-
3
-
-
0030908095
-
Models of amyloid seeding in Alzheimer's disease and scrapie: Mechanistic truths and physiological consequences of time-dependent solubility of amyloid proteins
-
J.D. Harper, and P.T. Lansbury Models of amyloid seeding in Alzheimer's disease and scrapie: mechanistic truths and physiological consequences of time-dependent solubility of amyloid proteins Annu. Rev. Biochem. 66 1997 385 407
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 385-407
-
-
Harper, J.D.1
Lansbury, P.T.2
-
4
-
-
0031711595
-
Pathologic conformations of prion proteins
-
F.E. Cohen, and S.B. Prusiner Pathologic conformations of prion proteins Annu. Rev. Biochem. 67 1998 793 819
-
(1998)
Annu. Rev. Biochem.
, vol.67
, pp. 793-819
-
-
Cohen, F.E.1
Prusiner, S.B.2
-
6
-
-
19444376621
-
Prions: Health scare and biological challenge
-
A. Aguzzi, F. Montrasio, and P.S. Kaeser Prions: health scare and biological challenge Cell 93 1998 337 348
-
(1998)
Cell
, vol.93
, pp. 337-348
-
-
Aguzzi, A.1
Montrasio, F.2
Kaeser, P.S.3
-
7
-
-
0035956924
-
An amyloid-forming peptide from the yeast prion sup35 reveals a dehydrated β-sheet structure for amyloid
-
M. Balbirnie, R. Grothe, and D.S. Eisenberg An amyloid-forming peptide from the yeast prion sup35 reveals a dehydrated β-sheet structure for amyloid Proc. Natl Acad. Sci. USA 98 2001 2375 2380
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 2375-2380
-
-
Balbirnie, M.1
Grothe, R.2
Eisenberg, D.S.3
-
8
-
-
0038690113
-
Cross-beta order and diversity in nanocrystals of an amyloid-forming peptide
-
R. Diaz-Avalos, C. Long, E. Fontano, M. Balbirnie, R. Grothe, D. Eisenberg, and D.L.D. Caspar Cross-beta order and diversity in nanocrystals of an amyloid-forming peptide J. Mol. Biol. 330 2003 1165 1175
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 1165-1175
-
-
Diaz-Avalos, R.1
Long, C.2
Fontano, E.3
Balbirnie, M.4
Grothe, R.5
Eisenberg, D.6
Caspar, D.L.D.7
-
9
-
-
0028308104
-
[URE3] as an altered URE2 protein: Evidence for a prion analog in saccharomyces cerevisiae
-
R.B. Wickner [URE3] as an altered URE2 protein: evidence for a prion analog in saccharomyces cerevisiae Science 264 1994 566 569
-
(1994)
Science
, vol.264
, pp. 566-569
-
-
Wickner, R.B.1
-
10
-
-
0029780647
-
Support for the prion hypothesis for inheritance of a phenotypic trait in yeast
-
M.M. Patino, J.J. Liu, J.R. Glover, and S. Lindquist Support for the prion hypothesis for inheritance of a phenotypic trait in yeast Science 273 1996 622 626
-
(1996)
Science
, vol.273
, pp. 622-626
-
-
Patino, M.M.1
Liu, J.J.2
Glover, J.R.3
Lindquist, S.4
-
11
-
-
0028351003
-
Polypeptide chain termination in Saccharomyces cerevisiae
-
I. Stansfield, and M.F. Tuite Polypeptide chain termination in Saccharomyces cerevisiae Curr. Genet. 25 1994 385 395
-
(1994)
Curr. Genet.
, vol.25
, pp. 385-395
-
-
Stansfield, I.1
Tuite, M.F.2
-
12
-
-
0029149975
-
X-ray diffraction of scrapie prion rods and PrP peptides
-
J.T. Nguyen, H. Inouye, M.A. Baldwin, R.J. Fletterick, F.E. Cohen, S.B. Prusiner, and D.A. Kirschner X-ray diffraction of scrapie prion rods and PrP peptides J. Mol. Biol. 252 1995 412 422
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 412-422
-
-
Nguyen, J.T.1
Inouye, H.2
Baldwin, M.A.3
Fletterick, R.J.4
Cohen, F.E.5
Prusiner, S.B.6
Kirschner, D.A.7
-
13
-
-
0027332116
-
Conversion of α-helices into β-sheets features in the formation of the scrapie prion proteins
-
K.M. Pan, M. Baldwin, J. Nguyen, M. Gasset, A. Serban, and D. Groth Conversion of α-helices into β-sheets features in the formation of the scrapie prion proteins Proc. Natl Acad. Sci. USA 90 1993 10962 10966
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 10962-10966
-
-
Pan, K.M.1
Baldwin, M.2
Nguyen, J.3
Gasset, M.4
Serban, A.5
Groth, D.6
-
14
-
-
0035827614
-
Folding of prion protein to its native α-helical conformation is under kinetic control
-
I.V. Baskakov, G. Legname, S.B. Prusiner, and F.E. Cohen Folding of prion protein to its native α-helical conformation is under kinetic control J. Biol. Chem. 276 2001 19687 19690
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 19687-19690
-
-
Baskakov, I.V.1
Legname, G.2
Prusiner, S.B.3
Cohen, F.E.4
-
15
-
-
0035823222
-
Protein refolding versus aggregation: Computer simulations on an intermediate-resolution protein model
-
A.V. Smith, and C.K. Hall Protein refolding versus aggregation: computer simulations on an intermediate-resolution protein model J. Mol. Biol. 312 2001 187 202
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 187-202
-
-
Smith, A.V.1
Hall, C.K.2
-
16
-
-
0032573090
-
Folding and aggregation of designed proteins
-
R.A. Broglia, G. Tiana, S. Pasquali, H.E. Roman, and E. Vigezzi Folding and aggregation of designed proteins Proc. Natl Acad. Sci. USA 95 1998 12930 12933
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 12930-12933
-
-
Broglia, R.A.1
Tiana, G.2
Pasquali, S.3
Roman, H.E.4
Vigezzi, E.5
-
17
-
-
0033582587
-
Thermodynamics of model prions and its implications for the problem of prion protein folding
-
P.M. Harrison, H.S. Chan, S.B. Prusiner, and F.E. Cohen Thermodynamics of model prions and its implications for the problem of prion protein folding J. Mol. Biol. 286 1999 593 606
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 593-606
-
-
Harrison, P.M.1
Chan, H.S.2
Prusiner, S.B.3
Cohen, F.E.4
-
18
-
-
0034275017
-
Compactness, aggregation, and prionlike behaviour of protein: A lattice model study
-
G. Giugliarelli, C. Micheletti, J.R. Banavar, and A. Maritan Compactness, aggregation, and prionlike behaviour of protein: a lattice model study J. Chem. Phys. 113 2000 5072 5077
-
(2000)
J. Chem. Phys.
, vol.113
, pp. 5072-5077
-
-
Giugliarelli, G.1
Micheletti, C.2
Banavar, J.R.3
Maritan, A.4
-
19
-
-
0035079856
-
Conformational propagation with prion-like characteristics in a simple model of protein folding
-
P.M. Harrison, H.S. Chan, S.B. Prusiner, and F.E. Cohen Conformational propagation with prion-like characteristics in a simple model of protein folding Protein Sci. 10 2001 819 835
-
(2001)
Protein Sci.
, vol.10
, pp. 819-835
-
-
Harrison, P.M.1
Chan, H.S.2
Prusiner, S.B.3
Cohen, F.E.4
-
20
-
-
0036228167
-
Exploring protein aggregation and self-propagation using lattice models: Phase diagram and kinetics
-
R.I. Dima, and D. Thirumalai Exploring protein aggregation and self-propagation using lattice models: phase diagram and kinetics Protein Sci. 11 2002 1036 1049
-
(2002)
Protein Sci.
, vol.11
, pp. 1036-1049
-
-
Dima, R.I.1
Thirumalai, D.2
-
21
-
-
0037627715
-
The role of side-chain interactions in the early steps of aggregation: Molecular dynamics simulation of an amyloid-forming peptide from yeast prion sup35
-
J. Gsponer, U. Haberthaüur, and A. Caflisch The role of side-chain interactions in the early steps of aggregation: molecular dynamics simulation of an amyloid-forming peptide from yeast prion sup35 Proc. Natl Acad. Sci. USA 100 2003 5154 5159
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 5154-5159
-
-
Gsponer, J.1
Haberthaüur, U.2
Caflisch, A.3
-
23
-
-
36149021145
-
Fluctuations and irreversible processes
-
L. Onsager, and S. Machlup Fluctuations and irreversible processes Phys. Rev. 91 1953 1505 1512
-
(1953)
Phys. Rev.
, vol.91
, pp. 1505-1512
-
-
Onsager, L.1
MacHlup, S.2
-
24
-
-
0035250027
-
Simulation of protein folding by reaction path annealing
-
P. Eastman, N. Gronbech-Jensen, and S. Doniach Simulation of protein folding by reaction path annealing J. Chem. Phys. 114 2001 3812 3841
-
(2001)
J. Chem. Phys.
, vol.114
, pp. 3812-3841
-
-
Eastman, P.1
Gronbech-Jensen, N.2
Doniach, S.3
-
25
-
-
0012021417
-
Calculation of classical trajectories with a very large time step: Formalism and numerical examples
-
R. Olender, and R. Elber Calculation of classical trajectories with a very large time step: formalism and numerical examples J. Chem. Phys. 105 1996 9299 9315
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 9299-9315
-
-
Olender, R.1
Elber, R.2
-
26
-
-
0000224283
-
Charmm: The energy function and its parameterization with an overview of the program
-
A.D. MacKerell Jr, B. Brooks, C.L. Brooks III, L. Nilsson, B. Roux, Y. Won, and M. Karplus Charmm: the energy function and its parameterization with an overview of the program Encyclopedia Comput. Chem. 1 1998 271 277
-
(1998)
Encyclopedia Comput. Chem.
, vol.1
, pp. 271-277
-
-
MacKerell Jr., A.D.1
Brooks, B.2
Brooks III, C.L.3
Nilsson, L.4
Roux, B.5
Won, Y.6
Karplus, M.7
-
27
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
W. Kabsch, and C. Sander Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features Biopolymers 22 1983 2577 2637
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
28
-
-
0003932766
-
-
W.H. Freeman and Company New York
-
T.E. Creighton Proteins 1993 W.H. Freeman and Company New York
-
(1993)
Proteins
-
-
Creighton, T.E.1
-
29
-
-
0035913537
-
Extending the applicability of the nonlinear Poisson-Boltzmann equation: Multiple dieletric constants and multivalent ions
-
W. Rocchia, E. Alexov, and B. Honig Extending the applicability of the nonlinear Poisson-Boltzmann equation: multiple dieletric constants and multivalent ions J. Phys. Chem. B 105 2001 6507 6514
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 6507-6514
-
-
Rocchia, W.1
Alexov, E.2
Honig, B.3
-
30
-
-
0037080244
-
Rapid grid-based construction of the molecular surface for both molecules and geometric objects: Applications to the finite difference Poisson-Boltzmann method
-
W. Rocchia, S. Sridharan, A. Nicholls, E. Alexov, A. Chiabrera, and B. Honig Rapid grid-based construction of the molecular surface for both molecules and geometric objects: applications to the finite difference Poisson-Boltzmann method J. Comput. Chem. 23 2002 128 137
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 128-137
-
-
Rocchia, W.1
Sridharan, S.2
Nicholls, A.3
Alexov, E.4
Chiabrera, A.5
Honig, B.6
-
31
-
-
0034710897
-
A census of glutamine/asparagine-rich regions: Implications for their conserved function and the prediction of novel prions
-
M.D. Michelitsch, and J.S. Weissman A census of glutamine/asparagine-rich regions: implications for their conserved function and the prediction of novel prions Proc. Natl Acad. Sci. USA 97 2000 11910 11915
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 11910-11915
-
-
Michelitsch, M.D.1
Weissman, J.S.2
-
32
-
-
0028283985
-
Glutamine repeats as polar zippers: Theirs possible role in inherited neurodegenerative diseases
-
M.F. Perutz, T. Johnson, M. Suzuki, and J.T. Finch Glutamine repeats as polar zippers: theirs possible role in inherited neurodegenerative diseases Proc. Natl Acad. Sci. USA 91 1994 5355 5358
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 5355-5358
-
-
Perutz, M.F.1
Johnson, T.2
Suzuki, M.3
Finch, J.T.4
-
33
-
-
0029059477
-
Incorporation of glutamine repeats makes protein oligomerize: Implications for neurodegenrative diseases
-
K. Stott, J.M. Blackburn, P.J.G. Butler, and M.F. Perutz Incorporation of glutamine repeats makes protein oligomerize: implications for neurodegenrative diseases Proc. Natl Acad. Sci. USA 92 1995 6509 6513
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 6509-6513
-
-
Stott, K.1
Blackburn, J.M.2
Butler, P.J.G.3
Perutz, M.F.4
-
34
-
-
0037117499
-
Aggregation of proteins with expanded glutamine and alanine repeats of the glutamine-rich and asparagine-rich domains of sup35 and of the amyloid β-peptide of amyloid plaques
-
M.F. Perutz, B.J. Pope, D. Owen, E.E. Wanker, and E. Scherzinger Aggregation of proteins with expanded glutamine and alanine repeats of the glutamine-rich and asparagine-rich domains of sup35 and of the amyloid β-peptide of amyloid plaques Proc. Natl Acad. Sci. USA 99 2002 5596 5600
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 5596-5600
-
-
Perutz, M.F.1
Pope, B.J.2
Owen, D.3
Wanker, E.E.4
Scherzinger, E.5
-
35
-
-
0036135139
-
A possible role for π-stacking in the self-assembly of amyloid fibrils
-
E. Gazit A possible role for π-stacking in the self-assembly of amyloid fibrils FASEB J. 16 2002 77 83
-
(2002)
FASEB J.
, vol.16
, pp. 77-83
-
-
Gazit, E.1
-
37
-
-
0036233931
-
Origins and kinetic consequences of diversity in sup35 yeast prion fibers
-
A.H. DePace, and J.S. Weissman Origins and kinetic consequences of diversity in sup35 yeast prion fibers Nature Struct. Biol. 9 2002 389 396
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 389-396
-
-
Depace, A.H.1
Weissman, J.S.2
-
38
-
-
0003529419
-
-
Oxford University Press Oxford, UK
-
M. Daune Molecular Biophysics 1993 Oxford University Press Oxford, UK
-
(1993)
Molecular Biophysics
-
-
Daune, M.1
-
39
-
-
0037337271
-
16-22 amyloid peptides into antiparallel β sheets
-
16-22 amyloid peptides into antiparallel β sheets Structure 11 2003 295 307
-
(2003)
Structure
, vol.11
, pp. 295-307
-
-
Klimov, D.K.1
Thirumalai, D.2
-
40
-
-
10844230140
-
Replica exchange molecular dynamics simulations of amyloid peptide aggregation
-
M. Cecchini, F. Rao, M. Seeber, and A. Caisch Replica exchange molecular dynamics simulations of amyloid peptide aggregation J. Chem. Phys. 121 2004 10748 10757
-
(2004)
J. Chem. Phys.
, vol.121
, pp. 10748-10757
-
-
Cecchini, M.1
Rao, F.2
Seeber, M.3
Caisch, A.4
-
41
-
-
13144259646
-
Amyloid fibril formation by an SH3 domain
-
J.I. Guijarro, M. Sunde, J.A. Jones, I.D. Campbell, and C.M. Dobson Amyloid fibril formation by an SH3 domain Proc. Natl Acad. Sci. USA 95 1998 4224 4228
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 4224-4228
-
-
Guijarro, J.I.1
Sunde, M.2
Jones, J.A.3
Campbell, I.D.4
Dobson, C.M.5
-
42
-
-
0033616575
-
Designing conditions for in vitro formation of amyloid protofilaments and fibrils
-
F. Chiti, P. Webster, N. Taddei, A. Clark, M. Stefani, G. Ramponi, and C.M. Dobson Designing conditions for in vitro formation of amyloid protofilaments and fibrils Proc. Natl Acad. Sci. USA 96 1999 3590 3594
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 3590-3594
-
-
Chiti, F.1
Webster, P.2
Taddei, N.3
Clark, A.4
Stefani, M.5
Ramponi, G.6
Dobson, C.M.7
-
43
-
-
0034255027
-
A systematic exploration if the influence of the protein stability on amyloid fibril formation in vitro
-
M. Ramirez-Alvarado, J.S. Merkel, and L. Regan A systematic exploration if the influence of the protein stability on amyloid fibril formation in vitro Proc. Natl Acad. Sci. USA 97 2000 8979 8984
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 8979-8984
-
-
Ramirez-Alvarado, M.1
Merkel, J.S.2
Regan, L.3
-
44
-
-
0346734137
-
Myoglobin forms amyloid fibrils by association of unfolded polypeptide segments
-
V. Fändrich, M. Forge, K. Buder, M. Kittler, C.M. Dobson, and S. Diekmann Myoglobin forms amyloid fibrils by association of unfolded polypeptide segments Proc. Natl Acad. Sci. USA 100 2003 15463 15468
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 15463-15468
-
-
Fändrich, V.1
Forge, M.2
Buder, K.3
Kittler, M.4
Dobson, C.M.5
Diekmann, S.6
-
45
-
-
0036845354
-
The behaviour of polyamino acids reveals an inverse side chain effect in amyloid structure formation
-
M. Fändrich, and C.M. Dobson The behaviour of polyamino acids reveals an inverse side chain effect in amyloid structure formation EMBO J. 21 2002 5682 5690
-
(2002)
EMBO J.
, vol.21
, pp. 5682-5690
-
-
Fändrich, M.1
Dobson, C.M.2
-
49
-
-
0028304962
-
Satisfying hydrogen bonding potentials in proteins
-
I.K. McDonald, and J.M. Thornton Satisfying hydrogen bonding potentials in proteins J. Mol. Biol. 238 1994 777 793
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 777-793
-
-
McDonald, I.K.1
Thornton, J.M.2
|