Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa

Proceedings of the National Academy of Sciences of the United States of America

Volumn 105, Issue 47, 2008, Pages 18413-18418

  Vega Thurber, Rebecca L ^a,c   Barott, Katie L ^a   Hall, Dana ^a   Liu, Hong ^a   Rodriguez Mueller, Beltran ^a   Desnues, Christelle ^a,d   Edwards, Robert A ^a,b,e   Haynes, Matthew ^a   Angly, Florent E ^a   Wegley, Linda ^a   Rohwer, Forest L ^a,b  

^a SAN DIEGO STATE UNIVERSITY   (United States)

^b SAN DIEGO STATE UNIVERSITY   (United States)

^c FLORIDA INTERNATIONAL UNIVERSITY   (United States)

^d TIMONE HOSPITAL   (France)

^e ARGONNE NATIONAL LABORATORY   (United States)

Author keywords

Coral reefs; Disease; Herpesviridae; Viral like particles; Virome

Indexed keywords

ARTICLE; CONTROLLED STUDY; CORAL; CORAL REEF; GENOME ANALYSIS; HERPES VIRUS; MYCOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PORITES COMPRESSA; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; TEMPERATURE STRESS; VIRUS INFECTION; VIRUS PARTICLE;

ANIMALS; ANTHOZOA; GENOMICS; HERPESVIRIDAE; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; VIRUS REPLICATION;

ANTHOZOA; BACTERIA (MICROORGANISMS); CNIDARIA; EUKARYOTA; HERPES; HERPESVIRIDAE; HYDRA; NEMATOSTELLA; PORITES COMPRESSA;

EID: 57449102600     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0808985105     Document Type: Article

References (66)

1. Harvell CD, et al. (1999) Review: Marine ecology - Emerging marine diseases - Climate links and anthropogenic factors. Science 285:1505-1510.
2. Carpenter KE, et al. (2008) One-third of reef-building corals face elevated extinction risk from climate change and local impacts. Science 321:560-563.
3. Remily ER, Richardson LL (2006) Ecological physiology of a coral pathogen and the coral reef environment. Microbial Ecol 51:345-352.
4. Ward JR, Lafferty KD (2004) The elusive baseline of marine disease: Are diseases in ocean ecosystems increasing? PLoS Biol 2:542-547.
5. Rosenberg E, Ben-Haim Y (2002) Microbial diseases of corals and global warming. Environ Microbiol 4:318-326.
6. Cooney RP, et al. (2002) Characterization of the bacterial consortium associated with black band disease in coral using molecular microbiological techniques. Environ Microbiol 4:401-413.
7. Pantos O, et al. (2003) The bacterial ecology of a plague-like disease affecting the Caribbean coral Montastrea annularis. Environ Microbiol 5:370-382.
8. Ritchie KB (2006) Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol-Prog Ser 322:1-14.
9. Rohwer F, Breitbart M, Jara J, Azam F, Knowlton N (2001) Diversity of bacteria associated with the Caribbean coral Montastraea franksi. Coral Reefs 20:85-91.
10. Rohwer F, Seguritan V, Azam F, Knowlton N (2002) Diversity and distribution of coral-associated bacteria. Mar Ecol Prog Ser 243:1-10.
11. Kramarsky-Winter E, et al. (2006) Identification of a protist-coral association and its possible ecological role. Mar Ecol Prog Ser 317:67-73.
12. Wegley L, et al. (2004) Coral-associated archaea. Mar Ecol Prog Ser 273:89-96.
13. Kellogg CA (2004) Tropical Archaea: Diversity associated with the surface microlayer of corals. Mar Ecol-Prog Ser 273:81-88.
14. Lesser MP, Mazel CH, Gorbunov MY, Falkowski PG (2004) Discovery of symbiotic nitrogen-fixing cyanobacteria in corals. Science 305:997-1000.
15. Kushmaro A, Rosenberg E, Fine M, Loya Y Bleaching of the coral Oculina patagonica by Vibrio AK-1. Mar Ecol-Prog Ser 147:159-165, 1997.
16. Cervino JM, Hayes R, Goreau TJ, Smith GW (2004) Zooxanthellae regulation in yellow blotch/band and other coral diseases contrasted with temperature related bleaching: In situ destruction vs expulsion. Symbiosis 37:63-85.
17. Wetz JJ, et al. (2004) Presence, infectivity, and stability of enteric viruses in seawater: Relationship to marine water quality in the Florida Keys. Mar Pollut Bull 48:698-704.
18. Griffin DW, et al. (1999) Detection of viral pathogens by reverse transcriptase PCR and of microbial indicators by standard methods in the canals of the Florida Keys. Appl Environ Microb 65:4118-4125.
19. Seymour JR, Patten N, Bourne DG, Mitchell JG (2005) Spatial dynamics of virus-like particles and heterotrophic bacteria within a shallow coral reef system. Mar Ecol Prog Ser 288:1-8.
20. Hewson I, Vargo GA, Fuhrman JA (2003) Bacterial diversity in shallow oligotrophic marine benthos and overlying waters: Effects of virus infection, containment, and nutrient enrichment. Microbial Ecol 46:322-336.
21. Patten NL, Seymour JR, Mitchell AG (2006) Flow cytometric analysis of virus-like particles and heterotrophic bacteria within coral-associated reef water. J Mar Biol Assoc Uk 86:563-566.
22. Wilson WH, Chapman DM (2001) Observation of virus-like particles in thin sections of the plumose anemone, Metridium senile. J Mar Biol Assoc Uk 81:879-880.
23. Meints RH, Vanetten JL, Kuczmarski D, Lee K, Ang B (1981) Viral-infection of the symbiotic chlorella-like alga present in Hydra-viridis. Virology 113:698-703.
24. Van Etten JL, Meints RH (1999) Giant viruses infecting algae. Annu Rev Microbiol 53:447-494.
25. Davy SK, et al. (2006) Viruses: Agents of coral disease? Dis Aquat Organ 69:101-110.
26. Lohr J, Munn CB, Wilson WH (2007) Characterization of a latent virus-like infection of symbiotic zooxanthellae. Appl Environ Microb 73:2976-2981.
27. Frias-Lopez J, Zerkle AL, Bonheyo GT, Fouke BW (2002) Partitioning of bacterial communities between seawater and healthy, black band diseased, and dead coral surfaces. Appl Environ Microb 68:2214-2228.
28. Davy JE, Patten NL (2007) Morphological diversity of virus-like particles within the surface microlayer of scleractinian corals. Aquatic Microb Ecol 47:37-44.
29. Patten NL, Harrison PL, Mitchell JG (2008) Prevalence of virus-like particles within a staghorn scleractinian coral (Acropora muricata) from the Great Barrier Reef. Coral Reefs, 10.1007/s00338-008-0356-9.
30. Wegley L, Edwards R, Rodriguez-Brito B, Liu H, Rohwer F (2007) Metagenomic analysis of the microbial community associated with the coral Porites astreoides. Environ Microbiol 9:2707-2719.
31. Marhaver KL, Edwards RA, Rohwer F (2008) Viral communities associated with healthy and bleaching corals. Environ Microbiol 10:2277-2286.
32. Bruno JF, et al. (2007) Thermal stress and coral cover as drivers of coral disease outbreaks. PLoS Biol 5:1220-1227.
33. Kuntz NM, Kline DI, Sandin SA, Rohwer F (2005) Pathologies and mortality rates caused by organic carbon and nutrient stressors in three Caribbean coral species. Mar Ecol-Prog Ser 294:173-180.
34. Kleypas JA, et al. (1999) Geochemical consequences of increased atmospheric carbon dioxide on coral reefs. Science 284:118-120.
35. Shackelton LA, Holmes EC (2004) The evolution of large DNA viruses: Combining genomic information of viruses and their hosts. Trends Microbiol 12:458-465.
36. Angly FE, et al. (2006) The marine viromes of four oceanic regions. PLoS Biol 4:2121-2131.
37. Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA eds (2005) Virus Taxonomy: Classification and Nomenclature of Viruses (Elservier, Amsterdam), Vol VIII.
38. Lawrence JG, Hatfull GF, Hendrix RW (2002) Imbroglios of viral taxonomy: Genetic exchange and failings of phenetic approaches. J Bacteriol 184:4891-4905.
39. Gronenborn B (2004) Nanoviruses: Genome organization and protein function. Vet Microbiol 98:103-109.
40. Herniou EA, Olszewski JA, O'Reilly DR, Cory JS (2004) Ancient coevolution of baculo-viruses and their insect hosts. J Virol 78:3244-3251.
41. Stoltz DB, Krell P, Summers MD, Vinson SB (1984) Polydnaviridae - a proposed Family of insect viruses with segmented, double-stranded, circular DNA genomes. Intervirology 21:1-4.
42. Webb BA, et al. (2006) Polydnavirus genomes reflect their dual roles as mutualists and pathogens. Virology 347:160-174.
43. Wommack KE, Bhavsar J, Ravel J (2008) Metagenomics: Read length matters. Appl Environ Microb 74:1453-1463.
44. Dolan A, Jamieson FE, Cunningham C, Barnett BC, McGeoch DJ (1998) The genome sequence of herpes simplex virus type 2. J Virol 72:2010-2021.
45. Mcgeoch DJ, et al. (1988) The complete DNA-sequence of the long unique region in the genome of Herpes-Simplex Virus Type-1. J Gen Virol 69:1531-1574.
46. Tyler SD, Severini A (2006) The complete genome sequence of herpesvirus papio 2 (Cercopithecine herpesvirus 16) shows evidence of recombination events among various progenitor herpesviruses. J Virol 80:1214-1221.
47. Perelygina L, et al. (2003) Complete sequence and comparative analysis of the genome of herpes B virus (Cercopithecine herpesvirus 1) from a rhesus monkey. J Virol 77:6167-6177.
48. Bahr U, Darai G (2001) Analysis and characterization of the complete genome of tupaia (tree shrew) herpesvirus. J Virol 75:4854-4870.
49. Song WJ, et al. (2004) Functional genomics analysis of Singapore grouper iridovirus: Complete sequence determination and proteomic analysis. J Virol 78:12576-12590.
50. Legoff J, et al. (2006) Real-time PCR quantification of genital shedding of herpes simplex virus (HSV) and human immunodeficiency virus (HIV) in women co-infected with HSV and HIV. J of Clin Microbiol 44:423-432.
51. Putnam NH, et al. (2007) Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317:86-94.
52. Putnam NH, et al. (2007) Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317:86-94.
53. Smith LD, Hughes TP (1999) An experimental assessment of survival, reattachment, and fecundity of coral fragments. J Exp Mar Biol Ecol 235:147-164.
54. Spits C, et al. (2006) Optimization and evaluation of single-cell whole, genome multiple displacement amplification. Hum Mutat 27:496-503.
55. Pinard R, et al. (2006) Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing. BMC Genomics 7.
56. Dean FB, et al. (2002) Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci USA 99:5261-5266.
57. Knowlton N, Rohwer F (2003) Multispecies microbial mutualisms on coral reefs: The host as a habitat. Am Nat 162:S51-S62.
58. Hoegh-Guldberg O (1999) Climate change, coral bleaching and the future of the world's coral reefs. Mar Freshwater Res 50:839-866.
59. Fitt WK, Brown BE, Warner ME, Dunne RP (2001) Coral bleaching: Interpretation of thermal tolerance limits and thermal thresholds in tropical corals. Coral Reefs 20:51-65.
60. Jones RJ, Bowyer J, Hoegh-Guldberg O, Blackall LL (2004) Dynamics of a temperature-related coral disease outbreak. Mar Ecol-Prog Ser 281:63-77.
61. Ben-Haim Y, Zicherman-Keren M, Rosenberg E (2003) Temperature-regulated bleaching and lysis of the coral Pocillopora damicornis by the novel pathogen Vibrio coral-liilyticus. Appl Environ Microb 69:4236-4242.
62. Alker AP, Smith GW, Kim K (2001) Characterization of Aspergillus sydowii, a fungal pathogen of Caribbean sea fan corals. Hydrobiologia 460:105-111.
63. McGeoch DJ, Rixon FJ, Davison AJ (2006) Topics in herpesvirus genomics and evolution. Virus Res 117:90-104.
64. Davison AJ, et al. (2005) A novel class of herpesvirus with bivalve hosts. J Gen Virol 86:41-53.
65. Alba MM, Das RJ, Orengo CA, Kellam P (2001) Genomewide function conservation and phylogeny in the herpesviridae. Genome Res 11:43-54.
66. Davison AJ Evolution of the herpesviruses. Vet Microbiol 86:69-88, 2002.