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Volumn 93, Issue 1, 2009, Pages 83-89

Quality of regulatory elements in Drosophila retrogenes

Author keywords

Drosophila; Regulatory motifs; Retrogene; Testis expression

Indexed keywords

TRANSCRIPTION FACTOR;

EID: 57049116526     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2008.09.006     Document Type: Article
Times cited : (4)

References (36)
  • 1
    • 0025864962 scopus 로고
    • Retroposons-seeds of evolution
    • Brosius J. Retroposons-seeds of evolution. Science 251 (1991) 753
    • (1991) Science , vol.251 , pp. 753
    • Brosius, J.1
  • 3
    • 34147128526 scopus 로고    scopus 로고
    • Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila
    • Bai Y., Casola C., Feschotte C., and Betran E. Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila. Genome Biol. 8 (2007) R11
    • (2007) Genome Biol. , vol.8
    • Bai, Y.1    Casola, C.2    Feschotte, C.3    Betran, E.4
  • 4
    • 0036906987 scopus 로고    scopus 로고
    • Retroposed new genes out of the X in Drosophila
    • Betrán E., Thornton K., and Long M. Retroposed new genes out of the X in Drosophila. Genome Res. 12 (2002) 1854-1859
    • (2002) Genome Res. , vol.12 , pp. 1854-1859
    • Betrán, E.1    Thornton, K.2    Long, M.3
  • 6
    • 44849120756 scopus 로고    scopus 로고
    • Evolutionary origin of regulatory regions of retrogenes in Drosophila
    • Bai Y., Casola C., and Betrán E. Evolutionary origin of regulatory regions of retrogenes in Drosophila. BMC Genomics 9 (2008) 241
    • (2008) BMC Genomics , vol.9 , pp. 241
    • Bai, Y.1    Casola, C.2    Betrán, E.3
  • 7
    • 1642475221 scopus 로고    scopus 로고
    • Extensive gene traffic on the mammalian X chromosome
    • Emerson J.J., Kaessmann H., Betran E., and Long M. Extensive gene traffic on the mammalian X chromosome. Science 303 (2004) 537-540
    • (2004) Science , vol.303 , pp. 537-540
    • Emerson, J.J.1    Kaessmann, H.2    Betran, E.3    Long, M.4
  • 8
    • 37349093019 scopus 로고    scopus 로고
    • Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin
    • Fontanillas P., Hartl D.L., and Reuter M. Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin. PLOS Genet. 3 (2007) 2256-2267
    • (2007) PLOS Genet. , vol.3 , pp. 2256-2267
    • Fontanillas, P.1    Hartl, D.L.2    Reuter, M.3
  • 9
    • 0037201434 scopus 로고    scopus 로고
    • The DPE, a core promoter element for transcription by RNA polymerase II
    • Kadonaga J.T. The DPE, a core promoter element for transcription by RNA polymerase II. Exp. Mol. Med. 34 (2002) 259-264
    • (2002) Exp. Mol. Med. , vol.34 , pp. 259-264
    • Kadonaga, J.T.1
  • 10
    • 0012253746 scopus 로고    scopus 로고
    • Computational analysis of core promoters in the Drosophila genome
    • RESEARCH0087
    • Ohler U., Liao G.C., Niemann H., and Rubin G.M. Computational analysis of core promoters in the Drosophila genome. Genome Biol. 3 (2002) RESEARCH0087
    • (2002) Genome Biol. , vol.3
    • Ohler, U.1    Liao, G.C.2    Niemann, H.3    Rubin, G.M.4
  • 13
    • 0035224747 scopus 로고    scopus 로고
    • Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition
    • Ohler U., Niemann H., Liao G.-c., and Rubin G.M. Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition. Bioinformatics 17 (2001) S199-S206
    • (2001) Bioinformatics , vol.17
    • Ohler, U.1    Niemann, H.2    Liao, G.-c.3    Rubin, G.M.4
  • 14
    • 0024387026 scopus 로고
    • A 14 bp promoter element directs the testis specificity of the Drosophila beta 2 tubulin gene
    • Michiels F., Gasch A., Kaltschmidt B., and Renkawitz-Pohl R. A 14 bp promoter element directs the testis specificity of the Drosophila beta 2 tubulin gene. Embo. J. 8 (1989) 1559-1565
    • (1989) Embo. J. , vol.8 , pp. 1559-1565
    • Michiels, F.1    Gasch, A.2    Kaltschmidt, B.3    Renkawitz-Pohl, R.4
  • 15
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz G.Z., and Stormo G.D. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics 15 (1999) 563-577
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 16
    • 0037191755 scopus 로고    scopus 로고
    • TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila
    • Hochheimer A., Zhou S., Zheng S., Holmes M.C., and Tjian R. TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila. Nature 420 (2002) 439-445
    • (2002) Nature , vol.420 , pp. 439-445
    • Hochheimer, A.1    Zhou, S.2    Zheng, S.3    Holmes, M.C.4    Tjian, R.5
  • 17
    • 3042784063 scopus 로고    scopus 로고
    • The MTE, a new core promoter element for transcription by RNA polymerase II
    • Lim C.Y., Santoso B., Boulay T., Dong E., Ohler U., and Kadonaga J.T. The MTE, a new core promoter element for transcription by RNA polymerase II. Genes Dev. 18 (2004) 1606-1617
    • (2004) Genes Dev. , vol.18 , pp. 1606-1617
    • Lim, C.Y.1    Santoso, B.2    Boulay, T.3    Dong, E.4    Ohler, U.5    Kadonaga, J.T.6
  • 19
    • 0000133199 scopus 로고
    • Identifying protein-binding sites from unaligned DNA fragments
    • Stormo G.D., and Hartzell III G.W. Identifying protein-binding sites from unaligned DNA fragments. Proc. Natl. Acad. Sci. U. S. A. 86 (1989) 1183-1187
    • (1989) Proc. Natl. Acad. Sci. U. S. A. , vol.86 , pp. 1183-1187
    • Stormo, G.D.1    Hartzell III, G.W.2
  • 20
    • 34249804498 scopus 로고    scopus 로고
    • Using FlyAtlas to identify better Drosophila melanogaster models of human disease
    • Chintapalli V.R., Wang J., and Dow J.A. Using FlyAtlas to identify better Drosophila melanogaster models of human disease. Nat. Genet. 39 (2007) 715-720
    • (2007) Nat. Genet. , vol.39 , pp. 715-720
    • Chintapalli, V.R.1    Wang, J.2    Dow, J.A.3
  • 22
    • 33846510838 scopus 로고    scopus 로고
    • Large-scale discovery of promoter motifs in Drosophila melanogaster
    • Down T.A., Bergman C.M., Su J., and Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS Comput. Biol. 3 (2007) e7
    • (2007) PLoS Comput. Biol. , vol.3
    • Down, T.A.1    Bergman, C.M.2    Su, J.3    Hubbard, T.J.4
  • 23
    • 17444402501 scopus 로고    scopus 로고
    • Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster
    • Bergman C.M., Carlson J.W., and Celniker S.E. Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinformatics 21 (2005) 1747-1749
    • (2005) Bioinformatics , vol.21 , pp. 1747-1749
    • Bergman, C.M.1    Carlson, J.W.2    Celniker, S.E.3
  • 24
    • 0041589546 scopus 로고    scopus 로고
    • FootPrinter: a program designed for phylogenetic footprinting
    • Blanchette M., and Tompa M. FootPrinter: a program designed for phylogenetic footprinting. Nucleic Acids Res. 31 (2003) 3840-3842
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3840-3842
    • Blanchette, M.1    Tompa, M.2
  • 25
    • 0023032871 scopus 로고
    • A molecular gradient in early Drosophila embryos and its role in specifying the body pattern
    • Macdonald P.M., and Struhl G. A molecular gradient in early Drosophila embryos and its role in specifying the body pattern. Nature 324 (1986) 537-545
    • (1986) Nature , vol.324 , pp. 537-545
    • Macdonald, P.M.1    Struhl, G.2
  • 27
    • 0023650412 scopus 로고
    • Maternal regulation of zerknullt: a homoeobox gene controlling differentiation of dorsal tissues in Drosophila
    • Rushlow C., Frasch M., Doyle H., and Levine M. Maternal regulation of zerknullt: a homoeobox gene controlling differentiation of dorsal tissues in Drosophila. Nature 330 (1987) 583-586
    • (1987) Nature , vol.330 , pp. 583-586
    • Rushlow, C.1    Frasch, M.2    Doyle, H.3    Levine, M.4
  • 28
    • 0030040858 scopus 로고    scopus 로고
    • Isolation and characterization of cDNA for DREF, a promoter-activating factor for Drosophila DNA replication-related genes
    • Hirose F., Yamaguchi M., Kuroda K., Omori A., Hachiya T., Ikeda M., Nishimoto Y., and Matsukage A. Isolation and characterization of cDNA for DREF, a promoter-activating factor for Drosophila DNA replication-related genes. J. Biol. Chem. 271 (1996) 3930-3937
    • (1996) J. Biol. Chem. , vol.271 , pp. 3930-3937
    • Hirose, F.1    Yamaguchi, M.2    Kuroda, K.3    Omori, A.4    Hachiya, T.5    Ikeda, M.6    Nishimoto, Y.7    Matsukage, A.8
  • 29
    • 0033582646 scopus 로고    scopus 로고
    • Transducing the Dpp morphogen gradient in the wing of Drosophila: regulation of Dpp targets by brinker
    • Campbell G., and Tomlinson A. Transducing the Dpp morphogen gradient in the wing of Drosophila: regulation of Dpp targets by brinker. Cell 96 (1999) 553-562
    • (1999) Cell , vol.96 , pp. 553-562
    • Campbell, G.1    Tomlinson, A.2
  • 30
    • 0015253206 scopus 로고
    • The role of X-chromosome inactivation during spermatogenesis
    • Lifschytz E., and Lindsley D.L. The role of X-chromosome inactivation during spermatogenesis. Proc. Natl. Acad. Sci. U. S. A. 69 (1972) 182-186
    • (1972) Proc. Natl. Acad. Sci. U. S. A. , vol.69 , pp. 182-186
    • Lifschytz, E.1    Lindsley, D.L.2
  • 31
    • 35648982966 scopus 로고    scopus 로고
    • X chromosome inactivation during Drosophila spermatogenesis
    • Hense W., Baines J.F., and Parsch J. X chromosome inactivation during Drosophila spermatogenesis. PLoS Biol. 5 (2007) e273
    • (2007) PLoS Biol. , vol.5
    • Hense, W.1    Baines, J.F.2    Parsch, J.3
  • 32
    • 36049039511 scopus 로고    scopus 로고
    • Demasculinization of X chromosomes in the Drosophila genus
    • Sturgill D., Zhang Y., Parisi M., and Oliver B. Demasculinization of X chromosomes in the Drosophila genus. Nature 450 (2007) 238-241
    • (2007) Nature , vol.450 , pp. 238-241
    • Sturgill, D.1    Zhang, Y.2    Parisi, M.3    Oliver, B.4
  • 34
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32 (2004) 1792-1797
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 36
    • 0025008168 scopus 로고
    • A new way to display consensus sequences
    • Schneider T.D., and Stephens R.M. A new way to display consensus sequences. Nucleic Acids Res. 18 (1990) 6097-6100
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.