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Volumn 5251 LNBI, Issue , 2008, Pages 38-49

Read mapping algorithms for single molecule sequencing data

Author keywords

[No Author keywords available]

Indexed keywords

ALIGNMENT ALGORITHMS; CANDIDATE LOCATIONS; ERROR RATES; FAST IMPLEMENTATIONS; FILTERING METHODS; MAPPING ALGORITHMS; MATCHING PROCESSES; OPTIMAL ALIGNMENTS; SEQUENCE GRAPHS; SINGLE MOLECULE SEQUENCING; SPACED SEEDS;

EID: 56649121826     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-87361-7_4     Document Type: Conference Paper
Times cited : (4)

References (13)
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    • Striped Smith-Waterman speeds database searches six times over other SIMD implementations
    • Farrar, M.: Striped Smith-Waterman speeds database searches six times over other SIMD implementations. Bioinformatics 23(2), 156-161 (2007)
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    • Farrar, M.1
  • 6
    • 0024766957 scopus 로고
    • A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phylogeny is given
    • Hein, J.: A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phylogeny is given. Molecular Biology and Evolution 6(6), 649-668 (1989)
    • (1989) Molecular Biology and Evolution , vol.6 , Issue.6 , pp. 649-668
    • Hein, J.1
  • 7
    • 0028679401 scopus 로고
    • On near-optimal alignments of biological sequences
    • Naor, D., Brutlag, D.L.: On near-optimal alignments of biological sequences. Journal of Computational Biology 1(4), 349-366 (1994)
    • (1994) Journal of Computational Biology , vol.1 , Issue.4 , pp. 349-366
    • Naor, D.1    Brutlag, D.L.2
  • 9
    • 33646000287 scopus 로고    scopus 로고
    • Efficient q-gram filters for finding all epsilon-matches over a given length
    • Rasmussen, K.R., Stoye, J., Myers, E.W.: Efficient q-gram filters for finding all epsilon-matches over a given length. Journal of Computational Biology 13(2), 296-308 (2006)
    • (2006) Journal of Computational Biology , vol.13 , Issue.2 , pp. 296-308
    • Rasmussen, K.R.1    Stoye, J.2    Myers, E.W.3
  • 10
    • 0033743209 scopus 로고    scopus 로고
    • Six-fold speed-up of smith-waterman sequence database searches using parallel processing on common microprocessors
    • Rognes, T., Seeberg, E.: Six-fold speed-up of smith-waterman sequence database searches using parallel processing on common microprocessors. Bioinformatics 16(8), 699-706 (2000)
    • (2000) Bioinformatics , vol.16 , Issue.8 , pp. 699-706
    • Rognes, T.1    Seeberg, E.2
  • 11
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    • Weighted sequence graphs: Boosting iterated dynamic programming using locally suboptimal solutions
    • Schwikowski, B., Vingron, M.: Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. Discrete Appl. Math. 127(1), 95-117 (2003)
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  • 12
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  • 13
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.