iTRAQ analysis of Singapore grouper iridovirus infection in a grouper embryonic cell line

Journal of General Virology

Volumn 89, Issue 11, 2008, Pages 2869-2876

  Chen, Li Ming ^a   Tran, Bich Ngoc ^a   Lin, Qingsong ^a   Lim, Teck Kwang ^a   Wang, Fan ^a   Hew, Choy Leong ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTOR PROTEIN; ALPHA 2 MACROGLOBULIN; GENE PRODUCT; HEAD TAIL ADAPTOR PROTEIN; HISTONE H3; MATRIX PROTEIN; MEMBRANE PROTEIN; MUCIN ASSOCIATED SURFACE PROTEIN; PROCOLLAGENASE; PROTEIN ORF049L; PROTEIN ORF099R; PROTEIN ORF107R; PROTEIN ORF111R; PROTEIN ORF118R; PROTEIN ORF127R; PROTEIN ORF135L; PROTEIN ORF136R; PROTEIN ORF140R; PROTEIN ORF155R; PROTEIN ORF162L; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; SIGNAL PEPTIDE; TRANSPOSASE; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; DOWN REGULATION; GENE EXPRESSION; HOST CELL; IRIDOVIRUS; ISOBARIC TAGS FOR RELATIVE AND ABSOLUTE QUANTIFICATION; ISOTOPE LABELING; LIQUID CHROMATOGRAPHY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; METHYLATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; TANDEM MASS SPECTROMETRY; UPREGULATION; VIRUS CELL INTERACTION; VIRUS INFECTION;

AMINO ACID SEQUENCE; ANIMALS; CELL LINE; FISH DISEASES; GENES, IMMEDIATE-EARLY; GENES, VIRAL; IRIDOVIRUS; ISOTOPE LABELING; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PERCIFORMES; POLYUBIQUITIN; SINGAPORE; VIRAL PROTEINS; VIRUS DISEASES;

EPINEPHELINAE; SINGAPORE GROUPER IRIDOVIRUS;

EID: 56349156637     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.2008/003681-0     Document Type: Article

References (35)

1. Caron, E. & Hall, A. (1998). Identification of two distinct mechanisms of phagocytosis controlled by different Rho GTPases. Science 282, 1717-1721.
2. Cerutti, M. & Devauchelle, G. (1980). Inhibition of macromolecular synthesis in cells infected with an invertebrate virus (iridovirus type 6 or CIV). Arch Virol 63, 297-303.
3. Chen, L. M., Wang, F., Song, W. J. & Hew, C. L. (2006). Temporal and differential gene expression of Singapore grouper iridovirus. J Gen Virol 87, 2907-2915.
4. Chew, L. M., Ngoh, G. H., Ng, M. K., Lee, J. M., Chew, P., Li, J, Chan, Y. C. & Howe, J. L. C. (1994). Grouper cell line for propagating grouper viruses. Singap J Prim Ind 22, 113-116.
5. Chinchar, V. G. & Yu, W. (1992). Metabolism of host and viral mRNAs in frog virus 3-infected cells. Virology 186, 435-443.
6. Chinchar, V. G., Essbauer, S., He, J. G., Hyatt, A., Miyazaki, T., Seligy, V. & Williams, T. (2005). Family Iridoviridae. In Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses, pp. 150-162. Edited by C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger & L. A. Ball. San Diego: Elsevier/ Academic Press.
7. Chua, F. H. C., Ng, M. L., Ng, K L., Loo, J. J. & Wee, J. Y. (1994). Investigation of outbreaks of a novel disease, 'sleepy grouper disease,' the brown-spotted grouper, Epinephelus tauvina Forskal. J Fish Dis 17, 417-427.
8. Finley, D., Bartel, B. & Varshavsky, A. (1989). The tails of ubiquitin precursors are ribosomal proteins whose fusion to ubiquitin facilitates ribosome biogenesis. Nature 338, 394-401.
9. Huyen, Y., Zgheib, O., Ditullio, R. A. J., Gorgoulis, V. G., Zacharatos, P., Petty, T. J., Sheston, E. A., Mellert, H. S., Stavridi, E. S. & Halazonetis, T. D. (2004). Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks. Nature 432, 406-411.
10. Jennings, E. (1995). Folic acid as a cancer preventing agent. Med Hypotheses 45, 297-303.
11. Kozak, M. (1486). Regulation of protein synthesis in virus-infected cells. Adv Virus Res 31, 229-292.
12. Lazar, G. A., Johnson, E. C., Desjarlais, J. R. & Handel, T. M. (1999). Rotamer strain as a determinant of protein structural specificity. Protein Sci 8, 2598-2610.
13. Leyva, J. A., Bianchet, M. A. & Amzel, L. M. (2003). Understanding ATP synthesis: structure and mechanism of the F1-ATPase. Mol Membr Biol 20, 27-33.
14. Li, Z., Lin, Q., Chen, J., Wu, J. L., Lim, T. K., Loh, S. S., Tang, X. & Hew, C. L. (2007). Shotgun identification of the structural proteome of shrimp white spot syndrome virus and iTRAQ differentiation of envelope and nucleocapsid subproteomes. Mol Cell Proteomics 6, 1609-1620.
15. Okada, Y., Feng, Q., Lin, Y., Jiang, Q., Li, Y., Coffield, V. M., Su, L., Xu, G. & Zhang, Y. (2005). hDOT1L links histone methylation to leukemogenesis. Cell 121, 167-178.
16. Park, Y., Shin, C. Y., Lee, W. J., Jo, M. J., Ryu, J. R. Chol, E. Y., Kim, J. C. & Ko, K. H. (2001). Immunological characterization of a mucin-asscociated protein from hamster tracheal epithelial cell culture. Hybridoma, 20, 123-129.
17. Peterson, C. L. & Laniel, M. A. (2004). Histones and histone modifications. Curr Biol 14, R546-R551.
18. Pierce, A., Unwin, R. D., Evans, C. A., Griffiths, S., Carney, L., Zhang, L., Jaworska, E., Lee, C. F., Blinco, D. & other authors (2008). Eight-channel iTRAQ enables comparison of the activity of 6 leukaemogenic tyrosine kinases. Mol Cell Proteomics 7, 853-863.
19. Qin, Q., W., Lam, T. J., Sin, Y. M., Shen, H., Chang, S. F., Ngoh, G. H. & Chen, C. L. (2001). Electron microscopic observations of a marine fish iridovirus isolated from brown-spotted grouper, Epinephelus tauvina. J Virol Methods 98, 17-24.
20. Redman, K. L. & Rechsteiner, M. (1989). Identification of the long ubiquitin extension as ribosomal protein S27a. Nature 338, 438-440.
21. Ross, P.L., Huang, Y.N., Marchese, J.N., Williamson, B., Parker, K., Hattan, S., Khainovski, N., Pillai, S., Dey, S. & other authors (2004). Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 3, 1154-1169.
22. Schneider, R. J. & Shenk, T. (1987). Impact of virus infection on host cell protein synthesis. Annu Rev Biochem 56, 317-332.
23. Sheehan, J. K., Kesimer, M. & Pickles, R. (2006). Innate immunity and mucus structure and function. Novartis Found Symp 279, 155-166.
24. Smith, K. M. & Xeros, N. (1954). An unusual virus disease of a dipterous larva. Nature 173, 866-867.
25. Sonenberg, N. (1987). Regulation of translation by poliovirus. Adv Virus Res 33, 175-204.
26. Song, W. J., Qin, Q. W., Qiu, J., Huang, C. H., Wang, F. & Hew, C. L. (2004). Functional genomics analysis of Singapore grouper iridovirus: complete sequence determination and proteomic analysis. J Virol 78, 12576-12590.
27. Song, W., Lin, Q., Joshi, S. B., Lim, T. K. & Hew, C. L. (2006). Proteomic studies of the Singapore grouper iridovirus. Mol Cell Proteomics 5, 256-264.
28. Tachibana, M., Ueda, J., Fukuda, M., Takeda, N., Ohta, T., Iwanari, H., Sakihama, T., Kodama, T., Hamakubo, T. & Shinkai, Y. (2005). Histone methyltransferases G9a and GLP form heteromeric complexes and are both crucial for methylation of euchromatin at H3-K9. Genes Dev 19, 815-826.
29. Tettelin, H, Masignani, V., Cieslewicz, M. J., Donati, C., Medini, D, Ward, N. L., Angiuoli, S. V., Crabtree, J., Jones, A. L. & other authors (2005). Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial 'pan-genome'. Proc Natl Acad Sci U S A 102, 13950-13955.
30. Westwood, M., Aplin, J. D., Collinge, I. A., White, A. & Gibson, J. M. (2001). Alpha 2-Macroglobulin: a new component in the insulin-like growth factor/insulin-like growth factor binding protein-1 axis. J Biol Chem 276, 41668-41674.
31. Wherlock M. & Mellor, H. (2002). The Rho GTPase family: a Racs to Wrchs story. J Cell Sci 115, 239-240.
32. Williams, T. (1996). The iridoviruses. Adv Virus Res 46, 345-412.
33. Williams, T., Barbosa-Solomieu, V. & Chinchar, V. G. (2005). A decade of advances in iridovirus research. Adv Virus Res 65, 173-248.
34. Young, D. W. (1986). The biosynthesis of the vitamins thiamin, riboflavin and folic acid. Nat Prod Rep 3, 395-419.
35. Zieske, L. R. (2006). A perspective on the use of iTRAQ™ reagent technology for protein complex and profiling studies. J Exp Bot 57, 1501-1508.