The canine hookworm genome: Analysis and classification of Ancylostoma caninum survey sequences

Molecular and Biochemical Parasitology

Volumn 157, Issue 2, 2008, Pages 187-192

  Abubucker, Sahar ^a   Martin, John ^a   Yin, Yong ^a   Fulton, Lucinda ^a   Yang, Shiaw Pyng ^a   Hallsworth Pepin, Kym ^a   Johnston, J Spencer ^b   Hawdon, John ^c   McCarter, James P ^a,d   Wilson, Richard K ^a   Mitreva, Makedonka ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

^c GEORGE WASHINGTON UNIVERSITY MEDICAL CENTER   (United States)

^d Divergence Inc   (United States)

Author keywords

Ancylostoma caninum; Comparative genomics; Expressed sequence tags; Genome; Genome survey sequences; Hookworm

Indexed keywords

ANCYLOSTOMA CANINUM; ARTICLE; BIOCHEMISTRY; CELL NUCLEUS; FLOW CYTOMETRY; GENE IDENTIFICATION; GENE SEQUENCE; GENOME; GENOMICS; HOOKWORM; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEOMICS; SEQUENCE HOMOLOGY;

ANCYLOSTOMA; ANIMALS; EXPRESSED SEQUENCE TAGS; GENOME, HELMINTH; GENOMICS; HELMINTH PROTEINS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

ANCYLOSTOMA CANINUM; ANCYLOSTOMATOIDEA; CANIDAE;

EID: 38049107974     PISSN: 01666851     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molbiopara.2007.11.001     Document Type: Article

References (30)

1. de Silva N.R., Brooker S., Hotez P.J., Montresor A., Engels D., and Savioli L. Soil-transmitted helminth infections: updating the global picture. Trends Parasitol 12 (2003) 547-551
2. Bethony J., Brooker S., Albonico M., et al. Soil-transmitted helminth infections: ascariasis, trichuriasis, and hookworm. Lancet 367 (2006) 1521-1532
3. Hawdon J.M., Jones B.F., Hoffman D.R., and Hotez P.J. Cloning and characterization of Ancylostoma-secreted protein. A novel protein associated with the transition to parasitism by infective hookworm larvae. J Biol Chem 271 (1996) 6672-6678
4. Hawdon J.M., Narasimhan S., and Hotez P.J. Ancylostoma secreted protein 2: cloning and characterization of a second member of a family of nematode secreted proteins from Ancylostoma caninum. Mol Biochem Parasitol 99 (1999) 149-165
5. Loukas A., Bethony J.M., Mendez S., et al. Vaccination with recombinant aspartic hemoglobinase reduces parasite load and blood loss after hookworm infection in dogs. PLoS Med 2 (2005) e296
6. de Pont A.C., Moons A.H., de Jonge E., et al. Recombinant nematode anticoagulant protein c2, an inhibitor of tissue factor/factor VIIa, attenuates coagulation and the interleukin-10 response in human endotoxemia. J Thromb Haemost 2 (2004) 65-70
7. Mahajan A.L., Tenorio X., Pepper M.S., et al. Progressive tissue injury in burns is reduced by rNAPc2. Burns 32 (2006) 957-963
8. Mitreva M., McCarter J.P., Arasu P., et al. Investigating hookworm genomes by comparative analysis of two Ancylostoma species. BMC Genomics 6 (2005) 58
9. Leroy S., Duperray C., and Morand S. Flow cytometry for parasite nematode genome size measurement. Mol Biochem Parasitol 128 (2003) 91-93
10. Bennett M.D., Leitch I.J., Price H.J., and Johnston J.S. Comparisons with Caenorhabditis (∼100 Mb) and Drosophila (∼175 Mb) using flow cytometry show genome size in Arabidopsis to be ∼157 Mb and thus ∼25% larger than the Arabidopsis initiative estimate of ∼125 Mb. Ann Botany (2003) 547-557
11. Schad G.A. Arrested development of Ancylostoma caninum in dogs: influence of photoperiod and temperature on induction of a potential to arrest. In: Meerovitch E. (Ed). Aspects of parasitology: a festschrift dedicated to the fiftieth anniversary of the Institute of Parasitology of McGill University (1982), McGill University, Montreal 361-391
12. Huang X., Wang J., Aluru S., Yang S.-P., and Hillier L. PCAP: a whole-genome assembly program. Genome Res. 13 (2003) 2164-2170
13. Bao Z., and Eddy S.R. Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res 12 (2002) 1152-1155
14. Griffiths-Jones S., Bateman A., Marshall M., Khanna A., and Eddy S.R. Rfam: an RNA family database. Nucleic Acids Res 31 (2003) 439-441
15. Jurka J., Kapitonov V.V., Pavlicek A., Klonowski P., Kohany O., and Walichiewicz J. Repbase update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 110 (2005) 462-467
16. Laha T., Loukas A., Wattanasatitarpa S., et al. The bandit, a new DNA transposon from a hookworm-possible horizontal genetic transfer between host and parasite. PloS Neglected Trop Dis 1 (2007) e35 10.1371/journal.pntd.0000035
17. Laha T., Kewgrai N., Loukas A., and Brindley P.J. The dingo non-long terminal repeat retrotransposons from the genome of the hookworm. Ancylostoma caninum Exp Parasitol 113 (2006) 142-153
18. Kapitonov V.V., and Jurka J. RAG1 Core and V(D)J recombination signal sequences were derived from transib transposons. PLoS Biol 3 (2005) e181
19. Ding L., Sabo A., Berkowicz N., et al. EAnnot: a genome annotation tool using experimental evidence. Genome Res 14 (2004) 2503-2509
20. Ranjit N., Jones M.K., Stenzel D.J., Gasser R.B., and Loukas A. A survey of the intestinal transcriptomes of the hookworms, Necator americanus and Ancylostoma caninum, using tissues isolated by laser microdissection microscopy. Int J Parasitol 36 (2006) 701-710
21. Wasmuth J.D., and Blaxter M.L. prot4EST: translating expressed sequence tags from neglected genomes. BMC Bioinformatics 5 (2004) 187
22. Wylie T., Martin J., Dante M., et al. Nematode.net: A Tool for Navigating Sequences from Parasitic and Free-Living Nematodes. Nucleic Acids Res 32 (2004) D423-D426
23. Kanehisa M., and Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28 (2006) 27-30
24. Apweiler R., Attwood T.K., Bairoch A., et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res 29 (2001) 37-40
25. Mulder N.J., Apweiler R., Attwood T.K., et al. New developments in the InterPro database. Nucleic Acids Res 35 (2007) D224-D228
26. Zdobnov E.M., and Apweiler R. InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17 (2001) 847-848
27. Finn R.D., Mistry J., Schuster-Bockler B., et al. Pfam: clans, web tools and services. Nucleic Acids Res 34 (2006) D247-D251
28. The Gene Ontology Consortium. Gene ontology: tool for the unification of biology. Nat Genet 25 (2000) 25-29
29. Kall L., Krogh A., and Sonnhammer E.L.L. A Combined transmembrane topology and signal peptide prediction method. J Mol Biol 338 (2004) 1027-1036
30. Margulies M., Egholm M., Altman W.E., et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437 (2005) 376-380