Direct allosteric regulation between the GAF domain and catalytic domain of photoreceptor phosphodiesterase PDE6

Journal of Biological Chemistry

Volumn 283, Issue 44, 2008, Pages 29699-29705

  Zhang, Xiu Jun ^a   Cahill, Karyn B ^a   Elfenbein, Arye ^b,c   Arshavsky, Vadim Y ^b   Cote, Rick H ^a  

^a UNIVERSITY OF NEW HAMPSHIRE   (United States)

^b DUKE UNIVERSITY MEDICAL CENTER   (United States)

^c DARTMOUTH MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINES; AMINO ACIDS; BINDING ENERGY; BIOCHEMISTRY; ENZYME INHIBITION; LAWS AND LEGISLATION; NUCLEIC ACIDS; NUCLEOTIDES; ORGANIC ACIDS; PORT TERMINALS;

ALLOSTERIC COMMUNICATIONS; ALLOSTERIC EFFECTS; ALLOSTERIC REGULATIONS; BINDING AFFINITIES; BINDING PROPERTIES; CATALYTIC DOMAINS; CATALYTIC SUBUNITS; CONFORMATIONAL CHANGES; CYCLIC NUCLEOTIDE PHOSPHODIESTERASES; DO-MAINS; DRUG BINDINGS; ISOBUTYL; MICHAELIS CONSTANTS; PHARMACOLOGICAL INHIBITORS; PHOSPHODIESTERASE; PHOTOTRANSDUCTION; TERMINAL REGIONS; VARDENAFIL; VISUAL TRANSDUCTIONS; ZAPRINAST;

BINDING SITES;

AMINO ACID; CYCLIC GMP; ISOBUTYLMETHYLXANTHINE; PHOSPHODIESTERASE VI; SILDENAFIL; VARDENAFIL; ZAPRINAST;

ALLOSTERISM; AMINO TERMINAL SEQUENCE; ANIMAL TISSUE; ARTICLE; BINDING AFFINITY; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CATALYSIS; CONFORMATION; COW; DRUG PROTEIN BINDING; ENZYME ACTIVE SITE; ENZYME ACTIVITY; HYDROLYSIS; LIGAND BINDING; LIGHT ADAPTATION; MICHAELIS CONSTANT; NONHUMAN; PHOTOTRANSDUCTION; PRIORITY JOURNAL; PROTEIN BINDING;

ALLOSTERIC SITE; ANIMALS; CATALYTIC DOMAIN; CATTLE; CYCLIC GMP; CYCLIC NUCLEOTIDE PHOSPHODIESTERASES, TYPE 6; DOSE-RESPONSE RELATIONSHIP, DRUG; IMIDAZOLES; KINETICS; LIGANDS; MOLECULAR CONFORMATION; PIPERAZINES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; PURINES; RETINA; SULFONES; TRIAZINES;

EID: 57649155160     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M803948200     Document Type: Article

References (62)

1. Fain, G. L. (2003) Sensory Transduction, Sinauer Associates, Inc., Sunderland, MA
2. Zhang, X., and Cote, R. H. (2005) Front. Biosci. 10, 1191-1204
3. Lamb, T. D., and Pugh, E. N., Jr. (2006) Investig. Ophthalmol. Vis. Sci. 47, 5138-5152
4. Arshavsky, V. Y., Dumke, C. L., and Bownds, M. D. (1992) J. Biol. Chem. 267, 24501-24507
5. Cote, R. H. (2006) in Cyclic Nucleotide Phosphodiesterases in Health and Disease (Beavo, J. A., Francis, S. H., and Houslay, M. D., eds) pp. 165-193, CRC Press, Inc., Boca Raton, FL
6. Zoraghi, R., Corbin, J. D., and Francis, S. H. (2004) Mol. Pharmacol. 65, 267-278
7. Aravind, L., and Ponting, C. P. (1997) Trends Biochem. Sci. 22, 458-459
8. Francis, S. H., Lincoln, T. M., and Corbin, J. D. (1980) J. Biol. Chem. 255, 620-626
9. Yamazaki, A., Sen, I., Bitensky, M. W., Casnellie, J. E., and Greengard, P. (1980) J. Biol. Chem. 255, 11619-11624
10. Martins, T. J., Mumby, M. C., and Beavo, J. A. (1982) J. Biol. Chem. 257, 1973-1979
11. Thomas, M. K., Francis, S. H., and Corbin, J. D. (1990) J. Biol. Chem. 265, 14964-14970
12. Hebert, M. C., Schwede, F., Jastorff, B., and Cote, R. H. (1998) J. Biol. Chem. 273, 5557-5565
13. Gross-Langenhoff, M., Hofbauer, K., Weber, J., Schultz, A., and Schultz, J. E. (2006) J. Biol. Chem. 281, 2841-2846
14. Muradov, H., Boyd, K. K., and Artemyev, N. O. (2004) Vision Res. 44, 2437-2444
15. Huang, D., Hinds, T. R., Martinez, S. E., Doneanu, C., and Beavo, J. A. (2004) J. Biol. Chem. 279, 48143-48151
16. Yamamoto, T., Manganiello, V. C., and Vaughan, M. (1983) J. Biol. Chem. 258, 12526-12533
17. Rybalkin, S. D., Rybalkina, I. G., Shimizu-Albergine, M., Tang, X. B., and Beavo, J. A. (2003) EMBO J. 22, 469-478
18. Corbin, J. D., Blount, M. A., Weeks, J. L., Beasley, A., Kuhn, K. P., Ho, Y. S., Saidi, L. F., Hurley, J. H., Kotera, J., and Francis, S. H. (2003) Mol. Pharmacol. 63, 1364-1372
19. Blount, M. A., Beasley, A., Zoraghi, R., Sekhar, K. R., Bessay, E. P., Francis, S. H., and Corbin, J. D. (2004) Mol. Pharmacol. 66, 144-152
20. Turko, I. V., Ballard, S. A., Francis, S. H., and Corbin, J. D. (1999) Mol. Pharmacol. 56, 124-130
21. Blount, M. A., Zoraghi, R., Bessay, E. P., Beasley, A., Francis, S. H., and Corbin, J. D. (2007) J. Pharmacol. Exp. Ther. 323, 730-737
22. Cote, R. H. (2004) Int. J. Impot. Res. 16, S28-S33
23. D'Amours, M. R., and Cote, R. H. (1999) Biochem. J. 340, 863-869
24. Mou, H., and Cote, R. H. (2001) J. Biol. Chem. 276, 27527-27534
25. Artemyev, N. O., and Hamm, H. E. (1992) Biochem. J. 283, 273-279
26. Takemoto, D. J., Hurt, D., Oppert, B., and Cunnick, J. (1992) Biochem. J. 281, 637-643
27. Guo, L. W., Grant, J. E., Hajipour, A. R., Muradov, H., Arbabian, M., Artemyev, N. O., and Ruoho, A. E. (2005) J. Biol. Chem. 280, 12585-12592
28. Guo, L. W., Muradov, H., Hajipour, A. R., Sievert, M. K., Artemyev, N. O., and Ruoho, A. E. (2006) J. Biol. Chem. 281, 15412-15422
29. Lipkin, V. M., Dumler, I. L., Muradov, K. G., Artemyev, N. O., and Etingof, R. N. (1988) FEBS Lett. 234, 287-290
30. Skiba, N. P., Artemyev, N. O., and Hamm, H. E. (1995) J. Biol. Chem. 270, 13210-13215
31. Artemyev, N. O., Natochin, M., Busman, M., Schey, K. L., and Hamm, H. E. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 5407-5412
32. Yamazaki, A., Bartucci, F., Ting, A., and Bitensky, M. W. (1982) Proc. Natl. Acad. Sci. U. S. A. 79, 3702-3706
33. Cote, R. H., Bownds, M. D., and Arshavsky, V. Y. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 4845-4849
34. Pentia, D. C., Hosier, S., Collupy, R. A., Valeriani, B. A., and Cote, R. H. (2005) Methods Mol. Biol. 307, 125-140
35. Cote, R. H. (2000) Methods Enzymol. 315, 646-672
36. Mou, H., Grazio, H. J., Cook, T. A., Beavo, J. A., and Cote, R. H. (1999) J. Biol. Chem. 274, 18813-18820
37. Cote, R. H. (2005) Methods Mol. Biol. 307, 141-154
38. Artemyev, N. O., Arshavsky, V. Y., and Cote, R. H. (1998) Methods (San Diego) 14, 93-104
39. Smith, P. K., Krohn, R. I., Hermanson, G. T., Mallia, A. K., Gartner, F. H., Provenzano, M. D., Fujimoto, E. K., Goeke, N. M., Olson, B. J., and Klenk, D. C. (1985) Anal. Biochem. 150, 76-85
40. He, F., Seryshev, A. B., Cowan, C. W., and Wensel, T. G. (2000) J. Biol. Chem. 275, 20572-20577
41. Jungbauer, A., and Graumann, K. (2001) J. Clin. Ligand Assay 24, 270-274
42. Song, J., Guo, L. W., Muradov, H., Artemyev, N. O., Ruoho, A. E., and Markley, J. L. (2008) Proc. Natl. Acad. Sci. U. S. A. 105, 1505-1510
43. Granovsky, A. E., and Artemyev, N. O. (2000) J. Biol. Chem. 275, 41258-41262
44. Card, G. L., England, B. P., Suzuki, Y., Fong, D., Powell, B., Lee, B., Luu, C., Tabrizizad, M., Gillette, S., Ibrahim, P. N., Artis, D. R., Bollag, G., Milburn, M. V., Kim, S. H., Schlessinger, J., and Zhang, K. Y. (2004) Structure (Lond.) 12, 2233-2247
45. Zhang, K. Y., Card, G. L., Suzuki, Y., Artis, D. R., Fong, D., Gillette, S., Hsieh, D., Neiman, J., West, B. L., Zhang, C., Milburn, M. V., Kim, S. H., Schlessinger, J., and Bollag, G. (2004) Mol. Cell 15, 279-286
46. Wyman, J., and Gill, S. J. (1990) Binding and Linkage: Functional Chemistry of Biological Macromolecules, University Science Books, Mill Valley, CA
47. Calvert, P. D., Ho, T. W., LeFebvre, Y. M., and Arshavsky, V. Y. (1998) J. Gen. Physiol. 111, 39-51
48. Zhang, X., Feng, Q., and Cote, R. H. (2005) Investig. Ophthalmol. Vis. Sci. 46, 3060-3066
49. Turko, I. V., Francis, S. H., and Corbin, J. D. (1999) J. Biol. Chem. 274, 29038-29041
50. Corbin, J. D., Turko, I. V., Beasley, A., and Francis, S. H. (2000) Eur. J. Biochem. 267, 2760-2767
51. Francis, S. H., Bessay, E. P., Kotera, J., Grimes, K. A., Liu, L., Thompson, W. J., and Corbin, J. D. (2002) J. Biol. Chem. 277, 47581-47587
52. Rybalkin, S. D., Rybalkina, I. G., Feil, R., Hofmann, F., and Beavo, J. A. (2002) J. Biol. Chem. 277, 3310-3317
53. Mullershausen, F., Friebe, A., Feil, R., Thompson, W. J., Hofmann, F., and Koesling, D. (2003) J. Cell Biol. 160, 719-727
54. Arshavsky, V. Y., Lamb, T. D., and Pugh, E. N., Jr. (2002) Annu. Rev. Physiol. 64, 153-187
55. Huai, Q., Liu, Y., Francis, S. H., Corbin, J. D., and Ke, H. (2004) J. Biol. Chem. 279, 13095-13101
56. Cahill, K. B., Quade, J. H., Cote, R. H., and Carleton, K. L. (2007) Investig. Ophthalmol. Vis. Sci. 48, (E-Abstr. 586)
57. Wang, H., Liu, Y., Huai, Q., Cai, J., Zoraghi, R., Francis, S. H., Corbin, J. D., Robinson, H., Xin, Z., Lin, G., and Ke, H. (2006) J. Biol. Chem. 281, 21469-21479
58. Wang, H., Ye, M., Robinson, H., Francis, S. H., and Ke, H. (2008) Mol. Pharmacol. 73, 104-110
59. Muradov, H., Boyd, K. K., and Artemyev, N. O. (2006) Vision Res. 46, 860-868
60. Gal, A., Orth, U., Baehr, W., Schwinger, E., and Rosenberg, T. (1994) Nat. Genet. 7, 64-68
61. Muradov, K. G., Granovsky, A. E., and Artemyev, N. O. (2003) Biochemistry 42, 3305-3310
62. Tsang, S. H., Woodruff, M. L., Jun, L., Mahajan, V., Yamashita, C. K., Pedersen, R., Lin, C. S., Goff, S. P., Rosenberg, T., Larsen, M., Farber, D. B., and Nusinowitz, S. (2007) Hum. Mutat. 28, 243-254