The Effect of Gene Conversion on the Divergence between Duplicated Genes

Genetics

Volumn 166, Issue 3, 2004, Pages 1553-1560

  Teshima, Kosuke M ^a   Innan, Hideki ^b  

^a UNIVERSITY OF CINCINNATI COLLEGE OF MEDICINE   (United States)

^b UNIVERSITY OF TEXAS SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DATA ANALYSIS; EVOLUTION; GENE CONVERSION; GENE DUPLICATION; GENETIC VARIABILITY; GENOME; MOLECULAR CLOCK; MUTATION; MUTATION RATE; PRIORITY JOURNAL; PROBABILITY;

ANIMALS; BASE SEQUENCE; CHROMOSOMES; COMPUTER SIMULATION; DNA; DROSOPHILA MELANOGASTER; EVOLUTION, MOLECULAR; GENE CONVERSION; GENES, DUPLICATE; GENOME; MODELS, GENETIC; MUTATION; POLYMORPHISM, GENETIC; TIME FACTORS;

EID: 1942485886     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.166.3.1553     Document Type: Article

References (22)

1. ARNHEIM, N., 1983 Concerted evolution of multigene families, pp. 38-61 in Evolution of Genes and Proteins, edited by M. NEI and R. K. KOEHN. Sinauer Associates, Sunderland, MA.
2. BAILEY, J. A., Z. GU, R. A. CLARK, K. REINERT, R. V. SAMONTE et al., 2002 Recent segmental duplications in the human genome. Science 297: 1003-1007.
3. BETTENCOURT, B. R., and M. E. FEDER, 2002 Rapid concerted evolution via gene conversion at the Drosophila hsp70 genes. J. Mol. Evol. 54: 569-586.
4. CHARLESWORTH, D., B. K. MABLE, M. H. SCHIERUP, C. BARTOLOMÉ and P. AWADALLA, 2003 Diversity and linkage of genes in the self-incompatibility gene family in Arabidopsis lyrata. Genetics 164: 1519-1535.
5. FRIEDMAN, R., and A. L. HUGHES, 2001 Pattern and timing of gene duplication in animal genomes. Genome Res. 11: 1842-1847.
6. GU, X., Y. WANG and J. GU, 2002 Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution. Nat. Genet. 31: 205-209.
7. INNAN, H., 2002 A method for estimating the mutation, gene conversion and recombination parameters in small multigene families. Genetics 161: 865-872.
8. INNAN, H., 2003a The coalescent and infinite-site model of a small multigene family. Genetics 163: 803-810.
9. INNAN, H., 2003b A two-locus gene conversion model with selection and its application to the human RHCE and RHD genes. Proc. Natl. Acad. Sci. USA 100: 8793-8798.
10. INOMATA, N., H. SHIBATA, E., OKUYAMA and T. YAMAZAKI, 1995 Evolutionary relationships and sequence variation of α-amylase variants encoded by duplicated genes in the Amy locus of Drosophila melanogaster. Genetics 141: 237-244.
11. KING, L. M., 1998 The role of gene conversion in determining sequence variation and divergence in the Est 5 gene family in Drosophila pseudoobscura. Genetics 148: 305-315.
12. LAZZARO, B. P., and A. G. CLARK, 2001 Evidence for recent paralogous gene conversion and exceptional allelic divergence in the Attacin genes of Drosophila melanogaster. Genetics 159: 659-671.
13. LI, W.-H., 1997 Molecular Evolution. Sinauer Associates, Sunderland, MA.
14. LYNCH, M., and J. S. CONERY, 2000 The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
15. MCLYSAGHT, A., K. HOKAMP and K. H. WOLFE, 2002 Extensive genomic duplication during early chordate evolution. Nat. Genet. 31: 200-204.
16. NIELSEN, K. M., J. KASPER, M. CHOI, T. BEDFORD, K. KRISTIANSE et al., 2003 Gene conversion as a source of nucleotide diversity in Plasmodium falciparum. Mol. Biol. Evol. 20: 726-734.
17. OHTA, T., 1980 Evolution and Variation of Multigene Families. Springer-Verlag, Berlin/New York.
18. OHTA, T., 1983 On the evolution of multigene families. Theor. Popul. Biol. 23: 216-240.
19. ROZEN, S., H. SKALETSKY, J. D. MARSZALEK, P. J. MINX, H. S. CORDUM et al., 2003 Abundant gene conversion between arms of palindromes in human and ape chromosomes. Nature 423: 873-876.
20. SATO, K., T. NISHIO, R. KIMURA, M. KUSABA, T. SUZUKI et al., 2002 Coevolution of the S locus genes SRK, SLG and SP11/SCR in Brassica oleracea and B. rapa. Genetics 162: 931-940.
21. WALSH, J. B., 1987 Sequence-dependent gene conversion: Can duplicated genes diverge fast enough to escape conversion? Genetics 117: 543-557.
22. WIUF, C., and J. HEIN, 2000 The coalescent with gene conversion. Genetics 155: 451-462.