Physiology of acetic acid bacteria in light of the genome sequence of Gluconobacter oxydans

Journal of Molecular Microbiology and Biotechnology

Volumn 16, Issue 1-2, 2008, Pages 69-80

  Deppenmeier, Uwe ^a   Ehrenreich, Armin ^b  

^a UNIVERSITY OF BONN   (Germany)

^b UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

Acetic acid bacteria; Biotechnology; Pyrroloquinoline quinone dependent dehydrogenases; Vinegar

Indexed keywords

ACETIC ACID; OXIDOREDUCTASE; SUGAR;

ACETOBACTERACEAE; AMINO TERMINAL SEQUENCE; BIOTECHNOLOGY; CARBON METABOLISM; FERMENTATION; GENE SEQUENCE; GLUCONOBACTER OXYDANS; MEMBRANE BINDING; NONHUMAN; OXIDATION; REVIEW; STEREOCHEMISTRY; TAXONOMY;

ACETIC ACID; ACETOBACTERACEAE; GENE EXPRESSION REGULATION, BACTERIAL; GENOME, BACTERIAL; GLUCONOBACTER OXYDANS; OXIDATION-REDUCTION;

ACETOBACTERACEAE; BACTERIA (MICROORGANISMS); GLUCONOBACTER OXYDANS;

EID: 55249126454     PISSN: 14641801     EISSN: None     Source Type: Journal    
DOI: 10.1159/000142895     Document Type: Review

References (77)

1. Adachi O, Fujii Y, Ghaly MF, Toyama H, Shinagawa E, Matsushita K: Membrane-bound quinoprotein D-arabitol dehydrogenase of Gluconobacter suboxydans IFO 3257: a versatile enzyme for the oxidative fermentation of various ketoses. Biosci Biotechnol Biochem 2001a; 65:2755-2762.
2. Adachi O, Fujii Y, Ano Y, Moonmangmee D, Toyama H, Shinagawa E, Theeragool G, Lotong N, Matsushita K: Membrane-bound sugar alcohol dehydrogenase in acetic acid bacteria catalyzes L-ribulose formation and NAD-dependent ribitol dehydrogenase is independent of the oxidative fermentation. Biosci Biotechnol Biochem 2001b;65:115-125.
3. Adachi O, Moonmangmee D, Shinagawa E, Toyama H, Yamada M, Matsushita K: New quinoproteins in oxidative fermentation. Biochim Biopyhs Acta 2003;164:10-17.
4. Asai T: Acetic Acid Bacteria: Classification and Biochemical Activities. Tokyo, University of Tokyo Press, 1968
5. Bizouarn T, Althage M, Pedersen A, Tigerstrom A, Karlsson J, Johansson C, Rydstrom J: The organization of the membrane domain and its interaction with the NADP(H)-binding site in proton-translocating transhydrogenase from E. coli. Biochim Biophys Acta 2002;1555:122-127.
6. Bremus C, Herrmann U, Bringer-Meyer S, Sahm H: The use of microorganisms in L-ascorbic acid production. J Biotechnol 2006;124:196-205.
7. Buckley PA, Baz Jackson J, Schneider T, White SA, Rice DW, Baker PJ: Protein-protein recognition, hydride transfer and proton pumping in the transhydrogenase complex. Structure 2000;8:809-815.
8. Chan HT, Anthony C: The o-type oxidase of the acidophilic methylotroph Acetobacter methanolicus. J Gen Microbiol 1991;137:693-704.
9. Chandra Raj K, Ingram LO, Maupin-Furlow JA: Pyruvate decarboxylase: a key enzyme for the oxidative metabolism of lactic acid by Acetobacter pasteurianus. Arch Microbiol 2001;176:443-451.
10. Chen C, Liu BY: Changes in major components of tea fungus metabolites during prolonged fermentation. J Appl Microbiol 2000;89: 834-839.
11. Chinnawirotpisan P, Matsushita K, Toyama H, Adachi O, Limtong S, Theeragool G: Quinoprotein alcohol dehydrogenase is involved in catabolic acetate production, while NAD-dependent alcohol dehydrogenase in ethanol assimilation in Acetobacter pasteurianus SKU1108. J Biosci Bioeng 2003;96:564-571.
12. Clarke DM, Loo TW, Gillam S, Bragg PD: Nucleotide sequence of the pntA and pntB genes encoding the pyridine nucleotide transhydrogenase of Escherichia coli. Eur J Biochem 1986;158:647-653.
13. Cotton NPJ, White SA, Peake SJ, McSweeney S, Baz Jackson J: The crystal structure of an asymmetric complex of the two nucleotide binding components of proton-translocating transhydrogenase. Structure 2001;9:165-176.
14. Czaja W, Krystynowicz A, Bielecki S, Brown RM Jr: Microbial cellulose - the natural power to heal wounds. Biomaterials 2006;27:145-151.
15. De Ley J: Comparative carbohydrate metabolism and a proposal for a phylogenetic relationship of the acetic acid bacteria. J Gen Microbiol 1963;24:31-50.
16. De Ley J, Swings J: Genus I. Acetobacter; in Krieg NR, Holt JG (eds): Bergey's Manual of Systematic Bacteriology. Baltimore, Williams & Wilkins, 1984, vol 1, pp 268-274.
17. De Ley J, Swings J, Gossele F: The genus Gluconobacter; in Krieg NR, Holt JG (eds): Bergey's Manual of Systematic Bacteriology. Baltimore, Williams & Wilkins, 1984, vol 1, pp 267-278.
18. Delmer DP, Amor Y: Cellulose biosynthesis. Plant Cell 1995;7:987-1000.
19. Deppenmeier U, Hoffmeister M, Prust C: Biochemistry and biotechnological applications of Gluconobacter strains. Appl Microbiol Biotechnol 2002;59:1513-1533.
20. Drysdale GS, Fleet GH: Acetic acid bacteria in winemaking: a review. Am J Enol Vitic 1988; 39:143-154.
21. Dueweke TJ, Gennis RB: Proteolysis of the cytochrome d complex with trypsin and chymotrypsin localizes a quinol oxidase domain. Biochemistry 1991;30:3401-3406.
22. Elfari M, Ha SW, Bremus C, Merfort M, Khodaverdi V, Herrmann U, Sahm H, Görisch H: A Gluconobacter oxydans mutant converting glucose almost quantitatively to 5-keto-D-gluconic acid. Appl Microbiol Biotechnol 2005;66:668-674.
23. Euzéby J: Validation of publication of new names and new combinations previously effectively published outside the IJSEM. Int J Syst Evol Microbiol 2005;55:983-985.
24. Felder M, Gupta A, Verma V, Kumar A, Qazi GN, Cullum J: The pyrroloquinoline quinone synthesis genes of Gluconobacter oxydans. FEMS Microbiol Lett 2000;193:231-236.
25. Franke IH, Fegan M, Hayward C, Leonard G, Stackebrandt E, Sly LI: Description of Gluconacetobacter sacchari sp. nov., a new species of acetic acid bacterium isolated from the leaf sheath of sugar cane and from the pink sugar-cane mealy bug. Int J Syst Bacteriol 1999;49:1681-1693.
26. Greenberg DE, Porcella SF, Stock F, Wong A, Conville PS, Murray PR, Holland SM, Zelazny AM: Granulibacter bethesdensis gen. nov., sp. nov., a distinctive pathogenic acetic acid bacterium in the family Acetobacteraceae. Int J Syst Evol Microbiol 2006;56:2609-2616.
27. Greenfield S, Claus GW: Nonfunctional tricarboxylic acid cycle and the mechanism of glutamate biosynthesis in Acetobacter suboxydans. J Bacteriol 1972;112:1295-1301.
28. Gupta A, Singh VK, Qazi GN, Kumar A: Gluconobacter oxydans: its biotechnological applications. J Mol Microbiol Biotechnol 2001;3:445-456.
29. Hauge JG, King TE, Cheldelin VH: Oxidation of dihydroxyacetone via the pentose cycle in Acetobacter suboxydans. J Biol Chem 1955;214:11-26.
30. Hekmat D, Bauer R, Fricke J: Optimization of the microbial synthesis of dihydroxyacetone from glycerol with Gluconobacter oxydans. Bioprocess Biosyst Eng 2003;26:109-116.
31. Herrmann U, Merfort M, Jeude M, Bringer-Meyer S, Sahm H: Biotransformation of glucose to 5-keto-D-gluconic acid by recombinant Gluconobacter oxydans DSM 2343. Appl Microbiol Biotechnol 2004;64:86-90.
32. Hölscher T, Görisch H: Knockout and overexpression of pyrroloquinoline quinone biosynthetic genes in Gluconobacter oxydans 621H. J Bact 2006;188:7668-7676.
33. Hoshino T, Sugisawa T, Shinjoh M, Tomiyama N, Miyazaki T: Membrane-bound D-sorbitol dehydrogenase of Gluconobacter suboxydans IFO 3255 - enzymatic and genetic characterization. Biochim Biophys Acta 2003;1647:278-288.
34. Jack R, De Zamaroczy M, Merrick M: The signal transduction protein GlnK is required for NifL-dependent nitrogen control of nif gene expression in Klebsiella pneumoniae. J Bacteriol 1999;181:1156-1162.
35. Jovanovic G, Weiner L, Model P: Identification, nucleotide sequence, and characterization of PspF, the transcriptional activator of the Escherichia coli stress-induced psp operon. J Bacteriol 1996;178:1936-1945.
36. Katsura K, Kawasaki H, Potacharoen W, Saono S, Seki T, Yamada Y, Uchimura T, Komagata K. Asaia siamensis sp. nov., an acetic acid bacterium in the α-proteobacteria. Int J Syst Evol Microbiol 2001;51:559-563.
37. Kersters K, De Ley J: The occurrence of the Entner-Doudoroff pathway in bacteria. Antonie Van Leeuwenhoek 1968;34:393-408.
38. Klasen R, Bringer-Meyer S, Sahm H: Biochemical characterization and sequence analysis of the gluconate: NADP 5-oxidoreductase gene from Gluconobacter oxydans. J Bacteriol 1995;177:2637-2643.
39. Kulhanek M: Microbial dehydrogenations of monosaccharides. Adv Appl Microbiol 1989; 34:141-181.
40. Leisinger T: Untersuchungen zur Systematik und Stoffwechsel der Essigsäurebakterien. Zentbl Bakteriol Parasitenkd Infektionskrankh Hyg Abt II 1965;119:329-376.
41. Li Y, Chen J, Lun SY: Biotechnological production of pyruvic acid. Appl Microbiol Biotechnol 2001;57:451-459.
42. Lisdiyanti P, Kawasaki H, Widyastuti Y, Saono S, Seki T, Yamada Y, Uchimura T, Komagata K: Kozakia baliensis gen. nov., sp. nov., a novel acetic acid bacterium in the α-proteobacteria. Int J Syst Evol Microbiol 2002;52:813-818.
43. Macauley S, McNeil B, Harvey LM: The genus Gluconobacter and its applications in biotechnology. Crit Rev Biotechnol 2001;21:1-25.
44. Matsushita K, Shinagawa E, Adachi O, Ameyama M: Purification and characterization of cytochrome o-type oxidase from Gluconobacter suboxydans. Biochim Biophys Acta 1987;894:304-312.
45. Matsushita K, Nagatani Y, Shinagawa E, Adachi O, Ameyama M: Effect of extracellular pH on the respiratory chain and energetics of Gluconobacter suboxydans. Agric Biol Chem 1989;53:2895-2902.
46. Matsushita K, Toyoma H, Adachi O: Respiratory chains and bioenergetics of acetic acid bacteria. Adv Microb Physiol 1994;36:247-301.
47. Matsushita K, Fujii Y, Ano Y, Toyama H, Shinjoh M, Tomiyama N, Miyazaki T, Sugisawa T, Hoshino T, Adachi O: 5-Keto-D-gluconate production is catalyzed by a quinoprotein glycerol dehydrogenase, major polyol dehydrogenase, in Gluconobacter species. Appl Environ Microbiol 2003;69:1959-1966.
48. Matsushita K, Toyama H, Adachi O: Respiratory chains in acetic acid bacteria: membrane-bound periplasmic sugar and alcohol respirations; in Zannoni D (ed): Respiration in Archaea and Bacteria, vol 2: Diversity of Prokaryotic Respiratory Systems. Dordrecht, Springer, 2004, vol 2, pp 81-99.
49. Matsushita K, Inoue G, Theeragool J, Trcek H, Toyama H, Adachi O: Acetic acid production in acetic acid bacteria leading to their 'death' and survival; in Yamada M (ed): Survival and Death in Bacteria. Kerala/India, Research Signpost, 2005, pp 169-181.
50. Miller MJ, Gennis RB: The cytochrome d complex is a coupling site in the aerobic respiratory chain of Escherichia coli. J Biol Chem 1985;260:14003-14008.
51. Moonmangmee D, Fujii Y, Toyama H, Theeragool G, Lotong N, Matsushita K, Adachi O: Purification and characterization of membrane-bound quinoprotein cyclic alcohol dehydrogenase from Gluconobacter frateurii CHM 9. Biosci Biotechnol Biochem 2001;65:2763-2772.
52. Moonmangmee S, Kawabata K, Tanaka S, Toyama H, Adachi O, Matsushita K: A novel polysaccharide involved in the pellicle formation of Acetobacter aceti. J Biosci Bioeng 2002a;93:192-200.
53. Moonmangmee D, Adachi O, Shinagawa E, Toyama H, Theeragool G, Lotong N, Matsushita K: L-Erythrulose production by oxidative fermentation is catalyzed by PQQ-containing membrane-bound dehydrogenase. Biosci Biotechnol Biochem 2002b;66:307-318.
54. Olijve W: Glucose metabolism in Gluconobacter oxydans; PhD Thesis, University of Groningen, 1978.
55. Olijve W, Kok JJ: Analysis of growth of Gluconobacter oxydans in glucose-containing media. Arch Microbiol 1979;121:283-290.
56. Parmentier S, Beauprez J, Arnaut F, Soetaert W, Vandamme EJ: Gluconobacter oxydans NAD-dependent, D-fructose reducing, polyol dehydrogenases activity: screening, medium optimisation and application for enzymatic polyol production. Biotechnol Lett 2005;27:305-311.
57. Pronk JT, Levering PR, Olijve W, van Dijken JP: Role of NADP-dependent and quinoprotein glucose dehydrogenase in gluconic acid production by Gluconobacter oxydans. Enzyme Microb Technol 1989;11:160-164.
58. Prust C, Hoffmeister M, Liesegang H, Wiezer A, Fricke WF, Ehrenreich A, Gottschalk G, Deppenmeier U: Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans. Nat Biotechnol 2005;23:195-200.
59. Ross P, Mayer R, Benziman M: Cellulose biosynthesis and function in bacteria. Microbiol Rev 1991;55:5-58.
60. Sauer U, Canonaco F, Heri S, Perrenoud A, Fischer E: The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli. J Biol Chem. 2004;279:6613-6619.
61. Schweiger P, Volland S, Deppenmeier U: Overproduction and characterization of two distinct aldehyde-oxidizing enzymes from Gluconobacter oxydans 621H. J Mol Microbiol Biotechnol 2007;13:147-155.
62. Shibata T, Ichikawa C, Matsuura M, Takata Y, Noguchi Y, Saito Y, Yamashita M: Cloning of a gene for D-sorbitol dehydrogenase from Gluconobacter oxydans G624 and expression of the gene in Pseudomonas putida IFO3738. J Biosci Bioeng 2000;89:463-468.
63. Shinagawa E, Matsushita K, Adachi O, Ameyama M: Purification and characterization of 2-keto-D-gluconate dehydrogenase from Gluconobacter melanogenus . Agric Biol Chem 1981;45:1079-1085.
64. Shinagawa E, Matsushita K, Adachi O, Ameyama M: Purification and characterization of D-sorbitol dehydrogenase from membrane of Gluconobacter suboxydans var. α. Agric Biol Chem 1982;46:135-141.
65. Shinjoh M, Tazoe M, Hoshino T: NADPH-dependent L-sorbose reductase is responsible for L-sorbose assimilation in Gluconobacter suboxydans IFO 3291. J Bacteriol 2002;184:861-863.
66. Sievers M, Swings J: Family II. Acetobacteraceae; in Garrity G, Brenner DJ, Krieg NR, Staley JT (eds): Bergey's Manual of Systematic Bacteriology. New York, Springer, 2005, vol 2c, pp 41-95.
67. Sugiyama M, Suzuki S, Tonouchi N, Yokozeki K: Cloning of the xylitol dehydrogenase from Gluconobacter oxydans and improved production of xylitol from arabitol. Biosci Biotechnol Biochem 2003;67:584-591.
68. Svitel J, Tkac J, Vostiar I, Navratil M, Stefuca V, Bucko M, Gemeiner P: Gluconobacter in biosensors: applications of whole cells and enzymes isolated from Gluconobacter and Acetobacter to biosensor construction. Biotechnol Lett 2006;28:2003-2010.
69. Tong RC, Glavas NA, Bragg PD: Topological analysis of the pyridine nucleotide transhydrogenase of Escherichia coli using proteolytic enzymes. Biochim Biophys Acta 1991;1080:19-28.
70. Toyama H, Soemphol W, Moonmangmee D, Adachi O, Matsushita K: Molecular properties of membrane-bound FAD-containing D-sorbitol dehydrogenase from thermotolerant Gluconobacter frateurii isolated from Thailand. Biosci Biotechnol Biochem 2005; 69:1120-1129.
71. Vangnai AS, Toyama H, De-Eknamkul W, Yoshihara N, Adachi O, Matsushita K: Quinate oxidation in Gluconobacter oxydans IFO3244: purification and characterization of quinoprotein quinate dehydrogenase. FEMS Microbiol Lett 2004;241:157-162.
72. Van Heeswijk WC, Hoving S, Molenaar D, Stegeman B, Kahn D, Westerhoff HV: An alternative PII protein in the regulation of glutamine synthetase in Escherichia coli . Mol Microbiol 1996;21:133-146.
73. Weenk G, Olijve W, Harder W: Ketogluconate formation by Gluconobacter species. Appl Microbiol Biotechnol 1984;20:400-405.
74. Williams R, Cotton NP, Thomas CM, Jackson JB: Cloning and sequencing of the genes for the proton-translocating nicotinamide nucleotide transhydrogenase from Rhodospirillum rubrum and the implications for the domain structure of the enzyme. Microbiology 1994;140:1595-1604.
75. Yamada Y, Hoshino K, Ishikawa T: The phylogeny of acetic acid bacteria based on the partial sequences of 16S ribosomal RNA: the elevation of the subgenus Gluconacetobacter to the generic level. Biosci Biotechnol Biochem 1997;61:1244-1251.
76. Yamada Y, Hosono R, Lisdyanti P, Widyastuti Y, Saono S, Uchimura T, Komagata K: Identification of acetic acid bacteria isolated from Indonesian sources, especially of isolates classified in the genus Gluconobacter . J Gen Appl Microbiol 1999;45:23-28.
77. Yamada Y, Katsura K, Kawasaki H, Widyastuti Y, Saono S, Seki T, Uchimura T, Komagata K: Asaia bogorensis gen. nov., sp. nov., an unusual acetic acid bacterium in the α-Proteobacteria. Int J Syst Evol Microbiol 2000;50:823-829.