메뉴 건너뛰기




Volumn 9, Issue , 2008, Pages

NemaPath: Online exploration of KEGG-based metabolic pathways for nematodes

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

EID: 57049145743     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-525     Document Type: Article
Times cited : (22)

References (41)
  • 2
    • 33646180655 scopus 로고    scopus 로고
    • Soil-transmitted helminth infections: Ascariasis, trichuriasis, and hookworm
    • 10.1016/S0140-6736(06)68653-4
    • Bethony J Brooker S Albonico M Geiger SM Loukas A Diemert D Hotez PJ Soil-transmitted helminth infections: Ascariasis, trichuriasis, and hookworm The Lancet 2006, 367:1521-1532. 10.1016/S0140-6736(06)68653-4
    • (2006) The Lancet , vol.367 , pp. 1521-1532
    • Bethony, J.1    Brooker, S.2    Albonico, M.3    Geiger, S.M.4    Loukas, A.5    Diemert, D.6    Hotez, P.J.7
  • 4
    • 57049147912 scopus 로고    scopus 로고
    • NCBI: Complete Eukaryotic Taxonomy http://www.ncbi.nlm.nih.gov/genomes/ genlist.cgi?taxid=2759&type=0&name=Complete%20Eukaryota
    • NCBI: Complete Eukaryotic Taxonomy
  • 5
    • 57049173349 scopus 로고    scopus 로고
    • Mitreva Jasmer WormBook 2006, 23:1-21.
    • (2006) WormBook , vol.23 , pp. 1-21
    • Jasmer, M.1
  • 10
    • 33846038092 scopus 로고    scopus 로고
    • Pristionchus.org: A genome-centric database of the nematode satellite species Pristionchus pacificus
    • (Database) Epub 2006 Oct 24 1781148 17062617 10.1093/nar/gkl804
    • Dieterich C Roeseler W Sobetzko P Sommer RJ Pristionchus.org: A genome-centric database of the nematode satellite species Pristionchus pacificus Nucleic Acids Res 2007, 35(Database):D498-502. Epub 2006 Oct 24 1781148 17062617 10.1093/nar/gkl804
    • (2007) Nucleic Acids Res
    • Dieterich, C.1    Roeseler, W.2    Sobetzko, P.3    Sommer, R.J.4
  • 11
    • 0347755536 scopus 로고    scopus 로고
    • NEMBASE: A resource for parasitic nematode ESTs
    • (Database) 308753 14681449 10.1093/nar/gkh018
    • Parkinson J Whitton C Schmid R Thomson M Blaxter M NEMBASE: A resource for parasitic nematode ESTs Nucleic Acids Res 2004, 32(Database):D427-30. 308753 14681449 10.1093/nar/gkh018
    • (2004) Nucleic Acids Res
    • Parkinson, J.1    Whitton, C.2    Schmid, R.3    Thomson, M.4    Blaxter, M.5
  • 14
    • 10744220169 scopus 로고    scopus 로고
    • Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans
    • 327096 14762059 10.1101/gr.1524804
    • Mitreva M McCarter JP Martin J Dante M Wylie T Chiapelli B Pape D Clifton SW Nutman TB Waterston RH Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans Genome Res 2004, 14(2):209-20. 327096 14762059 10.1101/gr.1524804
    • (2004) Genome Res , vol.14 , Issue.2 , pp. 209-220
    • Mitreva, M.1    McCarter, J.P.2    Martin, J.3    Dante, M.4    Wylie, T.5    Chiapelli, B.6    Pape, D.7    Clifton, S.W.8    Nutman, T.B.9    Waterston, R.H.10
  • 16
    • 33747868144 scopus 로고    scopus 로고
    • KOBAS server: A web-based platform for automated annotation and pathway identification
    • (Web Server) 1538915 16845106 10.1093/nar/gkl167
    • Wu J Mao X Cai T Luo J Wei L KOBAS server: A web-based platform for automated annotation and pathway identification Nucleic Acids Res 2006, 34(Web Server):W720-4. 1538915 16845106 10.1093/nar/gkl167
    • (2006) Nucleic Acids Res
    • Wu, J.1    Mao, X.2    Cai, T.3    Luo, J.4    Wei, L.5
  • 17
    • 34547573469 scopus 로고    scopus 로고
    • ESTExplorer: An expressed sequence tag (EST) assembly and annotation platform
    • (Web Server) Epub 2007 Jun 1 1933243 17545197 10.1093/nar/gkm378
    • Nagaraj SH Deshpande N Gasser RB Ranganathan S ESTExplorer: An expressed sequence tag (EST) assembly and annotation platform Nucleic Acids Res 2007, 35(Web Server):W143-7. Epub 2007 Jun 1 1933243 17545197 10.1093/ nar/gkm378
    • (2007) Nucleic Acids Res
    • Nagaraj, S.H.1    Deshpande, N.2    Gasser, R.B.3    Ranganathan, S.4
  • 18
    • 23144431919 scopus 로고    scopus 로고
    • PathwayExplorer: Web service for visualizing high-throughput expression data on biological pathways
    • (Web Server) 2005 Jul 1 1160152 15980551
    • Mlecnik B Scheideler M Hackl H Hartler J Sanchez-Cabo F Trajanoski Z PathwayExplorer: Web service for visualizing high-throughput expression data on biological pathways Nucleic Acids Res 33(Web Server):W633-7. 2005 Jul 1 1160152 15980551
    • Nucleic Acids Res
    • Mlecnik, B.1    Scheideler, M.2    Hackl, H.3    Hartler, J.4    Sanchez-Cabo, F.5    Trajanoski, Z.6
  • 23
    • 4644350944 scopus 로고    scopus 로고
    • Unlocking the potential of the human genome with RNA interference
    • 10.1038/nature02870 15372045
    • Hannon GJ Rossi JJ Unlocking the potential of the human genome with RNA interference Nature 2004, 431:371-378. 10.1038/nature02870 15372045
    • (2004) Nature , vol.431 , pp. 371-378
    • Hannon, G.J.1    Rossi, J.J.2
  • 24
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • 811 10.1038/35888 9486653
    • Fire A Xu S Montgomery MK Kostas SA Driver SE Mello CC Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans Nature 1998, 391:6669-806. 811 10.1038/35888 9486653
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 28
    • 24644458584 scopus 로고    scopus 로고
    • Comparative genomics of nematodes
    • 10.1016/j.tig.2005.08.003 16099532
    • Mitreva M Blaxter ML Bird DM McCarter JP Comparative genomics of nematodes Trends Genet 2005, 21(10):573-581. 10.1016/j.tig.2005.08.003 16099532
    • (2005) Trends Genet , vol.21 , Issue.10 , pp. 573-581
    • Mitreva, M.1    Blaxter, M.L.2    Bird, D.M.3    McCarter, J.P.4
  • 29
    • 57049134001 scopus 로고    scopus 로고
    • Estimating novel potential drug targets of Plasmodium falciparum by analysing the metabolic network of knock-out strains in silico
    • 18313365
    • Fatumo S Plaimas K Mallm JP Schramm G Adebiyi E Oswald M Eils R Konig R Estimating novel potential drug targets of Plasmodium falciparum by analysing the metabolic network of knock-out strains in silico Infect Genet Evol 2008. 18313365
    • (2008) Infect Genet Evol
    • Fatumo, S.1    Plaimas, K.2    Mallm, J.P.3    Schramm, G.4    Adebiyi, E.5    Oswald, M.6    Eils, R.7    Konig, R.8
  • 30
    • 2442636351 scopus 로고    scopus 로고
    • Computational analysis of Plasmodium falciparum metabolism: Organizing genomic information to facilitate drug discovery
    • 479120 15078855 10.1101/gr.2050304
    • Yeh I Hanekamp T Tsoka S Karp PD Altman RB Computational analysis of Plasmodium falciparum metabolism: Organizing genomic information to facilitate drug discovery Genome Res 2004, 14(5):917-924. 479120 15078855 10.1101/gr.2050304
    • (2004) Genome Res , vol.14 , Issue.5 , pp. 917-924
    • Yeh, I.1    Hanekamp, T.2    Tsoka, S.3    Karp, P.D.4    Altman, R.B.5
  • 34
    • 33744979498 scopus 로고    scopus 로고
    • Identification and analysis of genes expressed in the adult filarial parasitic nematode Dirofilaria immitis
    • 10.1016/j.ijpara.2006.03.002
    • Yin Y Martin J McCarter JP Clifton SW Wilson RK Mitreva M Identification and analysis of genes expressed in the adult filarial parasitic nematode Dirofilaria immitis Int J Parasitol 2006 36 7 829 39 Epub 2006 Mar 31 10.1016/j.ijpara.2006.03.002 16697384
    • (2006) Int J Parasitol , vol.36 , pp. 829-839
    • Yin, Y.1    Martin, J.2    McCarter, J.P.3    Clifton, S.W.4    Wilson, R.K.5    Mitreva, M.6
  • 35
    • 56149121546 scopus 로고    scopus 로고
    • Intestinal Transcriptomes of Nematodes: Comparison of the Parasites Ascaris suum and Haemonchus contortus with the Free-living Caenorhabditis elegans
    • 2483350 18682827
    • Yin Y Martin J Abubucker S Scott AL McCarter JP Wilson RK Jasmer DP Mitreva M Intestinal Transcriptomes of Nematodes: Comparison of the Parasites Ascaris suum and Haemonchus contortus with the Free-living Caenorhabditis elegans PLoS Negl Trop Dis 2008. 2483350 18682827
    • (2008) PLoS Negl Trop Dis
    • Yin, Y.1    Martin, J.2    Abubucker, S.3    Scott, A.L.4    McCarter, J.P.5    Wilson, R.K.6    Jasmer, D.P.7    Mitreva, M.8
  • 37
    • 0345863935 scopus 로고    scopus 로고
    • The KEGG resource for deciphering the genome
    • (Database) 308797 14681412 10.1093/nar/gkh063
    • Kanehisa M Goto S Kawashima S Okuno Y Hattori M The KEGG resource for deciphering the genome Nucleic Acids Res 2004, 32(Database):D277-80. 308797 14681412 10.1093/nar/gkh063
    • (2004) Nucleic Acids Res
    • Kanehisa, M.1    Goto, S.2    Kawashima, S.3    Okuno, Y.4    Hattori, M.5
  • 38
    • 23044485115 scopus 로고    scopus 로고
    • Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers
    • 1179732 16034025 10.1093/nar/gki711
    • Green ML Karp PD Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers Nucleic Acids Res 2005, 33(13):4035-9. 1179732 16034025 10.1093/nar/gki711
    • (2005) Nucleic Acids Res , vol.33 , Issue.13 , pp. 4035-4039
    • Green, M.L.1    Karp, P.D.2
  • 40
    • 57049166428 scopus 로고    scopus 로고
    • NEMBASE3 http://www.nematodes.org/nembase3/
    • NEMBASE3
  • 41
    • 57049120126 scopus 로고    scopus 로고
    • WormBase http://www.wormbase.org
    • WormBase


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.