EST and mitochondrial DNA sequences support a distinct Pacific form of salmon louse, Lepeophtheirus salmonis

Marine Biotechnology

Volumn 10, Issue 6, 2008, Pages 741-749

  Yazawa, Ryosuke ^a   Yasuike, Motoshige ^a   Leong, Jong ^a   Von Schalburg, Kristian R ^a   Cooper, Glenn A ^a   Beetz Sargent, Marianne ^a   Robb, Adrienne ^a   Davidson, William S ^b   Jones, Simon R M ^c   Koop, Ben F ^a  

^a UNIVERSITY OF VICTORIA   (Canada)

^b SIMON FRASER UNIVERSITY   (Canada)

^c PACIFIC BIOLOGICAL STATION   (Canada)

Author keywords

16S rRNA; Cytochrome oxidase subunit I (COI) gene; Expressed sequence tags (ESTs); Lepeophtheirus salmonis; Mitochondrial genome; Salmon lice

Indexed keywords

16S RRNA; CYTOCHROME OXIDASE SUBUNIT I (COI) GENE; EXPRESSED SEQUENCE TAGS (ESTS); LEPEOPHTHEIRUS SALMONIS; MITOCHONDRIAL GENOME; SALMON LICE;

ACIDS; DNA; DNA SEQUENCES; NUCLEIC ACIDS; OPTICAL TOMOGRAPHY; ORGANIC ACIDS; RNA;

GENES;

CYTOCHROME C OXIDASE; MITOCHONDRIAL DNA; RNA 16S;

COEVOLUTION; DIVERGENCE; GENE EXPRESSION; GENETIC VARIATION; GENOME; LOUSE; MIGRATION; MITOCHONDRIAL DNA; PATHOGENICITY; SALMONID;

ANIMAL; ARTICLE; COPEPOD; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; GENE LIBRARY; GENETIC VARIABILITY; GENETICS; MITOCHONDRIAL GENE; MITOCHONDRIAL GENOME; MITOCHONDRION; MOLECULAR EVOLUTION; PACIFIC OCEAN; PHYLOGENY; POPULATION GENETICS;

ANIMALS; COPEPODA; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; EVOLUTION, MOLECULAR; EXPRESSED SEQUENCE TAGS; GENE LIBRARY; GENES, MITOCHONDRIAL; GENETIC VARIATION; GENETICS, POPULATION; GENOME, MITOCHONDRIAL; MITOCHONDRIA; PACIFIC OCEAN; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

ALASKA; ASIA; ATLANTIC OCEAN; BERING STRAIT; CANADA; EURASIA; FAR EAST; JAPAN; NORTH AMERICA; PACIFIC OCEAN; UNITED STATES;

LEPEOPHTHEIRUS SALMONIS; ONCORHYNCHUS; PHTHIRAPTERA; SALMO; SALMONIDAE;

EID: 55949104059     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-008-9112-y     Document Type: Article

References (49)

1. AA Adzhubei AV Vlasova H Hagen-Larsen TA Ruden JK Laerdahl B Hoyheim 2007 Annotated expression sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource BMC Genomics 8 209 223
2. SF Altschul W Gish W Miller EW Myers DJ Lipman 1990 Basic local alignment search tool J Mol Biol 215 403 410
3. A Bairoch B Boeckmann 1992 The SWISS-PROT protein sequence data bank Nucleic Acids Res 20 2019 2022
4. K Boxaspen 2006 A review of the biology and genetics of sea lice ICES J Mar Sci 63 1304 1316
5. IR Bricknell SJ Dalesman B O'Shea CC Pert AJ Luntz 2006 Effect of environmental salinity on sea lice Lepeophtheirus salmonis settlement success Dis Aquat Org 71 201 212
6. MJ Costello 2006 Ecology of sea lice parasitic on farmed and wild fish Trends Parasitol 2210 475 483
7. CW Cunningham NW Blackstone LW Buss 1992 Evolution of king crabs from hermit crab ancestors Nature 355 539 542
8. LHJ Dawson AW Pike DF Houlihan AH McVicar 1997 Comparison of the susceptibility of sea trout (Salmo trutta L.) and Atlantic salmon (Salmo salar L.) to sea lice (Lepeophtheirus salmonis (Krøyer, 1837)) infections ICES J Mar Sci 54 1129 1139
9. RH Devlin 1993 Sequence of sockeye salmon type 1 and 2 growth hormone genes and the relationship of rainbow trout with Atlantic and Pacific salmon Can J Fish Aquat Sci 50 1738 1748
10. B Ewing P Green 1998 Base-calling of automated sequencer traces using phred. II. Error probabilities Genome Res 8 186 194
11. B Ewing L Hillier MC Wendl P Green 1998 Base-calling of automated sequencer traces using phred. I. Accuracy assessment Genome Res 8 175 185
12. MD Fast NW Ross A Mustafa DE Sims SC Johnson GA Conboy DJ Speare G Johnson JF Burka 2002 Susceptibility of rainbow trout Oncorhynchus mykiss, Atlantic salmon Salmo salar and coho salmon Oncorhynchus kisutch to experimental infection with sea lice Lepeophtheirus salmonis Dis Aquat Org 521 57 68
13. MD Fast JF Burka SC Johnson NW Ross 2003 Enzymes released from Lepeophtheirus salmonis in response to mucus from different salmonids J Parasitol 891 7 13
14. MD Fast DM Muise RE Easy NW Ross SC Johnson 2006 The effects of Lepeophtheirus salmonis infections on the stress response and immunological status of Atlantic salmon (Salmo salar) Fish Shellfish Immunol 213 228 241
15. MD Fast SC Johnson TD Eddy D Pinto NW Ross 2007 Lepeophtheirus salmonis secretory/excretory products and their effect on Atlantic salmon immune gene regulation Parasite Immunol 29 179 189
16. J Felsenstein 1989 PHYLIP-Phylogeny Inference Package Version 3.2 Cladistics 5 164 166
17. D Gordon C Abajian P Green 1998 Consed: a graphical tool for sequence finishing Genome Res 8 195 202
18. M Govoroun F Le Gac Y Guiguen 2006 Generation of a large scale repertoire of expressed sequence tags (ESTs) from normalised rainbow trout cDNA libraries BMC Genomics 7 196 203
19. PD Hebert A Cywinska SL Ball JR deWaard 2003 Biological identifications through DNA barcodes Proc Biol Sci 270 313 321
20. DG Higgins PM Sharp 1988 CLUSTAL: a package for performing multiple sequence alignments on a microcomputer Gene 73 237 244
21. X Huang A Madan 1999 CAP3: a DNA sequence assembly program Genome Res 9 868 877
22. SC Johnson LJ Albright 1992 Comparative susceptibility and histopathology of the response of naive Atlantic. Chinook and coho salmon to experimental infection with Lepeophtheirus salmonis Copepoda: Caligidae Dis Aquat Org 14 179 193
23. SC Johnson MD Fast 2004 Interactions between sea lice and their hosts Symp Soc Exp Biol 55 131 159
24. SC Johnson JW Treasurer S Bravo K Nagasawa Z Kabata 2004 A review of the impact of parasitic copepods on marine aquaculture Zool Stud 432 229 243
25. SR Jones 2001 The occurrence and mechanisms of innate immunity against parasites in fish Dev Comp Immunol 258 841 852
26. SR Jones MD Fast SC Johnson DB Groman 2007 Differential rejection of salmon lice by pink and chum salmon: disease consequences and expression of proinflammatory genes Dis Aquat Org 753 229 238
27. P Kastanis E Eliopoulos GN Goulielmos S Tsakas M Loukas 2003 Macroevolutionary relationships of species of Drosophila melanogaster group based on mtDNA sequences Mol Phylogenet Evol 283 518 528
28. N Knowlton LA Weigt LA Solorzano DK Mills E Bermingham 1993 Divergence in proteins, mitochondrial DNA, and reproductive compatibility across the isthmus of Panama Science 260 1629 1632
29. A Kopp JR True 2002 Phylogeny of the Oriental Drosophila melanogaster species group: a multilocus reconstruction Syst Biol 515 786 805
30. L Margolis 1958 The identity of the species of Lepeophtheirus (Copepoda) parasitic on Pacific salmon genus (Oncorhynchus) and Atlantic salmon (Salmo salar) Can J Zool 36 889 892
31. L Marincovich AY Gladenkov 1999 Evidence for an early opening of the Bering Strait Nature 397 149 151
32. SJ McKay RH Devlin MJ Smith 1996 Phylogeny of Pacific salmon and trout based on growth hormone type-2 and mitochondrial NADH dehydrogenase subunit 3 DNA sequences Can J Fish Aquat Sci 53 1165 1176
33. G Perrire M Gouy 1996 WWW-Query: an on-line retrieval system for biological sequence banks Biochimie 78 364 369
34. AW Pike SL Wadsworth 1999 Sealice on salmonids: their biology and control Adv Parasitol 44 233 337
35. CE Rexroad 3rd Y Lee JW Keele S Karamycheva G Brown B Koop SA Gahr Y Palti J Quackenbush 2003 Sequence analysis of a rainbow trout cDNA library and creation of a gene index Cytogenet Genome Res 102 347 354
36. ML Rise KR von Schalburg GD Brown MA Mawer RH Devlin N Kuipers M Busby M Beetz-Sargent R Alberto AR Gibbs P Hunt R Shukin JA Zeznik C Nelson SR Jones DE Smailus SJ Jones JE Schein MA Marra YS Butterfield JM Stott SH Ng WS Davidson BF Koop 2004 Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics Genome Res 143 478 490
37. A Rocha-Olivares JW Fleeger DW Foltz 2001 Decoupling of molecular and morphological evolution in deep lineages of a meiobenthic harpacticoid copepod Mol Biol Evol 186 1088 1102
38. S Saksida GA Karreman J Constantine A Donald 2007 Differences in Lepeophtheirus salmonis abundance levels on Atlantic salmon farms in the Broughton Archipelago, British Columbia, Canada J Fish Dis 306 357 366
39. CD Schubart R Diesel SB Hedges 1998 Rapid evolution to terrestrial life in Jamaican crabs Nature 393 363 365
40. GR Smith 1992 Introgression in fishes: significance for paleontology Syst Biol 411 41 57
41. EL Sonnhammer R Durbin 1995 A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis Gene 167 1 10
42. C Sturmbauer JS Levinton J Christy 1996 Molecular phylogeny analysis of fiddler crabs: test of the hypothesis of increasing behavioral complexity in evolution Proc Natl Acad Sci USA 93 10855 10857
43. K Tjensvoll K Hodneland F Nilsen A Nylund 2005 Genetic characterization of the mitochondrial DNA from Lepeophtheirus salmonis Crustacea; Copepoda. A new gene organization revealed Gene 3532 218 230
44. K Tjensvoll KA Glover A Nylund 2006 Sequence variation in four mitochondrial genes of the salmon louse Lepeophtheirus salmonis Dis Aquat Org 683 251 259
45. CD Todd AM Walker MG Ritchie JA Graves AF Walker 2004 Population genetic differentiation of sea lice (Lepeophtheirus salmonis) parasitic on Atlantic and Pacific salmonids: analyses of microsatellite DNA variation among wild and farmed hosts Can J Fish Aquat Sci 61 1176 1190
46. O Tully DT Nolan 2002 A review of population biology and host-parasite interactions of the sea lice Lepeophtheirus salmonis (Copepoda: Caligidae) Parasitology 124 165 182
47. KR von Schalburg ML Rise GA Cooper GD Brown AR Gibbs CC Nelson WS Davidson BF Koop 2005 Fish and chips: various methodologies demonstrate utility of a 16,006-gene salmonid microarray BMC Genomics 6 126 133
48. GN Wagner MD Fast SC Johnson 2008 Physiology and immunology of Lepeophtheirus salmonis infections of salmonids Trends Parasitol 24 176 183
49. JW Wynne MG O'Sullivan MT Cook G Stone BF Nowak DR Lovell NG Elliott 2008 Transcriptome analyses of amoebic gill disease-affected Atlantic salmon (Salmo salar) tissues reveal localized host gene suppression Mar Biotechnol 10 388 403