Plant genome archaeology: evidence for conserved ancestral chromosome segments in dicotyledonous plant species

Plant Biotechnology Journal

Volumn 1, Issue 2, 2003, Pages 91-99

  Dominguez, Isabelle ^a   Graziano, Enrique ^b   Gebhardt, Christiane ^c   Barakat, Abdelali ^d   Berry, Simon ^a   Arús, Pere ^b   Delseny, Michel ^d   Barnes, Stephen ^a  

^a SES Europe   (Belgium)

^b IRTA   (Spain)

^c Max Plack Institute for Breeding Research   (Germany)

^d UNIVERSITÉ DE PERPIGNAN   (France)

Author keywords

Arabidopsis thaliana; Beta vulgaris; Helianthus annuus; Prunus; Solanum tuberosum; synteny

Indexed keywords

EID: 1542368249     PISSN: 14677644     EISSN: 14677652     Source Type: Journal    
DOI: 10.1046/j.1467-7652.2003.00009.x     Document Type: Article

References (37)

1. Barnes, S., Massaro, G., Lefèbvre, M., Kuiper, M. and Verstege, E. (1996) A combined RFLP and AFLP genetic map for sugar beet. Proceedings of the 59th IIRB Congress, pp. 555–560. Brussells: IIRB.
2. Bennetzen, J.L. (2000) Comparative sequence analysis of plant nuclear genomes: microcolinearity and its many exceptions. Plant Cell, 12, 1021–1029.pmid/10899971
3. Berry, S.T., Leon, A.J., Challis, P., Livini, C., Jones, R., Hanfrey, C.C., Griffiths, S. and Roberts, A. (1996) Construction of a high density, composite RFLP linkage map for cultivated sunflower (Helianthus annuus L.). Proceedings of the 14th International Sunflower Conference, China, Vol. 2, pp. 1155–1160. Paris: International Sunflower Association.
4. th Sunflower Research Workshop, Fargo, pp. 113–118. Fargo: National Sunflower Association.
5. Blanc, G., Barakat, A., Guyot, R., Cooke, R. and Delseny, M. (2000) Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell, 12, 1093–1101.pmid/10899976
6. Bonierbale, M., Plaisted, R.L. and Tanksley, S.D. (1988) RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato. Genetics, 120, 1095–1103.
7. Chase, M.W., Soltis, D.E., Olmstead, R.G., Morgan, D., Les, D.H., Mishler, B.H., Duvall, M.R., Price, R.A., Hills, H.G., Qiu, Y.-L., Kron, K.A., Rettig, J.H., Conti, E., Palmer, J.D., Manhart, J.R., Sytsma, K.J., Michaels, H.J., Kress, W.J., Karol, K.G., Clark, W.D., Hedrén, M., Gaut, B.S., Jansen, R.K., Kim, K.-J., Wimpee, C.F., Smith, J.F., Furnier, G.R., Straus, S.H., Xiang, Q.-Y., Plunkett, G.M., Soltis, P.S., Swensen, S.M., Williams, S.E., Gadek, P.A., Quinn, C.J., Eguiarte, L.E., Golenberg, E., Learn, G.H., Graham, S.W., Barrett, S.C.H., Dayanandan, S. and Albert, V.A. (1993) Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Ann. Mo. Bot. Gard., 80, 528–580.
8. Dean, C. and Schmidt, R. (1995) Plant genomes: a current molecular description. Ann. Rev. Plant Physiol. Plant Mol. Biol. 46, 395–418.
9. Devos, K.M. and Gale, M.D. (2000) Genome relationships: The grass model in current research. Plant Cell, 12, 637–646. pmid/10810140
10. Freeling, M. (2001) Grasses as a single genetic system. Reassessment 2001. Plant Physiol. 125, 1191–1197.pmid/11244100
11. Gebhardt, C., Ritter, E., Barone, A., Debener, T., Walkemeier, B., Schachtschabel, U., Kaufman, H., Thompson, R.D., Bonierbale, M.W., Ganal, M.W., Tanksley, S.D. and Salamini, F. (1991) RFLP maps of potato and their alignment with the homoeologous tomato genome. Theor. Appl. Genet. 83, 49–57.
12. Gebhardt, C., Walkemeier, B., Henselewski, H., Barakat, A., Delseny, M. and Stuber, K. (2003) Comparative mapping between potato (Solanum tuberosum) and Arabidopsis thaliana reveals structurally conserved domains and ancient duplications in the potato genome. Plant J. 32.
13. Grant, D., Cregan, P. and Shoemaker, R.C. (2000) Genome organisation in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis. Proc. Natl Acad. Sci. USA, 97, 4168–4173.pmid/10759555
14. Helentjaris, T., Weber, D. and Wright, S. (1988) Identification of the genomic locations of duplicate nucleotide sequences in maize by analysis of restriction fragment length polymorphism (RFLP). Genetics, 118, 353–363.
15. 2 progeny. Theor. Appl. Genet. 97, 1034–1041.
16. Ku, H.-M., Liu, J., Doganlar, S. and Tanksley, S.D. (2001) Exploitation of Arabidopsis-tomato synteny to construct a high-resolution map of the ovate-containing region in tomato chromosome 2. Genome, 44, 470–475.pmid/11444707
17. Ku, H.-M., Vision, T., Liu, J. and Tanksley, S.D. (2000) Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny. Proc. Natl. Acad. Sci. USA, 97, 9121–9126.pmid/10908680
18. Lagercrantz, U. (1998) Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements. Genetics, 150, 1217–1228.pmid/9799273
19. Lagercrantz, U. and Lydiate, D.J. (1996) Comparative genome mapping in Brassica. Genetics, 144, 1903–1910.pmid/8978073
20. Lee, J.M., Grant, D., Vallejos, C.E. and Shoemaker, R.C. (2001) Genome organisation in dicots. II. Arabidopsis as a ‘bridging species’ to resolve genome evolution events among legumes. Theor. Appl. Genet. 103, 765–773.
21. Lynch, M. and Conery, J.S. (2000) The evolutionary fate and consequences of duplicate genes. Science, 290, 1151–1155.pmid/11073452
22. Materson, J. (1994) Stomatal size in fossil plants: evidence for polyploidy in majority of angiosperms. Science, 264, 421–424.
23. Mayer, K., Murphy, G., Tarchini, R., Wambutt, R., Volckaert, G., Pohl, T., Düsterhöft, A., Stiekema, W., Entian, K.-D., Terryn, N., Lemcke, K., Haase, D., Hall, C.R., Van Dodeweerd, A.-M., Tingey, S.V., Mewes, H.-W., Bevan, M.W. and Bancroft, I. (2001) Conservation of microstructure between a sequenced region of the genome of rice and multiple segments of the genome of Arabidopsis thaliana. Genome Res. 11, 1167–1174. pmid/11435398
24. McGrath, J.M., Jansco, M.M. and Pichersky, E. (1993) Duplicate sequences with a similarity to expressed genes in the genome of Arabidopsis thaliana. Theor. Appl. Genet. 86, 880–888.
25. Mysore, K.S., Tuori, R.P. and Martin, G.B. (2001) Arabidopsis genome sequence as a tool for functional genomics. Genome Biol. 2, reviews 1003.1–1003.4.
26. Paterson, A.H. (1997) Comparative mapping of plant phenotypes. Plant Breed. Rev. 14, 13–37.
27. Prince, J.P., Pochard, E. and Tanksley, S.D. (1992) Construction of a molecular linkage map of pepper and a comparison of synteny with tomato. Genome, 36, 404–417.
28. Reinisch, A.J., Dong, J., Brubaker, C.L., Stelly, D.M., Wendel, J.F. and Paterson, A.H. (1994) A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: Chromosome organisation and evolution in a disomic polyploid genome. Genetics, 138, 829–847.pmid/7851778
29. Rossberg, M., Theres, K., Acarkan, A., Herreo, R., Schmitt, T., Schumacher, K., Schmitz, G. and Schmidt, R. (2001) Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis and Capsella genomes. Plant Cell, 13, 979–988.pmid/11283350
30. Salse, J., Piégu, B., Cooke, R. and Delseny, M. (2002) Synteny between Arabidopsis thaliana and rice at the genome level: a tool to identify conservation in the ongoing rice genome sequencing project. Nucl. Acids Res. 30, 2316–2328.
31. SanMiguel, P. and Bennetzen, J.L. (1998) Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons. Ann. Bot. 82, 37–44.
32. Shoemaker, R.C., Polzin, K., Labate, J., Specht, J., Brummer, E.C., Olson, T., Young, N., Concibidio, V., Wilcox, J., Tamulonis, J.P., Kochert, G. and Boerma, H.R. (1996) Genome duplication in soybean (Glycine subgenus soja). Genetics, 144, 329–338.pmid/8878696
33. Soltis, P.S., Soltis, D.E. and Chase, M.W. (1999) Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature, 402, 402–404.pmid/10586878
34. The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796–815.pmid/11130711
35. Vision, T.J., Brown, D.G. and Tanksley, S.D. (2000) The origins of genomic duplications in Arabidopsis. Science, 290, 2114–2117.pmid/11118139
36. Weedon, N.F., Muehlbauer, F.J. and Ladizinsky, G. (1992) Extensive conservation of linkage relationships between pea and lentil genetic maps. J. Hered. 83, 123–129.
37. Wolfe, K.H. (2001) Yesterday's polyploids and the mystery of diploidization. Nat. Rev. Genet. 2, 333–341.pmid/11331899