NMR unfolding studies on a liver bile acid binding protein reveal a global two-state unfolding and localized singular behaviors

Archives of Biochemistry and Biophysics

Volumn 481, Issue 1, 2009, Pages 21-29

  D'Onofrio, Mariapina ^a   Ragona, Laura ^b   Fessas, Dimitrios ^c   Signorelli, Marco ^c   Ugolini, Raffaella ^a   Pedò, Massimo ^a   Assfalg, Michael ^a   Molinari, Henriette ^a  

^a UNIVERSITY OF VERONA   (Italy)

^b CNR   (Italy)

^c UNIVERSITY OF MILAN   (Italy)

Author keywords

Chicken liver bile acid binding protein; Differential scanning calorimetry; Hydrogen exchange; Nuclear magnetic resonance; Residual structure; Transient aggregation; Urea unfolding

Indexed keywords

AMINO ACID; BILE ACID BINDING PROTEIN; FATTY ACID BINDING PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; CHICKEN; DIFFERENTIAL SCANNING CALORIMETRY; LIVER; MOLECULAR DYNAMICS; MOLECULAR MODEL; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN DENATURATION; PROTEIN FOLDING;

CARRIER PROTEINS; MEMBRANE GLYCOPROTEINS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN FOLDING; RECOMBINANT PROTEINS;

EID: 57649098247     PISSN: 00039861     EISSN: 10960384     Source Type: Journal    
DOI: 10.1016/j.abb.2008.10.017     Document Type: Article

References (49)

1. Chmurzynska A. Journal of Applied Genetics 47 (2006) 39-48
2. Ropson I.J., and Frieden C. Proceedings of the National Academy of Sciences of the United States of America 89 (1992) 7222-7226
3. Ropson I.J., Gordon J.I., and Frieden C. Biochemistry 29 (1990) 9591-9599
4. Kim K., and Frieden C. Protein Science 7 (1998) 1821-1828
5. Kim K., Ramanathan R., and Frieden C. Protein Science 6 (1997) 364-372
6. Hodsdon M.E., and Frieden C. Biochemistry 40 (2001) 732-742
7. Dalessio P.M., and Ropson I.J. Biochemistry 39 (2000) 860-871
8. Chattopadhyay K., Elson E.L., and Frieden C. Proceedings of the National Academy of Sciences of the United States of America 102 (2005) 2385-2389
9. Chattopadhyay K., and Frieden C. Proteins 63 (2006) 327-335
10. Chattopadhyay K., Saffarian S., Elson E.L., and Frieden C. Proceedings of the National Academy of Sciences of the United States of America 99 (2002) 14171-14176
11. Chattopadhyay K., Zhong S., Yeh S.R., Rousseau D.L., and Frieden C. Biochemistry 41 (2002) 4040-4047
12. Li H., and Frieden C. Biochemistry 45 (2006) 6272-6278
13. Li H., and Frieden C. The Journal of Biological Chemistry 280 (2005) 38556-38561
14. Li H., and Frieden C. Biochemistry 44 (2005) 2369-2377
15. Ragona L., Catalano M., Luppi M., Cicero D., Eliseo T., Foote J., Fogolari F., Zetta L., and Molinari H. The Journal of Biological Chemistry 281 (2006) 9697-9709
16. Guariento M., Raimondo D., Assfalg M., Zanzoni S., Pesente P., Ragona L., Tramontano A., and Molinari H. Proteins 70 (2008) 462-472
17. Tan N.S., Shaw N.S., Vinckenbosch N., Liu P., Yasmin R., Desvergne B., Wahli W., and Noy N. Molecular and Cellular Biology 22 (2002) 5114-5127
18. Nakahara M., Furuya N., Takagaki K., Sugaya T., Hirota K., Fukamizu A., Kanda T., Fujii H., and Sato R. The Journal of Biological Chemistry 280 (2005) 42283-42289
19. Schanda P., Kupce E., and Brutscher B. Journal of Biomolecular NMR 33 (2005) 199-211
20. R. Keller (Ed.), The Computer Aided Resonance Assignment Tutorial 2004.
21. Wishart D.S., Bigam C.G., Yao J., Abildgaard F., Dyson H.J., Oldfield E., Markley J.L., and Sykes B.D. Journal of Biomolecular NMR 6 (1995) 135-140
22. Clarke J., and Fersht A.R. Folding & design 1 (1996) 243-254
23. In: Press W.H., Fannery B.P., Teukolsky S.A., and Vetterling W.T. (Eds). Numerical Recipes (1989), Cambridge University Press
24. Pace C.N. Methods in Enzymology 131 (1986) 266-280
25. Gal M., Schanda P., Brutscher B., and Frydman L. Journal of the American Chemical Society 129 (2007) 1372-1377
26. Bai Y., Milne J.S., Mayne L., and Englander S.W. Proteins 17 (1993) 75-86
27. Pace C.N., and Shaw K.L. Proteins Suppl. 4 (2000) 1-7
28. Ganesh O.K., Green T.B., Edison A.S., and Hagen S.J. Biochemistry 45 (2006) 13585-13596
29. Hagen S.J., Carswell C.W., and Sjolander E.M. Journal of Molecular Biology 305 (2001) 1161-1171
30. Sadqi M., Fushman D., and Munoz V. Nature 442 (2006) 317-321
31. Capaldi S., Guariento M., Saccomani G., Fessas D., Perduca M., and Monaco H.L. The Journal of Biological Chemistry 282 (2007) 31008-31018
32. Huyghues-Despointes B.M., Scholtz J.M., and Pace C.N. Nature Structural Biology 6 (1999) 910-912
33. Huyghues-Despointes B.M., Pace C.N., Englander S.W., and Scholtz J.M. Methods in Molecular Biology (Clifton N.J) 168 (2001) 69-92
34. Makhatadze G.I., Clore G.M., and Gronenborn A.M. Nature Structural Biology 2 (1995) 852-855
35. Chatterjee A., Krishna Mohan P.M., Prabhu A., Ghosh-Roy A., and Hosur R.V. Biochimie 89 (2007) 117-134
36. Ropson I.J., Boyer J.A., and Dalessio P.M. Biochemistry 45 (2006) 2608-2617
37. Ignatova Z., and Gierasch L.M. Biochemistry 44 (2005) 7266-7274
38. Silow M., and Oliveberg M. Proceedings of the National Academy of Sciences of the United States of America 94 (1997) 6084-6086
39. Sessler R.J., and Noy N. Molecular Cell 18 (2005) 343-353
40. Ayers S.D., Nedrow K.L., Gillilan R.E., and Noy N. Biochemistry 46 (2007) 6744-6752
41. Sukumar M., and Gierasch L.M. Folding & design 2 (1997) 211-222
42. Rotondi K.S., and Gierasch L.M. Biochemistry 42 (2003) 7976-7985
43. Clark P.L., Liu Z.P., Rizo J., and Gierasch L.M. Nature Structural biology 4 (1997) 883-886
44. Liu Z.P., Rizo J., and Gierasch L.M. Biochemistry 33 (1994) 134-142
45. Clark P.L., Weston B.F., and Gierasch L.M. Folding & design 3 (1998) 401-412
46. Clark P.L., Liu Z.P., Zhang J., and Gierasch L.M. Protein Science 5 (1996) 1108-1117
47. Li H., and Frieden C. Proceedings of the National Academy of Sciences of the United States of America 104 (2007) 11993-11998
48. Rotondi K.S., Rotondi L.F., and Gierasch L.M. Biophysical Chemistry 100 (2003) 421-436
49. Dalessio P.M., Boyer J.A., McGettigan J.L., and Ropson I.J. Biochemistry 44 (2005) 3082-3090