메뉴 건너뛰기




Volumn 103, Issue 483, 2008, Pages 961-975

Stochastic networks in nanoscale biophysics: Modeling enzymatic reaction of a single protein

Author keywords

Autocorrelation function; Continuous time Markov chain; First passage time; Goodness of fit; Maximum likelihood estimates; Michaelis menten model; Reaction rate

Indexed keywords


EID: 54949151918     PISSN: 01621459     EISSN: None     Source Type: Journal    
DOI: 10.1198/016214507000001021     Document Type: Article
Times cited : (17)

References (41)
  • 1
    • 0017040058 scopus 로고
    • Free-Energy Profile for the Reaction Catalyzed by Triosephosphate Isomerase
    • Albery, W. J., and Knowles, J. R. (1976), "Free-Energy Profile for the Reaction Catalyzed by Triosephosphate Isomerase," Biochemistry, 15, 5627-5631.
    • (1976) Biochemistry , vol.15 , pp. 5627-5631
    • Albery, W.J.1    Knowles, J.R.2
  • 2
    • 0347623370 scopus 로고    scopus 로고
    • Kinesin Moves by an Asymmetric Hand-Over-Hand Mechanism
    • Asbury, C., Fehr, A., and Block, S. M. (2003), "Kinesin Moves by an Asymmetric Hand-Over-Hand Mechanism," Science, 302, 2130-2134.
    • (2003) Science , vol.302 , pp. 2130-2134
    • Asbury, C.1    Fehr, A.2    Block, S.M.3
  • 4
    • 33744775760 scopus 로고    scopus 로고
    • Asymptotic Analysis of Multiscale Approximations to Reaction Networks
    • Ball, K., Kurtz, T. G., Popovic, L., and Rempala, G. (2006), "Asymptotic Analysis of Multiscale Approximations to Reaction Networks," Annals of Applied Probability, 16, 1925-1961.
    • (2006) Annals of Applied Probability , vol.16 , pp. 1925-1961
    • Ball, K.1    Kurtz, T.G.2    Popovic, L.3    Rempala, G.4
  • 6
    • 0019522622 scopus 로고
    • On the Stochastic Properties of Single Ion Channels
    • Proceedings of the Royal Society London
    • Colquhoun, D., and Hawkes, A. G. (1981), "On the Stochastic Properties of Single Ion Channels," Proceedings of the Royal Society London, Ser. B, 211, 205-235.
    • (1981) Ser. B , vol.211 , pp. 205-235
    • Colquhoun, D.1    Hawkes, A.G.2
  • 10
    • 20044379583 scopus 로고    scopus 로고
    • Stretched Exponential Decay and Correlations in the Catalytic Activity of Fluctuating Single Lipase Molecules
    • Flomembom, O., et al. (2005), "Stretched Exponential Decay and Correlations in the Catalytic Activity of Fluctuating Single Lipase Molecules," Proceedings of the National Academy of Sciences of the United States of America, 102, 2368-2372.
    • (2005) Proceedings of the National Academy of Sciences of the United States of America , vol.102 , pp. 2368-2372
    • Flomembom, O.1
  • 12
    • 54949087684 scopus 로고    scopus 로고
    • Glasserman, P, Sigman, K, and Yao, D, eds, New York: Springer-Verlag
    • Glasserman, P., Sigman, K., and Yao, D. (eds.) (1996), Stochastic Networks: Stability and Rare Events, New York: Springer-Verlag.
    • (1996) Stochastic Networks: Stability and Rare Events
  • 15
    • 0028178377 scopus 로고
    • Three-Dimensional Structure of β-Galactosidase From E. coli
    • Jacobson, R. H., Zhang, X. J., DuBose, R. F., and Matthews, B. W. (1994), "Three-Dimensional Structure of β-Galactosidase From E. coli," Nature, 369, 761-766.
    • (1994) Nature , vol.369 , pp. 761-766
    • Jacobson, R.H.1    Zhang, X.J.2    DuBose, R.F.3    Matthews, B.W.4
  • 18
    • 0009552039 scopus 로고
    • Kelly, F. P, and Williams, R. J, eds, New York: Springer-Verlag
    • Kelly, F. P., and Williams, R. J. (eds.) (1995), Stochastic Networks, New York: Springer-Verlag.
    • (1995) Stochastic Networks
  • 20
    • 54949102951 scopus 로고    scopus 로고
    • Stochastic Modeling in Nanoscale Biophysics: Subdiffusion Within Proteins
    • Kou, S. C. (2008), "Stochastic Modeling in Nanoscale Biophysics: Subdiffusion Within Proteins," Annals of Applied Statistics, 2, 501-535.
    • (2008) Annals of Applied Statistics , vol.2 , pp. 501-535
    • Kou, S.C.1
  • 21
    • 19744382497 scopus 로고    scopus 로고
    • Generalized Langevin Equation With Fractional Gaussian Noise: Subdiffusion Within a Single Protein Molecule
    • 93, 180603(1)-1806034
    • Kou, S. C., and Xie, X. S. (2004), "Generalized Langevin Equation With Fractional Gaussian Noise: Subdiffusion Within a Single Protein Molecule," Physical Review Letters, 93, 180603(1)-180603(4).
    • (2004) Physical Review Letters
    • Kou, S.C.1    Xie, X.S.2
  • 23
    • 18444379363 scopus 로고    scopus 로고
    • Bayesian Analysis of Single-Molecule Experimental Data (with discussion)
    • Kou, S. C., Xie, X. S., and Liu, J. S. (2005b), "Bayesian Analysis of Single-Molecule Experimental Data" (with discussion), Journal of the Royal Statistical Society, Ser. C, 54, 469-506.
    • (2005) Journal of the Royal Statistical Society, Ser. C , vol.54 , pp. 469-506
    • Kou, S.C.1    Xie, X.S.2    Liu, J.S.3
  • 25
    • 0032484096 scopus 로고    scopus 로고
    • Single-Molecule Enzymatic Dynamics
    • Lu, H. P., Xun, L., and Xie, X. S. (1998), "Single-Molecule Enzymatic Dynamics," Science, 282, 1877-1882.
    • (1998) Science , vol.282 , pp. 1877-1882
    • Lu, H.P.1    Xun, L.2    Xie, X.S.3
  • 28
    • 27144465458 scopus 로고    scopus 로고
    • Observation of a Power Law Memory Kernel for Fluctuations Within a Single Protein Molecule
    • 94, 198302(1)-1983024
    • Min, W., Luo, G., Cherayil, B., Kou, S. C., and Xie, X. S. (2005b), "Observation of a Power Law Memory Kernel for Fluctuations Within a Single Protein Molecule," Physical Review Letters, 94, 198302(1)-198302(4).
    • (2005) Physical Review Letters
    • Min, W.1    Luo, G.2    Cherayil, B.3    Kou, S.C.4    Xie, X.S.5
  • 29
    • 0037034404 scopus 로고    scopus 로고
    • A Dozen Years of Single-Molecule Spectroscopy in Physics, Chemistry, and Biophysics
    • Moerner, W. (2002), "A Dozen Years of Single-Molecule Spectroscopy in Physics, Chemistry, and Biophysics," Journal of Physical Chemistry B, 106, 910-927.
    • (2002) Journal of Physical Chemistry B , vol.106 , pp. 910-927
    • Moerner, W.1
  • 32
    • 0000013996 scopus 로고
    • Network Theory of Microscopic and Macroscopic Behavior of Master Equation Systems
    • Schnakenberg, J. (1976), "Network Theory of Microscopic and Macroscopic Behavior of Master Equation Systems," Reviews of Modern Physics, 48, 571-585.
    • (1976) Reviews of Modern Physics , vol.48 , pp. 571-585
    • Schnakenberg, J.1
  • 36
    • 0033813064 scopus 로고    scopus 로고
    • Measuring Conformational Dynamics of Biomolecules by Single Molecule Fluorescence Spectroscopy
    • Weiss, S. (2000), "Measuring Conformational Dynamics of Biomolecules by Single Molecule Fluorescence Spectroscopy," Nature Structural Biology, 7, 724-729.
    • (2000) Nature Structural Biology , vol.7 , pp. 724-729
    • Weiss, S.1
  • 38
    • 0001468698 scopus 로고    scopus 로고
    • Optical Studies of Single Molecules at Room Temperature
    • Xie, X. S., and Trautman, J. K. (1998), "Optical Studies of Single Molecules at Room Temperature," Annual Review of Physical Chemistry, 49, 441-480.
    • (1998) Annual Review of Physical Chemistry , vol.49 , pp. 441-480
    • Xie, X.S.1    Trautman, J.K.2
  • 40
    • 0035913536 scopus 로고    scopus 로고
    • Two-Event Echos in Single-Molecule Kinetics: A Signature of Conformational Fluctuations
    • Yang, S., and Cao, J. (2001), "Two-Event Echos in Single-Molecule Kinetics: A Signature of Conformational Fluctuations," Journal of Physical Chemistry B, 105, 6536-6549.
    • (2001) Journal of Physical Chemistry B , vol.105 , pp. 6536-6549
    • Yang, S.1    Cao, J.2
  • 41
    • 0037165996 scopus 로고    scopus 로고
    • Correlating Structural Dynamics and Function in Single Ribozyme Molecules
    • Zhuang, X., Kim, H., Pereira, M., Babcock, H., Walter, N., and Chu, S. (2002), "Correlating Structural Dynamics and Function in Single Ribozyme Molecules," Science, 296, 1473-1476.
    • (2002) Science , vol.296 , pp. 1473-1476
    • Zhuang, X.1    Kim, H.2    Pereira, M.3    Babcock, H.4    Walter, N.5    Chu, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.