
6. Welsh, D.K. & Kay, S.A. (2005) Bioluminescence imaging in living organisms. Curr. Opin. Biotechnol. 16, 73-78
7. Choy, G., Choyke, P. & Libutti, S.K. (2003) Current advances in molecular imaging: non-invasive in vivo bioluminescent and fluorescent optical imaging in cancer research. Mol. Imaging 2, 303-312
8. Veleri, S. & Wulbeck, C. (2004) Unique self-sustaining circadian oscillators within the brain of Drosophila melanogaster. Chronobiol. Int. 21, 329-342
9. Yamaguchi, S., Isejima, H., Matsuo, T., Okura, R., Yagita, K., Kobayashi, M. & Okamura, H. (2003) Synchronization of cellular clocks in the suprachiasmatic nucleus. Science 302, 1408-1412
10. Stephens, D.J. & Allan, V.J. (2003) Light microscopy techniques for live cell imaging. Science 300, 82-86
11. Chalfie, M., Tu, Y., Euskirchen, G., Ward, W.W. & Prasher, D.C. (1994) Green fluorescent protein as a marker for gene expression. Science 263, 802-805
12. Shimomura, O., Johnson, F.H. & Saiga, Y. (1962) Extraction, purification and properties of aequorin, a bioluminescent protein from the luminous hydromedusan, Aequorea. J. Cell Comp. Physiol. 59, 223-239
13. White, J. & Stelzer, E. (1999) Photobleaching GFP reveals protein dynamics inside live cells. Trends Cell Biol. 9, 61-65
14. Kislauskis, E.H. & Singer, R.H. (1992) Determinants of mRNA localization. Curr. Opin. Cell Biol. 4, 975-978
15. Simpson, J.C., Wellenreuther, R., Poustka, A., Pepperkok, R. & Wiemann, S. (2000) Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. EMBO Rep. 1, 287-292
16. Heim, R., Prasher, D.C. & Tsien, R.Y. (1994) Wavelength mutations and posttranslational autoxidation of green fluorescent protein. Proc Natl. Acad. Sci. U.SA. 91, 12501-12504
17. Heim, R. & Tsien, R.Y. (1996) Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer. Curr. Biol. 6, 178-182
18. Tsien, R.Y. (2003) Breeding molecules to spy on cells. Harvey Lea. 99, 77-93
19. Matz, M.V., Fradkov, A.F., Labas, Y.A., Savitsky, A.P., Zaraisky, A.G., Markolov, M.L & Lukyanov, S.A. (1999) Fluorescent proteins from nonbioluminescent Anthozoa species. Nat Biotechnol. 17, 969-973
20. Shav-Tal, Y., Singer, R.H. & Darzacq, X. (2004) Imaging gene expression in single living cells. Nat Rev. Mol. Cell Biol. 5, 855-B61
21. Lippincott-Schwartz, J., Snapp, E. & Kenworthy, A. (2001) Studying protein dynamics in living cells. Nat Rev. Mol. Cell Biol. 2, 444-456
22. Al-Gubory, K.H. & Houdebine, L.M. (2006) In vivo imaging of green fluorescent protein-expressing cells in transgenic animals using fibred confocal fluorescence microscopy. Eur. J. Cell Biol. 85, 837-845
23. Monk, N.A. (2003) Unravelling Nature's networks. Biochem. Soc Trans. 31, 1457-1461
24. Bouwmeester, T., Bauch, A., Ruffner, H., Angrand, P.O., Bergamini, G., Croughton, K., Cruciat, C., Eberhard, D., Gagneur, J., Ghidelli, S. et al. (2004) A physical and functional map of the human TNF-α/NF-κB signal transduction pathway. Nat. Cell Biol. 6, 97-105
25. Barabasi, A.L & Oltvai, Z.N. (2004) Network biology: understanding the cell's functional organization. Nat Rev. Genet. 5, 101-113
26. Nelson, D.E., Ihekwaba, A.E., Elliott, M., Johnson, J.R., Gibney, C.A., Foreman, B.E., Nelson, G., Se, V., Horton, CA., Spiller, D.G. et al. (2004) Oscillations in NF-κB signaling control the dynamics of gene expression. Science 306, 704-708
27. Lahav, G., Rosenfeld, N., Sigal, A., Geva-Zatorsky, N., Levine, A.J., Elowitz, M.B. & Alon, U. (2004) Dynamics of the p53-Mdm2 feedback loop in individual cells. Nat Genet. 36, 147-150
28. Weijer, C.J. (2003) Visualizing signals moving in cells. Science 300, 96-100
29. Shen, H.L., Nelson, G., Kennedy, S., Nelson, D., Johnson, J., Spiller, D., White, M.R.H. & Kell, D.B. (2006) Automatic tracking of biological cells and compartments using particle filters and active contours. Chemom. Intell. Lab. Syst. 82, 276-282
30. Shen, H.L., Nelson, G., Nelson, D.E., Kennedy, S., Spiller, D.G., Griffiths, T., Paton, N., Oliver, S.G., White, M.R. & Kell, D.B. (2006) Automated tracking of gene expression in individual cells and cell compartments. J. R. Soc Interface 3, 787-794
31. Tvarusko, W., Bentele, M., Misteli, T., Rudolf, R., Kaether, C., Spector, D.L., Gerdes, H.H. & Eils, R. (1999) Time-resolved analysis and visualization of dynamic processes in living cells. Proc Natl. Acad. Sci. U.S.A. 96, 7950-7955
32. Goldbeter, A. (2002) Computational approaches to cellular rhythms. Nature 420, 238-245
33. Mellman, I. & Misteli, T. (2003) Computational cell biology. J. Cell Biol. 161, 463-464