-
1
-
-
0037204547
-
Prediction of intestinal permeability
-
Egan, W. J.; Lauri, G. Prediction of intestinal permeability. Adv. Drug Delivery Rev. 2002, 54 (3), 273-89.
-
(2002)
Adv. Drug Delivery Rev
, vol.54
, Issue.3
, pp. 273-289
-
-
Egan, W.J.1
Lauri, G.2
-
2
-
-
0032112107
-
Prediction of human intestinal absorption of drug compounds from molecular structure
-
Wessel, M. D.; Jurs, P. C.; Tolan, J. W.; Muskal, S. M. Prediction of human intestinal absorption of drug compounds from molecular structure. J. Chem. Inf. Comput. Sci. 1998, 38 (4), 726-35.
-
(1998)
J. Chem. Inf. Comput. Sci
, vol.38
, Issue.4
, pp. 726-735
-
-
Wessel, M.D.1
Jurs, P.C.2
Tolan, J.W.3
Muskal, S.M.4
-
3
-
-
33748545599
-
Recent advances in computational prediction of drug absorption and permeability in drug discovery
-
Hou, T.; Wang, J.; Zhang, W.; Wang, W.; Xu, X. Recent advances in computational prediction of drug absorption and permeability in drug discovery. Curr. Med. Chem. 2006, 13, 2653-2667.
-
(2006)
Curr. Med. Chem
, vol.13
, pp. 2653-2667
-
-
Hou, T.1
Wang, J.2
Zhang, W.3
Wang, W.4
Xu, X.5
-
5
-
-
33846145424
-
Chemical substituent effect on pyridine permeability and mechanistic insight from computational molecular descriptors
-
Chen, I. J.; Taneja, R.; Yin, D.; Seo, P. R.; Young, D.; MacKerell, A. D., Jr.; Polli, J. E. Chemical substituent effect on pyridine permeability and mechanistic insight from computational molecular descriptors. Mol. Pharmaceutics 2006, 3 (6), 745-55.
-
(2006)
Mol. Pharmaceutics
, vol.3
, Issue.6
, pp. 745-755
-
-
Chen, I.J.1
Taneja, R.2
Yin, D.3
Seo, P.R.4
Young, D.5
MacKerell Jr., A.D.6
Polli, J.E.7
-
6
-
-
2942640607
-
Molecular similarity and property similarity
-
Barbosa, F.; Horvath, D. Molecular similarity and property similarity. Curr. Top. Med. Chem. 2004, 4 (6), 589-600.
-
(2004)
Curr. Top. Med. Chem
, vol.4
, Issue.6
, pp. 589-600
-
-
Barbosa, F.1
Horvath, D.2
-
7
-
-
0034256065
-
The in silico world of virtual libraries
-
Leach, A. R.; Hann, M. M. The in silico world of virtual libraries. Drug Discovery Today 2000, 5 (8), 326-336.
-
(2000)
Drug Discovery Today
, vol.5
, Issue.8
, pp. 326-336
-
-
Leach, A.R.1
Hann, M.M.2
-
8
-
-
0035821601
-
Experimental and computational screening models for the prediction of intestinal drug absorption
-
Stenberg, P.; Norinder, U.; Luthman, K.; Artursson, P. Experimental and computational screening models for the prediction of intestinal drug absorption. J. Med. Chem. 2001, 44 (12), 1927-37.
-
(2001)
J. Med. Chem
, vol.44
, Issue.12
, pp. 1927-1937
-
-
Stenberg, P.1
Norinder, U.2
Luthman, K.3
Artursson, P.4
-
9
-
-
33746461831
-
Computational approaches for modeling human intestinal absorption and permeability
-
Subramanian, G.; Kitchen, D. B. Computational approaches for modeling human intestinal absorption and permeability. J. Mol. Model. 2006, 12 (5), 577-89.
-
(2006)
J. Mol. Model
, vol.12
, Issue.5
, pp. 577-589
-
-
Subramanian, G.1
Kitchen, D.B.2
-
10
-
-
0033981358
-
Computational methods for the prediction of 'drug-likeness'
-
Clark, D. E.; Pickett, S. D. Computational methods for the prediction of 'drug-likeness'. DDT 2000, 5 (2), 49-57.
-
(2000)
DDT
, vol.5
, Issue.2
, pp. 49-57
-
-
Clark, D.E.1
Pickett, S.D.2
-
11
-
-
0034002854
-
Virtual screening of intestinal drug permeability
-
Stenberg, P.; Luthman, K.; Artursson, P. Virtual screening of intestinal drug permeability. J. Controlled Release 2000, 65 (1-2), 231-43.
-
(2000)
J. Controlled Release
, vol.65
, Issue.1-2
, pp. 231-243
-
-
Stenberg, P.1
Luthman, K.2
Artursson, P.3
-
12
-
-
0037474535
-
-
Pillai, A. D.; Rathod, P. D.; P, X. F.; Patel, M.; Nivsarkar, M.; Vasu, K. K.; Padh, H.; Sudarsanam, V. Novel drug designing approach for dual inhibitors as anti-inflammatory agents: Implication of pyridine template. Biochem. Biophys. Res. Commun. 2003, 301 (1), 183-6.
-
Pillai, A. D.; Rathod, P. D.; P, X. F.; Patel, M.; Nivsarkar, M.; Vasu, K. K.; Padh, H.; Sudarsanam, V. Novel drug designing approach for dual inhibitors as anti-inflammatory agents: Implication of pyridine template. Biochem. Biophys. Res. Commun. 2003, 301 (1), 183-6.
-
-
-
-
13
-
-
2342452009
-
Novel factor Xa inhibitors based on a benzoic acid scaffold and incorporating a neutral P1 ligand
-
Nazare, M.; Matter, H.; Klingler, O.; Al-Obeidi, F.; Schreuder, H.; Zoller, G.; Czech, J.; Lorenz, M.; Dudda, A.; Peyman, A.; Nestler, H. P.; Urmann, M.; Bauer, A.; Laux, V.; Wehner, V.; Will, D. W. Novel factor Xa inhibitors based on a benzoic acid scaffold and incorporating a neutral P1 ligand. Bioorg. Med. Chem. Lett. 2004, 14 11, 2801-5.
-
(2004)
Bioorg. Med. Chem. Lett
, vol.14
, Issue.11
, pp. 2801-2805
-
-
Nazare, M.1
Matter, H.2
Klingler, O.3
Al-Obeidi, F.4
Schreuder, H.5
Zoller, G.6
Czech, J.7
Lorenz, M.8
Dudda, A.9
Peyman, A.10
Nestler, H.P.11
Urmann, M.12
Bauer, A.13
Laux, V.14
Wehner, V.15
Will, D.W.16
-
14
-
-
0842306246
-
Protein kinases in drug discovery and development
-
Gill, A. Protein kinases in drug discovery and development. Drug Discovery Today 2004, 9 (1), 16-7.
-
(2004)
Drug Discovery Today
, vol.9
, Issue.1
, pp. 16-17
-
-
Gill, A.1
-
15
-
-
0032568397
-
Physicochemical high throughput screening: Parallel artificial membrane permeation assay in the description of passive absorption processes
-
Kansy, M.; Senner, F.; Gubernator, K. Physicochemical high throughput screening: Parallel artificial membrane permeation assay in the description of passive absorption processes. J. Med. Chem. 1998, 41 (7), 1007-10.
-
(1998)
J. Med. Chem
, vol.41
, Issue.7
, pp. 1007-1010
-
-
Kansy, M.1
Senner, F.2
Gubernator, K.3
-
16
-
-
0001347981
-
The structure and electrochemical properties of a polymer-supported lipid biosensor
-
Thompson, M.; Krull, U. J.; Worsfold, P. J. The structure and electrochemical properties of a polymer-supported lipid biosensor. Anal. Chim. Acta 1980, 117, 133-145.
-
(1980)
Anal. Chim. Acta
, vol.117
, pp. 133-145
-
-
Thompson, M.1
Krull, U.J.2
Worsfold, P.J.3
-
17
-
-
84986512474
-
CHARMM: A Program for Macromolecular Energy, Minimization, and Dynamics Calculations
-
Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan, S.; Karplus, M. CHARMM: A Program for Macromolecular Energy, Minimization, and Dynamics Calculations. J. Comput. Chem. 1983, 4, 187-217.
-
(1983)
J. Comput. Chem
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
18
-
-
56049116165
-
-
Shao, Y, Fusti-Molnar, L, Jung, Y, Kussmann, J, Ochsenfeld, C, Brown, S. T, Gilbert, A. T. B, Slipchenko, L. V, Levchenko, S. V, O'Neill, D. P, DiStatio, R. A, Jr, Lochan, R. C, Wang, T, Beran, G. J. O, Besley, N. A, Herbert, J. M, Lin, C. Y, Van Voorhis, T, Chien, S. H, Sodt, A, Steele, R. P, Rassolov, V. A, Maslen, P. E, Korambath, P. P, Adamson, R. D, Austin, B, Baker, J, Byrd, E. F. C, Dachsel, H, Doerksen, R. J, Dreuw, A, Dunietz, B. D, Dutoi, A. D, Furlani, T. R, Gwaltney, S. R, Heyden, A, Hirata, S, Hsu, C.-P, Kedziora, G, Khalliulin, R. Z, Klunzinger, P, Lee, A. M, Lee, M. S, Liang, W, Lotan, I, Nair, N, Peters, B, Proynov, E. I, Pieniazek, P. A, Rhee, Y. M, Ritchie, J, Rosta, E, Sherrill, C. D, Simmonett, A. C, Subotnik, J. E, Woodcock, H. L, III; Zhang, W, Bell, A. T, Chakraborty, A. K, Chipman, D. M, Keil, F. J, Warshel, A, Hehre, W. J, Schaefer, H. F, III; Kong, J, Krylov, A. I, Gill, P. M. W, Head-Gordon
-
Shao, Y.; Fusti-Molnar, L.; Jung, Y.; Kussmann, J.; Ochsenfeld, C.; Brown, S. T.; Gilbert, A. T. B.; Slipchenko, L. V.; Levchenko, S. V.; O'Neill, D. P.; DiStatio, R. A., Jr.; Lochan, R. C.; Wang, T.; Beran, G. J. O.; Besley, N. A.; Herbert, J. M.; Lin, C. Y.; Van Voorhis, T.; Chien, S. H.; Sodt, A.; Steele, R. P.; Rassolov, V. A.; Maslen, P. E.; Korambath, P. P.; Adamson, R. D.; Austin, B.; Baker, J.; Byrd, E. F. C.; Dachsel, H.; Doerksen, R. J.; Dreuw, A.; Dunietz, B. D.; Dutoi, A. D.; Furlani, T. R.; Gwaltney, S. R.; Heyden, A.; Hirata, S.; Hsu, C.-P.; Kedziora, G.; Khalliulin, R. Z.; Klunzinger, P.; Lee, A. M.; Lee, M. S.; Liang, W.; Lotan, I.; Nair, N.; Peters, B.; Proynov, E. I.; Pieniazek, P. A.; Rhee, Y. M.; Ritchie, J.; Rosta, E.; Sherrill, C. D.; Simmonett, A. C.; Subotnik, J. E.; Woodcock, H. L., III; Zhang, W.; Bell, A. T.; Chakraborty, A. K.; Chipman, D. M.; Keil, F. J.; Warshel, A.; Hehre, W. J.; Schaefer, H. F., III; Kong, J.; Krylov, A. I.; Gill, P. M. W.; Head-Gordon, M. Q-CHEM, version 3.1; Q-CHEM, Inc.: Pittsburgh, PA, 2007.
-
-
-
-
19
-
-
56049110145
-
-
Hawkins, G. D, Giesen, D. J, Lynch, G. C, Chambers, C. C, Rossi, I, Storer, J. W, Li, J, Thompson, J. D, Winget, P, Rinaldi, D, Liotard, D. A, Cramer, C. J, Truhlar, D. G. AMSOL, version 6.8; University of Minnesota: Minneapolis, MN
-
Hawkins, G. D.; Giesen, D. J.; Lynch, G. C.; Chambers, C. C.; Rossi, I.; Storer, J. W.; Li, J.; Thompson, J. D.; Winget, P.; Rinaldi, D.; Liotard, D. A.; Cramer, C. J.; Truhlar, D. G. AMSOL, version 6.8; University of Minnesota: Minneapolis, MN.
-
-
-
-
20
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee, B.; Richards, F. M. The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol. 1971, 55 (3), 379-400.
-
(1971)
J. Mol. Biol
, vol.55
, Issue.3
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
21
-
-
0016606973
-
Structural invariants in protein folding
-
Chothia, C. Structural invariants in protein folding. Nature 1975, 254, 304-308.
-
(1975)
Nature
, vol.254
, pp. 304-308
-
-
Chothia, C.1
-
22
-
-
10044239249
-
Halogen bonds in biological molecules
-
Auffinger, P.; Hays, F. A.; Westhof, E.; Ho, P. S. Halogen bonds in biological molecules. Proc. Natl. Acad. Sci. U.S.A. 2004, 101 (48), 16789-94.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, Issue.48
, pp. 16789-16794
-
-
Auffinger, P.1
Hays, F.A.2
Westhof, E.3
Ho, P.S.4
-
23
-
-
4344568670
-
Dominant role of C-Br...N halogen bond in molecular self-organization. Crystallographic and quantum-chemical study of Schiff-base-containing triazoles
-
Berski, S.; Ciunik, Z.; Drabent, K.; Latajka, Z.; Panek, J. Dominant role of C-Br...N halogen bond in molecular self-organization. Crystallographic and quantum-chemical study of Schiff-base-containing triazoles. J. Phys. Chem. B 2004, 108, 12327-32.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 12327-12332
-
-
Berski, S.1
Ciunik, Z.2
Drabent, K.3
Latajka, Z.4
Panek, J.5
-
24
-
-
33847366247
-
Strong and weak hydrogen bonds in the protein-ligand interface
-
Panigrahi, S. K.; Desiraju, G. R. Strong and weak hydrogen bonds in the protein-ligand interface. Proteins: Struct., Funct., Bioinf. 2007, 67 (1), 128-141.
-
(2007)
Proteins: Struct., Funct., Bioinf
, vol.67
, Issue.1
, pp. 128-141
-
-
Panigrahi, S.K.1
Desiraju, G.R.2
-
25
-
-
56049112937
-
-
MOE (Molecular Operating Environment, Version 6.0 Chemical Computing Group 1010 Sherbrooke Street West, Montreal, Canada H3A2R7;
-
MOE (Molecular Operating Environment), Version 6.0 Chemical Computing Group (1010 Sherbrooke Street West, Montreal, Canada H3A2R7; http://www.chemcomp.com).
-
-
-
-
26
-
-
0017347179
-
Use of distribution coefficients in quantitative structure-activity relationships
-
Scherrer, R. A.; Howard, M. Use of distribution coefficients in quantitative structure-activity relationships. J. Med. Chem. 1977, 20 (1), 53-58.
-
(1977)
J. Med. Chem
, vol.20
, Issue.1
, pp. 53-58
-
-
Scherrer, R.A.1
Howard, M.2
-
27
-
-
67149083509
-
-
American Chemical Society: Washington, DC
-
SciFinder Scholar 2007 Database; American Chemical Society: Washington, DC, 2007.
-
(2007)
SciFinder Scholar 2007 Database
-
-
-
28
-
-
21144438166
-
Likeliood of a Model and Information Criteria
-
Akaike, H. Likeliood of a Model and Information Criteria. J. Econom. 1981, 16, 3-14.
-
(1981)
J. Econom
, vol.16
, pp. 3-14
-
-
Akaike, H.1
-
31
-
-
0022476714
-
Permeability of small nonelectrolytes through lipid bilayer membranes
-
Walter, A.; Gutknecht, J. Permeability of small nonelectrolytes through lipid bilayer membranes. J. Membr. Biol. 1986, 90 (3), 207-17.
-
(1986)
J. Membr. Biol
, vol.90
, Issue.3
, pp. 207-217
-
-
Walter, A.1
Gutknecht, J.2
-
32
-
-
0031268384
-
Computer Simulation of a DPPC Phospholipid Bilayer: Structural Changes as a Function of Molecular Surface Area
-
Feller, S. E.; Venable, R. M.; Pastor, R. W. Computer Simulation of a DPPC Phospholipid Bilayer: Structural Changes as a Function of Molecular Surface Area. Langmuir 1997, 13 (24), 6555-6561.
-
(1997)
Langmuir
, vol.13
, Issue.24
, pp. 6555-6561
-
-
Feller, S.E.1
Venable, R.M.2
Pastor, R.W.3
-
33
-
-
84962346066
-
Computation of the influence of chemical substitution on the pKa of pyridine using semiempirical and ab initio methods
-
Chen, I. J.; MacKerell, A. D. Computation of the influence of chemical substitution on the pKa of pyridine using semiempirical and ab initio methods. Theor. Chem. Acc. 2000, 103, 483-494.
-
(2000)
Theor. Chem. Acc
, vol.103
, pp. 483-494
-
-
Chen, I.J.1
MacKerell, A.D.2
-
34
-
-
0031921236
-
Fatty acid transport: Difficult or easy
-
Hamilton, J. A. Fatty acid transport: Difficult or easy. J. Lipid Res. 1998, 39 (3), 467-81.
-
(1998)
J. Lipid Res
, vol.39
, Issue.3
, pp. 467-481
-
-
Hamilton, J.A.1
-
35
-
-
0034995930
-
Continuum solvent model studies of the interactions of an anticonvulsant drug with a lipid bilayer
-
Kessel, A.; Musafia, B.; Ben-Tal, N. Continuum solvent model studies of the interactions of an anticonvulsant drug with a lipid bilayer. Biophys. J. 2001, 80 (6), 2536-45.
-
(2001)
Biophys. J
, vol.80
, Issue.6
, pp. 2536-2545
-
-
Kessel, A.1
Musafia, B.2
Ben-Tal, N.3
-
36
-
-
0344119514
-
Permeation across hydrated DPPC lipid bilayers: Simulation of the titrable amphiphilic drug valproic acid
-
Ulander, J.; Haymet, A. D. Permeation across hydrated DPPC lipid bilayers: Simulation of the titrable amphiphilic drug valproic acid. Biophys. J. 2003, 85 (6), 3475-84.
-
(2003)
Biophys. J
, vol.85
, Issue.6
, pp. 3475-3484
-
-
Ulander, J.1
Haymet, A.D.2
-
37
-
-
0037111965
-
Substituent effects on the electronic structure and pKa of benzoic acid
-
Hollingsworth, C. A.; Seybold, P. G.; Hadad, C. M. Substituent effects on the electronic structure and pKa of benzoic acid. Int. J. Quantum Chem. 2002, 90 (4-5), 1396-1403.
-
(2002)
Int. J. Quantum Chem
, vol.90
, Issue.4-5
, pp. 1396-1403
-
-
Hollingsworth, C.A.1
Seybold, P.G.2
Hadad, C.M.3
|