-
1
-
-
33746377894
-
Protein misfolding, functional amyloid, and human disease
-
Chiti F., and Dobson C.M. Protein misfolding, functional amyloid, and human disease. Annu. Rev. Biochem. 75 (2006) 333-366
-
(2006)
Annu. Rev. Biochem.
, vol.75
, pp. 333-366
-
-
Chiti, F.1
Dobson, C.M.2
-
2
-
-
34248190279
-
A beta oligomers-a decade of discovery
-
Walsh D.M., and Selkoe D.J. A beta oligomers-a decade of discovery. J. Neurochem. 101 (2007) 1172-1184
-
(2007)
J. Neurochem.
, vol.101
, pp. 1172-1184
-
-
Walsh, D.M.1
Selkoe, D.J.2
-
3
-
-
20444440728
-
Structure of the cross-beta spine of amyloid-like fibrils
-
Nelson R., Sawaya M.R., Balbirnie M., Madsen A.O., Riekel C., Grothe R., and Eisenberg D. Structure of the cross-beta spine of amyloid-like fibrils. Nature 435 (2005) 773-778
-
(2005)
Nature
, vol.435
, pp. 773-778
-
-
Nelson, R.1
Sawaya, M.R.2
Balbirnie, M.3
Madsen, A.O.4
Riekel, C.5
Grothe, R.6
Eisenberg, D.7
-
4
-
-
34249290108
-
Atomic structures of amyloid cross-beta spines reveal varied steric zippers
-
Sawaya M.R., Sambashivan S., Nelson R., Ivanova M.I., Sievers S.A., Apostol M.I., Thompson M.J., Balbirnie M., Wiltzius J.J., McFarlane H.T., Madsen A.O., Riekel C., and Eisenberg D. Atomic structures of amyloid cross-beta spines reveal varied steric zippers. Nature 447 (2007) 453-457
-
(2007)
Nature
, vol.447
, pp. 453-457
-
-
Sawaya, M.R.1
Sambashivan, S.2
Nelson, R.3
Ivanova, M.I.4
Sievers, S.A.5
Apostol, M.I.6
Thompson, M.J.7
Balbirnie, M.8
Wiltzius, J.J.9
McFarlane, H.T.10
Madsen, A.O.11
Riekel, C.12
Eisenberg, D.13
-
5
-
-
0037627715
-
The role of side-chain interactions in the early steps of aggregation: molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35
-
Gsponer J., Haberthur U., and Caflisch A. The role of side-chain interactions in the early steps of aggregation: molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35. Proc. Natl. Acad. Sci. USA 100 (2003) 5154-5159
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5154-5159
-
-
Gsponer, J.1
Haberthur, U.2
Caflisch, A.3
-
6
-
-
50349099883
-
Insights into stability and toxicity of amyloid-like oligomers by replica exchange molecular dynamics analyses
-
De Simone A., Esposito L., Pedone C., and Vitagliano L. Insights into stability and toxicity of amyloid-like oligomers by replica exchange molecular dynamics analyses. Biophys. J. 95 (2008) 1965-1973
-
(2008)
Biophys. J.
, vol.95
, pp. 1965-1973
-
-
De Simone, A.1
Esposito, L.2
Pedone, C.3
Vitagliano, L.4
-
7
-
-
44849096158
-
Investigating the mechanism of peptide aggregation: insights from mixed monte carlo-molecular dynamics simulations
-
Meli M., Morra G., and Colombo G. Investigating the mechanism of peptide aggregation: insights from mixed monte carlo-molecular dynamics simulations. Biophys. J. 94 (2008) 4414-4426
-
(2008)
Biophys. J.
, vol.94
, pp. 4414-4426
-
-
Meli, M.1
Morra, G.2
Colombo, G.3
-
8
-
-
43849090507
-
Insights into structure, stability, and toxicity of monomeric and aggregated polyglutamine models from molecular dynamics simulations
-
Esposito L., Paladino A., Pedone C., and Vitagliano L. Insights into structure, stability, and toxicity of monomeric and aggregated polyglutamine models from molecular dynamics simulations. Biophys. J. 94 (2008) 4031-4040
-
(2008)
Biophys. J.
, vol.94
, pp. 4031-4040
-
-
Esposito, L.1
Paladino, A.2
Pedone, C.3
Vitagliano, L.4
-
9
-
-
37549055108
-
Thermodynamics and kinetics of aggregation for the GNNQQNY peptide
-
Strodel B., Whittleston C.S., and Wales D.J. Thermodynamics and kinetics of aggregation for the GNNQQNY peptide. J. Am. Chem. Soc. 129 (2007) 16005-16014
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 16005-16014
-
-
Strodel, B.1
Whittleston, C.S.2
Wales, D.J.3
-
10
-
-
34548627237
-
Molecular dynamics simulations on the oligomer-formation process of the GNNQQNY peptide from yeast prion protein Sup35
-
Zhang Z., Chen H., Bai H., and Lai L. Molecular dynamics simulations on the oligomer-formation process of the GNNQQNY peptide from yeast prion protein Sup35. Biophys. J. 93 (2007) 1484-1492
-
(2007)
Biophys. J.
, vol.93
, pp. 1484-1492
-
-
Zhang, Z.1
Chen, H.2
Bai, H.3
Lai, L.4
-
11
-
-
34247504580
-
Solid-state NMR study of amyloid nanocrystals and fibrils formed by the peptide GNNQQNY from yeast prion protein Sup35p
-
van der Wel P.C., Lewandowski J.R., and Griffin R.G. Solid-state NMR study of amyloid nanocrystals and fibrils formed by the peptide GNNQQNY from yeast prion protein Sup35p. J. Am. Chem. Soc. 129 (2007) 5117-5130
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 5117-5130
-
-
van der Wel, P.C.1
Lewandowski, J.R.2
Griffin, R.G.3
-
12
-
-
33746800825
-
Molecular dynamics analyses of cross-beta-spine steric zipper models: beta-sheet twisting and aggregation
-
Esposito L., Pedone C., and Vitagliano L. Molecular dynamics analyses of cross-beta-spine steric zipper models: beta-sheet twisting and aggregation. Proc. Natl. Acad. Sci. USA 103 (2006) 11533-11538
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 11533-11538
-
-
Esposito, L.1
Pedone, C.2
Vitagliano, L.3
-
13
-
-
33746765060
-
Structural stability and dynamics of an amyloid-forming peptide GNNQQNY from the yeast prion sup-35
-
Zheng J., Ma B., Tsai C.J., and Nussinov R. Structural stability and dynamics of an amyloid-forming peptide GNNQQNY from the yeast prion sup-35. Biophys. J. 91 (2006) 824-833
-
(2006)
Biophys. J.
, vol.91
, pp. 824-833
-
-
Zheng, J.1
Ma, B.2
Tsai, C.J.3
Nussinov, R.4
-
14
-
-
19444380574
-
Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing
-
Lipfert J., Franklin J., Wu F., and Doniach S. Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing. J. Mol. Biol. 349 (2005) 648-658
-
(2005)
J. Mol. Biol.
, vol.349
, pp. 648-658
-
-
Lipfert, J.1
Franklin, J.2
Wu, F.3
Doniach, S.4
-
15
-
-
0038690113
-
Cross-beta order and diversity in nanocrystals of an amyloid-forming peptide
-
Diaz-Avalos R., Long C., Fontano E., Balbirnie M., Grothe R., Eisenberg D., and Caspar D.L. Cross-beta order and diversity in nanocrystals of an amyloid-forming peptide. J. Mol. Biol. 330 (2003) 1165-1175
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 1165-1175
-
-
Diaz-Avalos, R.1
Long, C.2
Fontano, E.3
Balbirnie, M.4
Grothe, R.5
Eisenberg, D.6
Caspar, D.L.7
-
16
-
-
10844230140
-
Replica exchange molecular dynamics simulations of amyloid peptide aggregation
-
Cecchini M., Rao F., Seeber M., and Caflisch A. Replica exchange molecular dynamics simulations of amyloid peptide aggregation. J. Chem. Phys. 121 (2004) 10748-10756
-
(2004)
J. Chem. Phys.
, vol.121
, pp. 10748-10756
-
-
Cecchini, M.1
Rao, F.2
Seeber, M.3
Caflisch, A.4
-
17
-
-
0001616080
-
Replica-exchange molecular dynamics method for protein folding
-
Sugita Y., and Okamoto Y. Replica-exchange molecular dynamics method for protein folding. Chem. Phys. Lett. 314 (1999) 141-151
-
(1999)
Chem. Phys. Lett.
, vol.314
, pp. 141-151
-
-
Sugita, Y.1
Okamoto, Y.2
-
18
-
-
50049100120
-
The structure of a fibril-forming sequence, NNQQNY, in the context of a globular fold
-
Guo Z., and Eisenberg D. The structure of a fibril-forming sequence, NNQQNY, in the context of a globular fold. Protein Sci. 17 (2008) 1617-1623
-
(2008)
Protein Sci.
, vol.17
, pp. 1617-1623
-
-
Guo, Z.1
Eisenberg, D.2
-
19
-
-
46249092554
-
GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess B., Kutzner C., van der Spoel D., and Lindahl E. GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation. J. Chem. Theory Comput. 4 (2008) 435-447
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
van der Spoel, D.3
Lindahl, E.4
-
20
-
-
34548221936
-
Structural and hydration properties of the partially unfolded states of the prion protein
-
De Simone A., Zagari A., and Derreumaux P. Structural and hydration properties of the partially unfolded states of the prion protein. Biophys. J. 93 (2007) 1284-1292
-
(2007)
Biophys. J.
, vol.93
, pp. 1284-1292
-
-
De Simone, A.1
Zagari, A.2
Derreumaux, P.3
-
21
-
-
4544283591
-
In silico assembly of Alzheimer's Abeta16-22 peptide into beta-sheets
-
Santini S., Mousseau N., and Derreumaux P. In silico assembly of Alzheimer's Abeta16-22 peptide into beta-sheets. J. Am. Chem. Soc. 126 (2004) 11509-11516
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 11509-11516
-
-
Santini, S.1
Mousseau, N.2
Derreumaux, P.3
-
22
-
-
38549138415
-
Computational studies of the structure, dynamics and native content of amyloid-like fibrils of ribonuclease A
-
Colombo G., Meli M., and De Simone A. Computational studies of the structure, dynamics and native content of amyloid-like fibrils of ribonuclease A. Proteins 70 (2008) 863-872
-
(2008)
Proteins
, vol.70
, pp. 863-872
-
-
Colombo, G.1
Meli, M.2
De Simone, A.3
-
23
-
-
50549095455
-
Implicit solvent models and the energy landscape for aggregation of the amyloidogenic KFFE peptide
-
Strodel B., and Wales D.J. Implicit solvent models and the energy landscape for aggregation of the amyloidogenic KFFE peptide. J. Chem. Theor. Comput. 4 (2008) 657-672
-
(2008)
J. Chem. Theor. Comput.
, vol.4
, pp. 657-672
-
-
Strodel, B.1
Wales, D.J.2
-
24
-
-
36849084640
-
Evidence of fibril-like beta-sheet structures in a neurotoxic amyloid intermediate of Alzheimer's beta-amyloid
-
Chimon S., Shaibat M.A., Jones C.R., Calero D.C., Aizezi B., and Ishii Y. Evidence of fibril-like beta-sheet structures in a neurotoxic amyloid intermediate of Alzheimer's beta-amyloid. Nat. Struct. Mol. Biol. 14 (2007) 1157-1164
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 1157-1164
-
-
Chimon, S.1
Shaibat, M.A.2
Jones, C.R.3
Calero, D.C.4
Aizezi, B.5
Ishii, Y.6
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