-
1
-
-
12544259675
-
Activation of peroxisome proliferator-activated receptor alpha increases the expression and activity of microsomal triglyceride transfer protein in the liver
-
C. Ameen, U. Edvardsson, A. Ljungberg, L. Asp, P. Akerblad, A. Tuneld, S.O. Olofsson, D. Linden and J. Oscarsson, Activation of peroxisome proliferator-activated receptor alpha increases the expression and activity of microsomal triglyceride transfer protein in the liver, J Biol Chem 280(2) (2005), 1224-1229.
-
(2005)
J Biol Chem
, vol.280
, Issue.2
, pp. 1224-1229
-
-
Ameen, C.1
Edvardsson, U.2
Ljungberg, A.3
Asp, L.4
Akerblad, P.5
Tuneld, A.6
Olofsson, S.O.7
Linden, D.8
Oscarsson, J.9
-
2
-
-
0038716277
-
Modeling dependencies in protein-DNA binding sites
-
New York, NY, USA: ASM Press;
-
Y. Barash, G. Elidan, N. Friedman and T. Kaplan, Modeling dependencies in protein-DNA binding sites. In RECOMB '03: Proceedings of the Seventh Annual International Conference on Computational Molecular Biology. New York, NY, USA: ASM Press; 2003, 28-37.
-
(2003)
RECOMB '03: Proceedings of the Seventh Annual International Conference on Computational Molecular Biology
, pp. 28-37
-
-
Barash, Y.1
Elidan, G.2
Friedman, N.3
Kaplan, T.4
-
3
-
-
20744440509
-
Identification of transcription factor binding sites with variable-order Bayesian networks
-
I. Ben-Gal, A. Shani, A. Gohr, J. Grau, S. Arviv, A. Shmilovici, S. Posch and I. Grosse, Identification of transcription factor binding sites with variable-order Bayesian networks, Bioinformatics 21 (11) (2005), 2657-2666.
-
(2005)
Bioinformatics
, vol.21
, Issue.11
, pp. 2657-2666
-
-
Ben-Gal, I.1
Shani, A.2
Gohr, A.3
Grau, J.4
Arviv, S.5
Shmilovici, A.6
Posch, S.7
Grosse, I.8
-
4
-
-
0037109192
-
How good an approximation is it?
-
Additivity in protein-DNA interactions
-
P.V. Benos, M.L. Bulyk and G.D. Stormo, Additivity in protein-DNA interactions: How good an approximation is it? Nucleic Acids Res 30 (2002), 4442-4451.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4442-4451
-
-
Benos, P.V.1
Bulyk, M.L.2
Stormo, G.D.3
-
5
-
-
33846623798
-
Peroxisome proliferator-activated receptors as transcriptional nodal points and therapeutic targets
-
J.D. Brown and J. Plutzky, Peroxisome proliferator-activated receptors as transcriptional nodal points and therapeutic targets, Circulation 115(4) (2007), 518-533.
-
(2007)
Circulation
, vol.115
, Issue.4
, pp. 518-533
-
-
Brown, J.D.1
Plutzky, J.2
-
6
-
-
33645863768
-
Transcriptional regulation of metabolism
-
B. Desvergne, L. Michalik and W. Wahli, Transcriptional regulation of metabolism, Physiol Rev 86(2) (2006), 465-514.
-
(2006)
Physiol Rev
, vol.86
, Issue.2
, pp. 465-514
-
-
Desvergne, B.1
Michalik, L.2
Wahli, W.3
-
7
-
-
84945737762
-
A leisurely look at the bootstrap the jackknife and resampling
-
B. Efron and G. Gong, A leisurely look at the bootstrap the jackknife and resampling, American Statistician 37 (1983), 36-48.
-
(1983)
American Statistician
, vol.37
, pp. 36-48
-
-
Efron, B.1
Gong, G.2
-
8
-
-
17644369311
-
Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites
-
N.I. Gershenzon, G.D. Stormo and I.P. Ioshikhes, Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites, Nucleic Acids Res 33(7) (2005), 2290-2301.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.7
, pp. 2290-2301
-
-
Gershenzon, N.I.1
Stormo, G.D.2
Ioshikhes, I.P.3
-
9
-
-
33747095790
-
Optimized mixed Markov models for motif identification
-
W. Huang, D.M. Umbach, U. Ohler and L. Li, Optimized mixed Markov models for motif identification, BMC Bioinformatics 7 (2006), 279.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 279
-
-
Huang, W.1
Umbach, D.M.2
Ohler, U.3
Li, L.4
-
10
-
-
0037250168
-
The UCSC Genome Browser Database
-
D. Karolchik, R. Baertsch, M. Diekhans, T.S. Furey, A. Hinrichs, Y.T. Lu, K.M. Roskin, M. Schwartz, C.W. Sugnet, D.J. Thomas, R.J.Weber, D. Haussler and W.J. Kent, The UCSC Genome Browser Database, Nucleic Acids Res 31(1) (2003), 51-54.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 51-54
-
-
Karolchik, D.1
Baertsch, R.2
Diekhans, M.3
Furey, T.S.4
Hinrichs, A.5
Lu, Y.T.6
Roskin, K.M.7
Schwartz, M.8
Sugnet, C.W.9
Thomas, D.J.10
Weber, R.J.11
Haussler, D.12
Kent, W.J.13
-
11
-
-
2642546601
-
Rosiglitazone induction of Insig-1 in white adipose tissue reveals a novel interplay of peroxisome proliferator-activated receptor gamma and sterol regulatory element-binding protein in the regulation of adipogenesis
-
H.R. Kast-Woelbern, S.L. Dana, R.M. Cesario, L. Sun, L.Y. de Grandpre, M.E. Brooks, D.L. Osburn, A. Reifel-Miller, K. Klausing and M.D. Leibowitz, Rosiglitazone induction of Insig-1 in white adipose tissue reveals a novel interplay of peroxisome proliferator-activated receptor gamma and sterol regulatory element-binding protein in the regulation of adipogenesis, J Biol Chem 279(23) (2004), 23908-23915.
-
(2004)
J Biol Chem
, vol.279
, Issue.23
, pp. 23908-23915
-
-
Kast-Woelbern, H.R.1
Dana, S.L.2
Cesario, R.M.3
Sun, L.4
de Grandpre, L.Y.5
Brooks, M.E.6
Osburn, D.L.7
Reifel-Miller, A.8
Klausing, K.9
Leibowitz, M.D.10
-
12
-
-
0141974916
-
A non-parametric model for transcription factor binding sites,Nucleic
-
O.D. King and F.P. Roth, A non-parametric model for transcription factor binding sites,Nucleic Acids Res 31(19) (2003), e116.
-
(2003)
Acids Res
, vol.31
, Issue.19
-
-
King, O.D.1
Roth, F.P.2
-
13
-
-
18444387984
-
-
N.A. Kolchanov, E.V. Ignatieva, E.A. Ananko, O.A. Podkolodnaya, I.L. Stepanenko, T.I. Merkulova, M.A. Pozdnyakov, N.L. Podkolodny, A.N. Naumochkin and A.G. Romashchenko, Transcription Regulatory Regions Database, (TRRD): Its status in 2002, Nucleic Acids Res 30 (2002) 312-317.
-
N.A. Kolchanov, E.V. Ignatieva, E.A. Ananko, O.A. Podkolodnaya, I.L. Stepanenko, T.I. Merkulova, M.A. Pozdnyakov, N.L. Podkolodny, A.N. Naumochkin and A.G. Romashchenko, Transcription Regulatory Regions Database, (TRRD): Its status in 2002, Nucleic Acids Res 30 (2002) 312-317.
-
-
-
-
14
-
-
33746080426
-
Genome-wide identification of peroxisome proliferator response elements using integrated computational genomics
-
D.G. Lemay and D.H. Hwang, Genome-wide identification of peroxisome proliferator response elements using integrated computational genomics, J Lipid Res 47 (2006), 1583-1587.
-
(2006)
J Lipid Res
, vol.47
, pp. 1583-1587
-
-
Lemay, D.G.1
Hwang, D.H.2
-
15
-
-
33748369644
-
Method SiteGA for transcription factor binding sites recognition
-
V.G. Levitsky, E.V. Ignatieva, E.A. Ananko, T.I. Merkulova, N.A. Kolchanov and T.C. Hodgman, Method SiteGA for transcription factor binding sites recognition, Biofizika 51(4) (2006), 633-639.
-
(2006)
Biofizika
, vol.51
, Issue.4
, pp. 633-639
-
-
Levitsky, V.G.1
Ignatieva, E.V.2
Ananko, E.A.3
Merkulova, T.I.4
Kolchanov, N.A.5
Hodgman, T.C.6
-
16
-
-
40549106454
-
Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions
-
V.G. Levitsky, E.V. Ignatieva, E.A. Ananko, I.I. Turnaev, T.I. Merkulova, N.A. Kolchanov and T.C. Hodgman, Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions, BMC Bioinformatics 8 (2007), 241.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 241
-
-
Levitsky, V.G.1
Ignatieva, E.V.2
Ananko, E.A.3
Turnaev, I.I.4
Merkulova, T.I.5
Kolchanov, N.A.6
Hodgman, T.C.7
-
17
-
-
9544234490
-
The parameter-less genetic algorithm in practice
-
F.G. Lobo and D.E. Goldberg, The parameter-less genetic algorithm in practice, Information Sciences 167 (2004), 217-232.
-
(2004)
Information Sciences
, vol.167
, pp. 217-232
-
-
Lobo, F.G.1
Goldberg, D.E.2
-
19
-
-
0029066447
-
Novel sequence determinants in peroxisomal proliferator signaling
-
C.N. Palmer, M.H. Hsu, K.J. Griffin and E.F. Johnson, Novel sequence determinants in peroxisomal proliferator signaling, J Biol Chem 270 (1995), 16114-161212.
-
(1995)
J Biol Chem
, vol.270
, pp. 16114-161212
-
-
Palmer, C.N.1
Hsu, M.H.2
Griffin, K.J.3
Johnson, E.F.4
-
20
-
-
25144478445
-
A multiple-feature framework for modelling and predicting transcription factor binding sites
-
R. Pudimat, E.G. Schukat-Talamazzini and R. Backofen, A multiple-feature framework for modelling and predicting transcription factor binding sites, Bioinformatics 21(14) (2005), 3082-3088.
-
(2005)
Bioinformatics
, vol.21
, Issue.14
, pp. 3082-3088
-
-
Pudimat, R.1
Schukat-Talamazzini, E.G.2
Backofen, R.3
-
21
-
-
33644873945
-
Towards complete promoter coverage of selected model organisms
-
EPD in its twentieth year
-
C.D. Schmid, R. Perier, V. Praz and P. Bucher, EPD in its twentieth year: Towards complete promoter coverage of selected model organisms, Nucleic Acids Res 34 (2006), 82-85.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 82-85
-
-
Schmid, C.D.1
Perier, R.2
Praz, V.3
Bucher, P.4
-
22
-
-
10044235262
-
Peroxisome proliferator-activated receptor gamma controls Muc1 transcription in trophoblasts
-
T. Shalom-Barak, J.M. Nicholas, Y. Wang, X. Zhang, E.S. Ong, T.H. Young, S.J. Gendler, R.M. Evans and Y. Barak, Peroxisome proliferator-activated receptor gamma controls Muc1 transcription in trophoblasts, Mol Cell Biol 24(24) (2004), 10661-10669.
-
(2004)
Mol Cell Biol
, vol.24
, Issue.24
, pp. 10661-10669
-
-
Shalom-Barak, T.1
Nicholas, J.M.2
Wang, Y.3
Zhang, X.4
Ong, E.S.5
Young, T.H.6
Gendler, S.J.7
Evans, R.M.8
Barak, Y.9
-
23
-
-
16544395994
-
Effect of peroxisome proliferator-activated receptor alpha on human angiotensinogen promoter
-
Y. Shimamoto, K. Hirota and A. Fukamizu, Effect of peroxisome proliferator-activated receptor alpha on human angiotensinogen promoter, Int J Mol Med 13(5) (2004), 729-733.
-
(2004)
Int J Mol Med
, vol.13
, Issue.5
, pp. 729-733
-
-
Shimamoto, Y.1
Hirota, K.2
Fukamizu, A.3
-
24
-
-
0142120289
-
Functional relationship between MyoD and peroxisome proliferator-activated receptor-dependent regulatory pathways in the control of the human uncoupling protein-3 gene transcription
-
G. Solanes, N. Pedraza, R. Iglesias, M. Giralt and F. Villarroya, Functional relationship between MyoD and peroxisome proliferator-activated receptor-dependent regulatory pathways in the control of the human uncoupling protein-3 gene transcription, Mol Endocrinol 17(10) (2003), 1944-1958.
-
(2003)
Mol Endocrinol
, vol.17
, Issue.10
, pp. 1944-1958
-
-
Solanes, G.1
Pedraza, N.2
Iglesias, R.3
Giralt, M.4
Villarroya, F.5
-
25
-
-
0034072450
-
Representation and discovery
-
DNA binding sites
-
G.D. Stormo, DNA binding sites: Representation and discovery, Bioinformatics 16 (2000), 16-23.
-
(2000)
Bioinformatics
, vol.16
, pp. 16-23
-
-
Stormo, G.D.1
-
26
-
-
4444337443
-
Transcriptional regulation of human CYP27 integrates retinoid, peroxisome proliferator-activated receptor, and liver X receptor signaling in macrophages
-
A. Szanto, S. Benko, I. Szatmari, B.L. Balint, I. Furtos, R. Ruhl, S. Molnar, L. Csiba, R. Garuti, S. Calandra, H. Larsson, U. Diczfalusy and L. Nagy, Transcriptional regulation of human CYP27 integrates retinoid, peroxisome proliferator-activated receptor, and liver X receptor signaling in macrophages, Mol Cell Biol 24(18) (2004), 8154-8166.
-
(2004)
Mol Cell Biol
, vol.24
, Issue.18
, pp. 8154-8166
-
-
Szanto, A.1
Benko, S.2
Szatmari, I.3
Balint, B.L.4
Furtos, I.5
Ruhl, R.6
Molnar, S.7
Csiba, L.8
Garuti, R.9
Calandra, S.10
Larsson, H.11
Diczfalusy, U.12
Nagy, L.13
-
27
-
-
0037062442
-
Kwiatkowski D. Quantitative prediction of NF-kB DNA-protein interactions
-
I.A. Udalova, R. Mott and D. Field, Kwiatkowski D. Quantitative prediction of NF-kB DNA-protein interactions, PNAS 99(12) (2002), 8167-8172.
-
(2002)
PNAS
, vol.99
, Issue.12
, pp. 8167-8172
-
-
Udalova, I.A.1
Mott, R.2
Field, D.3
-
28
-
-
2342445980
-
Modeling within-motif dependence for transcription factor binding site predictions
-
Q. Zhou and J.S. Liu, Modeling within-motif dependence for transcription factor binding site predictions, Bioinformatics 20(6) (2004), 909-916.
-
(2004)
Bioinformatics
, vol.20
, Issue.6
, pp. 909-916
-
-
Zhou, Q.1
Liu, J.S.2
|