Nucleotide and copy-number polymorphism at the odorant receptor genes Or22a and Or22b in Drosophila melanogaster

Molecular Biology and Evolution

Volumn 26, Issue 1, 2009, Pages 61-70

  Aguadé, Montserrat ^a  

^a UNIVERSITY OF BARCELONA   (Spain)

Author keywords

Drosophila melanogaster; Nucleotide polymorphism; Odorant receptors

Indexed keywords

NUCLEOTIDE;

AFRICA; ARTICLE; DROSOPHILA MELANOGASTER; GENE DUPLICATION; GENE NUMBER; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GEOGRAPHICAL VARIATION (SPECIES); HAPLOTYPE; MOLECULAR BIOLOGY; MULTIGENE FAMILY; NATURAL POPULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; ODORANT RECEPTOR 22A GENE; ODORANT RECEPTOR 22B GENE; RECEPTOR GENE;

ANIMALS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; GENE DOSAGE; PHYLOGENY; POLYMORPHISM, GENETIC; RECEPTORS, ODORANT;

DROSOPHILA MELANOGASTER; MELANOGASTER SUBGROUP;

EID: 57749173441     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msn227     Document Type: Article

References (48)

1. Aguadé M. 1998. Different forces drive the evolution of the Acp26Aa and Acp26Ab accessory gland genes in the Drosophila melanogaster species complex. Genetics. 150:1079-1089.
2. Aguadé M. 1999. Positive selection drives the evolution of the Acp29AB accessory gland protein in Drosophila. Genetics. 152:543-551.
3. Aguadé M, Miyashita N, Langley CH. 1992. Polymorphism and divergence in the Mst26A male accessory gland gene region in Drosophila. Genetics. 132:755-770.
4. Andolfatto P, Wall JD, Kreitman M. 1999. Unusual haplotype structure at the proximal breakpoint of In(2L)t in a natural population of Drosophila melanogaster. Genetics. 153:1297-1311.
5. Ashburner M. 1989. Drosophila: a laboratory handbook. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press.
6. Bénassi V, Aulard S, Mazeau S, Veuille M. 1993. Molecular variation of Adh and P6 genes in an African population of Drosophila melanogaster and its relation to chromosomal inversions. Genetics. 134:789-799.
7. Bénassi V, Veuille M. 1995. Comparative population structuring of molecular and allozyme variation of Drosophila melanogaster Adh between Europe, west Africa and east Africa. Genet Res. 65:95-103.
8. Betrán E, Rozas J, Navarro A, Barbadilla A. 1997. The estimation of the number and the length distribution of gene conversion tracts from population DNA sequence data. Genetics. 146:89-99.
9. Clark AG, Eisen MB, Smith DR. Drosophila 12 Genomes Consortium, et al. (128 co-authors). 2007 Evolution of genes and genomesonthe Drosophila phylogeny. Nature. 450:203-218.
10. Collier LS, Suyama K, Anderson JH, Scott MP. 2004. Drosophila Costal1 mutations are alleles of protein kinase A that modulate hedgehog signaling. Genetics. 167:783-796.
11. Conceição IC, Aguadé M. 2008. High incidence of interchromosomal transpositions in the evolutionary history of a subset of or genes in Drosophila. J Mol Evol. 66:325-332.
12. Couto A, Alenius M, Dickson BJ. 2005. Molecular, anatomical, and functional organization of the Drosophila olfactory system. Curr Biol. 15:1535-1547.
13. Dean MD, Ballard KJ, Glass A, Ballard JWO. 2003. Influence of two Wolbachia strains on population structure of East African. Drosophila simulans. Genetics. 165:1959-1969.
14. Dobritsa AA, van der Goes van Naters W, Warr CG, Steinbrecht RA, Carlson JR. 2003. Integrating the molecular and cellular basis of odor coding in the Drosophila antenna. Neuron. 37:827-841.
15. Emerson JJ, Cardoso-Moreira M, Borevitz JO, Long M. 2008. Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster. Science. 320(5883):1629-1631.
16. Fishilevich E, Domingos AI, Asahina K, Naef F, Vosshall LB, Louis M. 2005. Chemotaxis behavior mediated by single larval olfactory neurons in Drosophila. Curr Biol. 15:2086-2096.
17. Gardiner A, Barker D, Butlin RK, Jordan WC, Ritchie MG. 2008. Drosophila chemoreceptor gene evolution: selection, specialization and genome size. Mol Ecol. 17:1648-1657.
18. Guo S, Kim J. 2007. Molecular evolution of Drosophila odorant receptor genes. Mol Biol Evol. 24:1198-1207.
19. Hallem EA, Carlson JR. 2006. Coding of odors by a receptor repertoire. Cell. 125:143-160.
20. Hallem EA, Ho MG, Carlson JR. 2004. The molecular basis of odor coding in the Drosophila antenna. Cell. 117:965-979.
21. Hudson RR, Bailey K, Skarecky D, Kwiatowski J, Ayala FJ. 1994. Evidence for positive selection in the superoxide dismutase (Sod) region of Drosophila melanogaster. Genetics. 136:1329-1340.
22. Hudson RR, Boos DD, Kaplan NL. 1992. A statistical test for detecting geographic subdivision. Mol Evol Biol. 9:138-151.
23. Hudson RR, Kreitman M, Aguadé M.1987. A test of neutral molecular evolution based on nucleotide data. Genetics. 116:153-159.
24. Hutter S, Li H, Beisswanger S, De Lorenzo D, Stephan W. 2007. Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data. Genetics. 177:469-480.
25. Lynch M, Katju V. 2004. The altered evolutionary trajectories of gene duplicates. Trends Genet. 20:544-549.
26. Maddison WP, Maddison DR. 2002. MacClade: analysis of phylogeny and character evolution. Version 4.05. Sunderland (MA): Sinauer.
27. Martín-Campos JM, Comerón JM, Miyashita N, Aguadé M. 1992. Intraspecific and interspecific variation at the y-ac-sc region of Drosophila simulans and Drosophila melanogaster. Genetics. 130:805-816.
28. McBride CS, Arguello JR, O'Meara BC. 2007. Five Drosophilagenomes reveal nonneutral evolution and the signature of host specialization in the chemoreceptor superfamily. Genetics. 177:1395-1416.
29. McDonald JH, Kreitman M. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature. 351:652-654.
30. Nei M. 1987. Molecular evolutionary genetics. New York: Columbia University Press.
31. Nozawa M, Nei M. 2007. Evolutionary dynamics of olfactory receptor genes in Drosophila species. Proc Natl Acad Sci USA. 104:7122-7127.
32. Ometto L, Glinka S, De Lorenzo D, Stephan W. 2005. Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation. Mol Biol Evol. 22:2119-2130.
33. Orengo DJ, Aguadé M. 2004. Detecting the footprint of positive selection in a European population of Drosophila melanogaster: multilocus pattern of variation and distance to coding regions. Genetics. 167:1759-1766.
34. Petrov DA, Sangster TA, Johnston JS, Hartl DL, Shaw KL. 2000. Evidence for DNA loss as a determinant of genome size. Science. 287:1060-1062.
35. Ramos-Onsins S, Aguadé M. 1998. Molecular evolution of the Cecropin multigene family in Drosophila. Functional genes vs. pseudogenes. Genetics. 150:157-171.
36. Ramos-Onsins SE, Mitchell-Olds T. 2007. mlcoalsim: multilocus coalescent simulations. Evol Bioinform. 2:41-44.
37. Ray A, van Naters WG, Shiraiwa T, Carlson JR. 2007. Mechanisms of odor receptor gene choice in Drosophila. Neuron. 53:353-369.
38. Robertson HM, Warr CG, Carlson JR. 2003. Molecular evolution of the insect chemoreceptor gene superfamily in Drosophila melanogaster. Proc Natl Acad Sci USA. 100:14537-14542.
39. Rozas J, Sánchez-DelBarrio JC, Meseguer X, Rozas R. 2003. DnaSP, DNA polymorphism analysis by the coalescent and other methods. Bioinformatics. 19:2496-2497.
40. Rychlik W. 1992. OLIGO 4.1 primer analysis software. Comput Sppl Biosci. 13:307-311.
41. Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123:585-595.
42. Takahashi A, Takano-Shimizu TA. 2005. High-frequency null mutant of an odorant-binding protein gene, Obp57e, in Drosophila melanogaster. Genetics. 170:709-718.
43. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596-1599.
44. Tamura K, Subramanian S, Kumar S. 2004. Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol Biol Evol. 24:36-44.
45. Teshima KM, Innan H. 2004. The effect of gene conversion on the divergence between duplicated genes. Genetics. 166:1553-1560.
46. Tunstall NE, Sirey T, Newcomb RD, Warr CG. 2007. Selective pressures on Drosophila chemosensory receptor genes. J Mol Evol. 14:133-154.
47. Turner TL, Levine MT, Eckert ML, Begun DJ. 2008. Genomic analysis of adaptive differentiation in Drosophila melanogaster. Genetics. 179:455-473.
48. Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.