Rate of intrachain contact formation in an unfolded protein: Temperature and denaturant effects

Journal of Molecular Biology

Volumn 305, Issue 5, 2001, Pages 1161-1171

  Hagen, Stephen J ^a   Carswell, Caleb W ^a   Sjolander, Erik M ^a  

^a UNIVERSITY OF FLORIDA   (United States)

Author keywords

Cytochrome c; Denatured state; Energy landscape; Kinetics; Protein folding

Indexed keywords

CYTOCHROME C; HEME DERIVATIVE; HISTIDINE; METHIONINE;

ARTICLE; CONCENTRATION RESPONSE; DIFFUSION; ENERGY TRANSFER; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEIN FOLDING; TEMPERATURE SENSITIVITY;

ARRHENIUS; EQUUS CABALLUS;

EID: 0035793222     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.4366     Document Type: Article

References (44)

1. Fast kinetics and mechanisms in protein folding
2. Diffusion-limited contact formation in unfolded cytochrome c: Estimating the maximum rate of protein folding
3. Rate of intrachain diffusion of unfolded cytochrome c
4. Fast events in protein folding initiated by nanosecond laser photolysis
5. The speed limit for protein folding measured by triplet-triplet energy transfer
6. Measuring the rate of intramolecular contact formation in polypeptides
7. Funnels, pathways, and the energy landscape of protein folding: A synthesis
8. Diffusion in a rough potential
9. Toward an outline of the topography of a realistic protein-folding funnel
10. High resolution three dimensional structure of horse heart cytochrome c
11. Protein folding triggered by electron transfer
12. Protein folding triggered by electron transfer
13. Optical triggers of protein folding
14. Stepwise formation of α-helices during cytochrome c folding
15. Time-resolved circular dichroism studies of protein folding intermediates of cytochrome c
16. Multiple pathways on a protein folding energy landscape: Kinetic evidence
17. Identification of the primary non-native histidine ligand in unfolded cytochrome c
18. Thermodynamic and kinetic studies on the interconversion between the linear and circular forms of phage lambda DNA
19. On the probability of ring closure of lambda DNA
20. Intramolecular reaction in polycondensations. I. The theory of linear systems
21. Effects of ligation and folding on reduction potentials of heme proteins
22. Protein denaturation
23. Protein denaturation: A small-angle X-ray scattering study of the ensemble of unfolded states of cytochrome c
24. Diffusion-controlled intrachain reactions of polymers. II Results for a pair of terminal reactive groups
25. Diffusion controlled reaction of polymers
26. First passage time approach to diffusion controlled reactions
27. Intrachain loops in polymers: Effects of excluded volume
28. Theoretical predictions of folding pathways by using the proximity rule, with applications to bovine pancreatic trypsin inhibitor
29. Time scales for the formation of the most probable tertiary contacts in proteins with applications to cytochrome c
30. End-to-end cyclization of polymer chains
31. Analysis of the structure of ribonuclease A in native and partially denatured states by time-resolved nonradiative excitation energy transfer between site-specific extrinsic probes
32. Viscosity and density of aqueous solutions of urea and guanidine hydrochloride
33. Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition
34. Submillisecond protein folding kinetics studied by ultrarapid mixing
35. Evidence for barrier-limited protein folding kinetics on the microsecond time scale
36. Folding dynamics of the B1 domain of protein G explored by ultrarapid mixing
37. Two-state expansion and collapse of a polypeptide
38. Aspects of protein reaction dynamics: Deviations from simple behavior
39. Nonglassy kinetics in the folding of a single-domain protein
40. Singular value decomposition - Application to analysis of experimental-data
41. Role of ligand substitution in ferrocytochrome c folding
42. Diffusion can explain the nonexponential rebinding of carbon-monoxide to protoheme
43. Measuring denatured state energetics: Deviations from random coil behavior and implications for the folding of iso-1-cytochrome c