The development and mapping of functional markers in Fragaria and their transferability and potential for mapping in other genera

Theoretical and Applied Genetics

Volumn 114, Issue 2, 2007, Pages 373-384

  Sargent, D J ^a   Rys, A ^a   Nier, S ^a   Simpson, D W ^a   Tobutt, K R ^a  

^a EAST MALLING RESEARCH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; ENZYME KINETICS; GENES; MAPPING; REACTION KINETICS;

FUNCTIONAL MARKERS; POLYMERASE CHAIN REAQCTION (PCR); PRIMERS;

GENETIC ENGINEERING;

PRIMER DNA;

APPLE; ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; GENETIC MARKER; GENETICS; ROSACEAE; STRAWBERRY;

CHROMOSOME MAPPING; DNA PRIMERS; FRAGARIA; GENETIC MARKERS; MALUS; ROSACEAE;

FRAGARIA; FRAGARIA NUBICOLA; FRAGARIA VESCA; FRAGARIA VIRIDIS; FRAGARIA X ANANASSA; MALUS; MALUS X DOMESTICA; PRUNUS; ROSACEAE;

EID: 33845894977     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0441-9     Document Type: Article

References (36)

1. Aranzana MJ, Pineda A, Cosson P, Dirlewanger E, Ascasibar J, Cipriani G, Ryder CD, Testolin R, Abbot A, King GJ, Iezzoni AF, Arús P (2003) A set of simple sequence repeat (SSR) markers covering the Prunus genome. Theor Appl Genet 106:819-825
2. Bassil NV, Gunn M, Folta K, Lewers K (2006) Microsatellite markers for Fragaria from 'Strawberry Festival' expressed sequence tags. Mol Ecol Notes 6:473-476
3. Blair MW, Pedraza F, Buendia HF, Gaitán Solìs E, Beebe SE, Gepts P, Tohme J (2003) Development of a genome-wide anchored microsatellite map for common bean (Phaseolus vulgaris L.). Theor Appl Genet 107:1362-1374
4. Boŝković R, Tobutt KR (1998) Inheritance and linkage relationships of isoenzymes in two interspecific cherry progenies. Euphytica 103:273-286
5. Casasoli M, Derory J, Morera-Dutrey C, Brendel O, Porth I, Guehl JM, Villani F, Kremer A (2006) Comparison of quantitative trait loci for adaptive traits between oak and chestnut based on an expressed sequence tag consensus map. Genetics 172:533-546
6. Chevreau E, Laurens F (1987) The pattern of inheritance in apple (Malus x domestica Borkh.)-Further results from leaf isozyme analysis. Theor Appl Genet 75:90-95
7. Decroocq V, Favé MG, Hagen L, Bordenave L, Decroocq S (2003) Development and transferability of apricot and grape EST microsatellite markers across taxa. Theor Appl Genet 106:912-922
8. Deng C, Davis TM (2001) Molecular identification of the yellow fruit color (c) locus in diploid strawberry: a candidate gene approach. Theor Appl Genet 103:316-322
9. Dirlewanger E, Cosson P, Tavaud M, Aranzana MJ, Poizat C, Zanetto A, Arùs P, Laigret F (2002) Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.). Theor Appl Genet 105:127-138
10. Dirlewanger E, Graziano E, Joobeur T, Garriga-Calderé F, Cosson P, Howad W, Arùs P (2004) Comparative mapping and marker-assisted selection in Rosaceae fruit crops. Proc Natl Acad Sci USA 101:9891-9896
11. Doganlar S, Frary A, Daunay M, Lester RN, Tanksley SD (2002) A comparative genetic linkage map of eggplant (Solanum melongena) and its implications for genome evolution in the Solanaceae. Genetics 161:1697-1711
12. Etienne C, Rothan C, Moing A, Plomion C, Bodenes C, Svanella-Dumas L, Cosson P, Pronier V, Monet R, Dirlewanger E (2002) Candidate genes and QTLs for sugar and organic acid content in peach [Prunus persica (L.) Batsch]. Theor Appl Genet 105:145-159
13. Fulton TM, Van der Hoeven R, Eannetta NT, Tanksley SD (2002) Identification, analysis and utilization of conserved ortholog set markers for comparative genomics in higher plants. Plant Cell 14:1457-1467
14. Hadonou AM, Sargent DJ, Wilson F, James CM, Simpson DW (2004) Development of microsatellite markers in Fragaria, their use in genetic diversity analysis and their potential for genetic linkage mapping. Genome 47:1-14
15. 2 progeny. Theor Appl Genet 97:1034-1041
16. Jung S, Jesudurai C, Staton M, Du ZD, Ficklin S, Cho IH, Abbott A, Tomkins J, Main D (2004) GDR (Genome Database for Rosaceae): integrated web resources for Rosaceae genomics and genetics research. BMC Bioinformatics 5:130
17. Keniry A, Hopkins CJ, Jewell E, Morrison B, Spangenberg GC, Edwards D, Batley J (2006) Identification and characterization of simple sequence repeat (SSR) markers from Fragaria x ananassa expressed sequences. Mol Ecol Notes 6:319-322
18. Krutovsky KV, Troggio M, Brown GR, Jermstad KD, Neale DB (2004) Comparative mapping in the Pinaceae. Genetics 168:447-461
19. Lewers KS, Styan SMN, Hokanson SC, Bassil NV (2005) Strawberry GenBank-derived and genomic simple sequence repeat (SSR) markers and their utility with strawberry, blackberry, and red and black raspberry. J Am Soc Hortic Sci 130:102-115
20. Li JZ, Sjakste TG, Röder MS, Ganal MW (2003) Development and genetic mapping of 127 new microsatellite markers in barley. Theor Appl Genet 107:1021-1027
21. Liebhard R, Koller B, Gianfranceschi L, Gessler C (2003) Creating a saturated reference map for the apple (Malus x domestica Borkh.) genome. Theor Appl Genet 106:1497-1508
22. Lukens L, Zou F, Lydiate D, Parkin I, Osborn T (2003) Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana. Genetics 164:359-372
23. Maliepaard C, Alston FH, van Arkel G, Brown LM, Chevreau E, Dunemann F, Evans KM, Gardiner S, Guilford P, van Heusden AW, Janse J, Laurens F, Lynn JR, Manganaris AG, den Nijs APM, Periam N, Rikkerink E, Roche P, Ryder C, Sansavini S, Schmidt H, Tartarini S, Verhaegh JJ, Vrielink-van Ginkel M, King GJ (1998) Aligning male and female linkage maps of apple (Malus pumila Mill.) using multi-allelic markers. Theor Appl Genet 97:60-73
24. Newcomb RD, Crowhurst RN, Gleave AP, Rikkerink EHA, Allan AC, Beuning LL, Bowen JH, Gera E, Jamieson KR, Janssen BJ, Laing WA, McArtney S, Nain B, Ross GS, Snowden KC, Souleyre EJF, Walton EF, Yauk YK (2006) Analyses of expressed sequence tags from apple. Plant Physiol 141:147-166
25. Nier S, Simpson DW, Tobutt KR, Sargent DJ (2006) Construction of a genetic linkage map of an interspecific diploid Fragaria BC1 mapping population (F. vesca 815 x [F. vesca 815 x F. viridis 903]) and its comparison to the Fragaria reference map (FVxFN). J Hortic Sci Biotechnol 81:645-650
26. Rozen S, Skaletsky HJ (1998) PRIMER 3. Code available at http://www-genome.wi.mit.edu/genome_software/other/primer3.html
27. Sargent DJ, Hadonou AM, Simpson DW (2003) Development and characterisation of polymorphic microsatellite markers from Fragaria viridis, a wild diploid strawberry. Mol Ecol Notes 3:550-552
28. Sargent DJ, Davis TM, Tobutt KR, Wilkinson MJ, Battey NH, Simpson DW (2004) A genetic linkage map of microsatellite, gene specific and morphological markers in diploid Fragaria. Theor Appl Genet 109:1385-1391
29. Sargent DJ, Clarke J, Simpson DW, Tobutt KR, Arús P, Monfort A, Vilanova S, Denoyes-Rothan B, Rousseau M, Folta KM, Bassil NV, Battey NH (2006) An enhanced microsatellite map of diploid Fragaria. Theor Appl Genet 112:1349-1359
30. Silva C, Garcia-Mas J, Sanchez AM, Arús P, Oliveira M (2005) Looking into flowering time in almond (Prunus dulcis (Mill.) D. A. Webb): the candidate gene approach. Theor Appl Genet 110:959-968
31. Tanksley SD, Ganal MW, Prince JP, De Vicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB, Messeguer R, Miller JC, Miller L, Paterson AH, Pineda O, Roder MS, Wing RA, Wu W, Young ND (1992) High density molecular linkage maps of the tomato and potato genomes. Genetics 132:1141-1160
32. Van Ooijen JW, Voorrips RE (2001) Joinmap 3.0: software for the calculation of genetic linkage maps. Plant Research International, Wageningen, the Netherlands
33. Voorrips RE (2002) Mapchart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77-78
34. Wei H, Fu Y, Arora R (2005) Intron-flanking EST-PCR markers: from genetic marker development to gene structure analysis in Rhododendron. Theor Appl Genet 111:1347-1356
35. Wilson WA, Harrington SE, Woodman WL, Lee M, Sorrells ME, McCouch SR (1999) Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize and the domesticated panicoids. Genetics 153:453-473
36. Yamamoto T, Kimura T, Shoda M, Imai T, Saito T, Sawamura Y, Kotobuki K, Hayashi T, Matsuta N (2002) Genetic linkage maps constructed by using an interspecific cross between Japanese and European pears. Theor Appl Genet 106:9-18