BioHealthBase: Informatics support in the elucidation of influenza virus host-pathogen interactions and virulence

Nucleic Acids Research

Volumn 36, Issue SUPPL. 1, 2008, Pages

  Squires, Burke ^a   Macken, Catherine ^b   Garcia Sastre, Adolfo ^c   Godbole, Shubhada ^a   Noronha, Jyothi ^a   Hunt, Victoria ^a   Chang, Roger ^a   Larsen, Christopher N ^d   Klem, Ed ^e   Biersack, Kevin ^e   Scheuermann, Richard H ^a  

^a UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^b LOS ALAMOS NATIONAL LABORATORY   (United States)

^c MOUNT SINAI SCHOOL OF MEDICINE   (United States)

^d Vecna Technologies Inc   (United States)

^e Northrup Grumman Info Technol H   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EPITOPE; VIRUS ANTIBODY;

ALGORITHM; ANTIBODY DETECTION; ARTICLE; BIOHEALTHBASE DATABASE; BIOINFORMATICS; DATA BASE; DRUG RESEARCH; GENETIC DATABASE; GENOME ANALYSIS; IMMUNE RESPONSE; INFLUENZA VIRUS; INFORMATION RETRIEVAL; INTERNET; MATHEMATICAL COMPUTING; MEDICAL INFORMATION; PREDICTION; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN DETERMINATION; PROTEIN FUNCTION; PROTEIN STRUCTURE; REACTOME DATABASE; REFERENCE DATABASE; SCIENTIFIC LITERATURE; VIRUS CELL INTERACTION; VIRUS GENE; VIRUS GENOME; VIRUS VIRULENCE;

ANIMALS; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; DUCKS; GENES, VIRAL; GENOMICS; HOST-PATHOGEN INTERACTIONS; HUMANS; INFLUENZA A VIRUS, H5N1 SUBTYPE; INTERNET; ORTHOMYXOVIRIDAE; PROTEIN CONFORMATION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; VIRAL PROTEINS; VIRULENCE;

FRANCISELLA TULARENSIS; MICROSPORIDIA; MYCOBACTERIUM TUBERCULOSIS; ORTHOMYXOVIRIDAE;

EID: 38549147460     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm905     Document Type: Article

References (15)

1. Taubenberger, J.K. and Morens, D.M. (2006) 1918 Influenza: The mother of all pandemics. Emerg. Infect Dis., 12, 15-22.
2. Patterson, K.D. and Pyle, G.F. (1991) The geography and mortality of the 1918 influenza pandemic. Bull. Hist. Med., 65, 4-21.
3. Palese, P. and Shaw, M.L. (2007) Orthomyxoviridae: The viruses and their replication. In Fields, B.N., Knipe, D.M. and Howley, P.M. (eddies), Fields Virology, 5th edn. Lippincott Williams & Wilkins, Philadelphia, PA.
4. Ito, T. and Kawaoka, Y. (2000) Host-range barrier of influenza A viruses. Vet. Microbiol., 74, 71-75.
5. Kuiken, T., Holmes, E.C., McCauley, J., Rimmelzwaan, G.F., Williams, C.S. and Grenfell, B.T. (2006) Host species barriers to influenza virus infections. Science, 312, 394-397.
6. Guillot, L., Ice Goffic, R., Bloch, S., Escriou, N., Akira, S., Chignard, M. and Si Tahar, M. (2005) Involvement of Toll-like receptor 3 in the immune response of lung epithelial cells to double-stranded RNA and influenza A virus. J. Biol. Chem., 280 5571-5580.
7. Smith, D.J., Lapedes, A.S., de Jong, J.C., Bestebroer, T.M., Rimmelzwaan, O.F., Osterhaus, A.D.M.E. and Fouchier, R.A.M. (2004) Mapping the antigenic and genetic evolution of influenza virus. Science, 305, 371-376.
8. Greene, J.M., Collins, F., Lefkowitz, E.J., Roos, D., Scheuerman, R.H., Sobral, B., Stevens, R., White, O. and Di Francesco, V. (2007) National Institute of Allergy and Infectious Diseases Bioinformetics Resource Centers: New Assets for Pathogen Informatics. Infect. Immun., 75, 3212-3219.
9. Peters, B., Sidney, J., Bourne, P., Bui, H.-H., Buus, S., Doh, G., Fleri, W., Kronenberg, M., Kubo, R. et al. (2005) The immune epitope database and analysis resources from vision to blueprint. PLoS Biol. 3, e91.
10. Joshi-Tope, G., Gillespie, M., Vastrik, I., D'Eustachio, F., Schmidt, E., de Bono, B., Jassal, B., Gopinath, G.R., Wu, G.R. et al. (2005) Reactome: A knowledgebase of biological pathways. Nucleic Acids Res., 33, D428-D432.
11. Li, Z, Chen, H., Jiao, P., Deng, G., Tian, G., Li, Y, Hoffmann, E., Webster, R.G., Matauoka, Y. et al. (2005) Molecular basis of replication of Duck H5N1 influenza viruses in a mammalian mouse model. J. Virol., 79, 12058-12064.
12. Edgar, R.C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
13. Stein, L.D., Mungall, C., Shu, S., Caudy, M., Mangone, M., Day, A., Nickerson, E., Stajich, J.E., Harris, T,W. et al. (2002) The generic genome browser: A building block for a Model Organism System Database. Genome Res., 12, 1599-1610.
14. Larsen, M.V., Lundegaard, C., Lamberth, K., Buus, S., Brunak, S., Lund, O. and Nielsen, M. (2005) An integrative approach ta CTL epitope prediction: A combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions. Eur. J. Immunol., 35, 2295-2303.
15. Westbrook, J., Feng, Z., Chen, L., Yang, H. and Berman, H.M. (2003) The Protein Data. Bank and structural genomics. Nucleic Acids Res., 31, 489491.