Influenza sequence and epitope database

Nucleic Acids Research

Volumn 37, Issue SUPPL. 1, 2009, Pages

  Yang, In Seok ^a,b   Lee, Joo Yeon ^b   Lee, Joon Seung ^a   Mitchell, Wayne P ^c,d   Oh, Hee Bok ^b   Kang, Chun ^b   Kim, Kyung Hyun ^a  

^a Korea University   (South Korea)

^b Korea National Institute of Health   (South Korea)

^c NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

^d NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

AMANTADINE; EPITOPE; OSELTAMIVIR; ZANAMIVIR;

ANTIVIRAL RESISTANCE; ARTICLE; ASIA; BIOINFORMATICS; INFLUENZA; INFLUENZA SEQUENCE AND EPITOPE DATABASE; INFLUENZA VIRUS A; INFLUENZA VIRUS B; INFORMATION PROCESSING; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEASONAL VARIATION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE; STRUCTURE ANALYSIS; VIRUS GENOME; VIRUS STRAIN;

ANTIGENS, VIRAL; DATABASES, GENETIC; EPITOPES; GENOME, VIRAL; INFLUENZAVIRUS A; INFLUENZAVIRUS B; SEQUENCE ANALYSIS; SOFTWARE; VIRAL PROTEINS;

INFLUENZA B VIRUS; ORTHOMYXOVIRIDAE;

EID: 58149193239     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn881     Document Type: Article

References (20)

1. Stohr,K. (2002) Influenza - WHO cares. Lancet Infect. Dis., 2 517.
2. Taubenberger,J.K., Reid,A.H., Janczewski,T.A. and Fanning,T.G. (2001) Integrating historical, clinical and molecular genetic data in order to explain the origin and virulence of the 1918 Spanish influenza cirus. Phil. Trans. R. Soc. Lond. B Biol. Sci., 356, 1857-1859.
3. Cox,N.J. and Subbarao,K. (2000) Global epidemiology of influenza: Past and present. Ann. Rev. Med., 51, 407-421.
4. Ghedin,E., Sengamalay,N.A., Shumway,M., Zaborsky,J., Feldblyum,T., Subbu,V., Spiro,D.J., Sitz,J., Koo,H., Bolotov,P. et al. (2005) Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution. Nature, 437, 1162-1166.
5. Smith,D.J., Lapedes,A.S., de Jong,J.C., Bestebroer,T.M., Rimmelzwaan,G.F., Osterhaus,A.D. and Fouchier,R.A. (2004) Mapping the antigenic and genetic evolution of influenza virus. Science, 305, 371-376.
6. Russel,C.A., Jones,T.C., Barr,I.G., Cox,N.J., Garten,R.J., Gregory,V., Gust,I.D., Hampson,A.W., Hay,A.J., Hurt,A.C. et al. (2008) The global circulation of seasonal influenza A (H3N2) virusese. Science 320, 340-346.
7. Bao,Y., Bolotov,P., Dernovoy,D., Kiryutin,B., Zaslavsky,L., Tatusova,T., Ostell,J. and Lipman,D. (2008) The influenza virus resource at the national center for biotechnology information. J. Virol., 82 596-601.
8. Macken,C., Lu,H., Goodman,J. and Boykin,L. (2001) The value of a database in surveillance and vaccine selection. In Osterhaus,A.D.M.E., Cox,N. and Hampson,A.W. (eds), Options for the Control of Influenza IV. Elsevier Science, Amsterdam, pp. 103-106.
9. Chang,S., Zhang,J., Liao,X., Zhu,X., Wang,D., Zhu,J., Feng,T., Zhu,B., Gao,G.F., Wang,J. et al. (2007) Influenza virus database (IVDB): an integrated information resource and analysis platform for influenza virus research. Nucl. Acids Res., 35, D376-D380.
10. Squires,B., Macken,C., Garcia-Sastre,A., Godbole,S., Noronha,J., Hunt,V., Chang,R., Larsen,C.N., Klem,E., Biersack,K. et al. (2008) BioHealthBase: Informatics support in the elucidation of influenza virus host-pathogen interactions and virulence. Nucleic Acids Res., 36, D497-D503.
11. Webster,R.G., Bean,W.J., Gorman,O.T., Chambers,T.M. and Kawaoka,Y. (1992) Evolution and ecology of influenza A viruses. Microbiol. Rev. 56, 152-179.
12. Wong,C.M., Yang,L., Chan,K.P., Leung,G.M., Chan,K.H., Guan,Y., Lam,T.H., Hedley,A.J. and Peiris,M. (2006) Influenza-associated weekly hospitalization in a subtropical city. PLoS Med., 3, 485-491.
13. Lee,J.S., Shin,K.C., Na,B.K., Lee,J.Y., Kang,C., Kim,J.H., Park,O., Jeong,E.K., Lee,J.K., Kwon,J.W. et al. (2007) Influenza surveillance in Korea: Establishment and first results of an epidemiological and virological surveillance scheme. Epidemio. Infect., 135, 1117-1123.
14. Daly,J.M., Wood,J.M. and Robertson,J.S. (1988) Co-circulation and divergence of human influenza viruses. In Nicholson, K.G., Webster,R.G. and Hay,A.J. (eds), Textbook of Influenza. Blackwell Science, Oxford, pp. 168-177.
15. Bui,H., Peters,B., Assarsson,E., Mbawuike,I. and Sette,A. (2007) Ab and T cell epitopes of influenza A virus, knowledge and opportunities. Proc. Natl Acad. Sci. USA, 104, 246-251.
16. Beigel,J.H., Farrar,J., Han,A.M., Hayden,F.G., Hyer,R., de Jong,M.D., Lochindarat,S., Nguyen,T.K., Nguyen,T.H., Tran,T.H. et al. (2005) Avian influenza A (H5N1) infection in humans. N. Engl. J. Med., 353, 1374-1385.
17. Stephens,S.M., Chen,J.Y., Davidson,M.G., Thomas,S. and Trute,B.M. (2005) Oracle database 10g: A platform for BLAST search and regular expression pattern matching in life sciences. Nucleic Acids Res., 33, D675-D679.
18. Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
19. Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242.
20. Bright,R.A., Medina,M.J., Xu,X., Perez-Oronoz,G., Wallis,T.R., Davis,X.M., Povinelli,L., Cox,N.J. and Klimov,A.I. (2005) Incidence of adamantine resistance among influenza A (H3N2) virusese isolated worldwide from 1994 to 2005: A cause for concern. Lancet, 366 1175-1181.