Stretched exponential decay and correlations in the catalytic activity of fluctuating single lipase molecules

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 7, 2005, Pages 2368-2372

  Flomenbom, Ophir ^a   Velonia, Kelly ^b   Loos, Davey ^c   Masuo, Sadahiro ^c   Cotlet, Mircea ^c   Engelborghs, Yves ^d   Hofkens, Johan ^c   Rowan, Alan E ^b   Nolte, Roeland J M ^b   Van Auweraer, Mark Der ^c   De Schryver, Frans C ^c   Klafter, Joseph ^a  

^a TEL AVIV UNIVERSITY   (Israel)

^b RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

^c UNIVERSITY OF LEUVEN   (Belgium)

^d Lab of Chem and Biol Dynamics   (Belgium)

Author keywords

Single enzyme activity; Two state trajectories

Indexed keywords

TRIACYLGLYCEROL LIPASE;

ARTICLE; CONCENTRATION (PARAMETERS); CONFOCAL MICROSCOPY; CONFORMATIONAL TRANSITION; DENSITY FUNCTIONAL THEORY; ENZYME ACTIVITY; ENZYME MECHANISM; FLUORESCENCE MICROSCOPY; MODEL; MOLECULAR DYNAMICS; OSCILLATION; PRIORITY JOURNAL; TECHNIQUE;

BIOPHYSICS; CANDIDA; KINETICS; LIPASE; MODELS, BIOLOGICAL; PROTEIN CONFORMATION; THERMODYNAMICS;

EID: 20044379583     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0409039102     Document Type: Article

References (36)

1. Vale, R. D., Funantsu, T., Pierce, D. W., Romberg, L., Harada, Y. & Yanagida, T. (1996) Nature 380, 451-453.
2. Funantsu, T., Harada, Y., Tokunaga, M., Saito, K. & Yanagida, T. (1995) Nature 374, 555-559.
3. Ishijima, A., Kojima, H., Funantsu, T., Tokunaga, M., Higucki, H., Tanaka, H. & Yanagida, T. (1998) Cell 92, 161-171.
4. Noji, H., Yasuda, R., Yoshida, M. & Kinosita, K. (1997) Nature 386, 299-302.
5. Yasuda, R., Moji, H., Kinoshita, K. & Yoshida, M. (1998) Cell 93, 1117-1124.
6. Lu, H., Xun, L. & Xie, X. S. (1998) Science 282, 1877-1882.
7. Edman, L., Földes-Papp, Z., Wennmalm, S. & Rigler, R. (1999) Chem. Phys. 247, 11-22.
8. Edman, L. & Rigler, R. (2000) Proc. Natl. Acad. Sci. USA 97, 8266-8271.
9. Ha, T., Ting, A. Y., Liang, J., Caldwell, W. B., Deniz, A. A., Chemla, D. S., Schultz, P. G. & Weiss, S. (1999) Proc. Natl. Acad. Sci. USA 96, 893-898.
10. Hübner, C. G., Zumofen, G., Renn, A., Herrmann, A., Müllen, K. & Basché, T. (August 27, 2003) Phys. Rev. Lett., 10.1103/PhysRevLett. 91.093903.
11. H. Yang, Luo, G., Karnchanaphanurach, P., Louie, T.-M., Rech, I., Cova, S., Xun, L. & Xie, X.S. (2003) Science 302, 262-266.
12. Chen, Y., Hu, D., Vorpagel, E. R. & Lu, H. P. (2003) J. Phys. Chem. B 107, 7947-7956.
13. Richter-Dyn, N. & Goel., N. S. (1974) Stochastic Models in Biology (Academic, New York).
14. Alberts, B., Roberts, K., Bray, D., Lewis, J., M. Raff, M. & Watson., J. D. (1994) Molecular Biology of the Cell (Garland, New York).
15. Uppenberg, J., Hansen, M. T., Patkar, S. & Jones, T. A. (1994b) Structure (London) 2, 293-307.
16. Uppenberg, J., Öhrner, N., Norin, M., Hult, K., Kleywegt, G. J., Patkar, S., Waagen, V., Anthinsen, T. & Jones, A. (1995) Biochemistry 34, 16838-16851.
17. Andersen, E. M., Larsoon, K. M. & Kirk, O. (1998) Biocatalysis Biotransformation 16, 181-204.
18. Marches, R., Vitetta, E. S. & Uhr, J. W. (2001) Proc. Natl. Acad. Sci. USA 98, 3434-3439.
19. Heo, J., Thomas, K. J., Seong, G. H. & Crooks, R. M. (2003) Anal. Chem. 75, 22-26.
20. Velonia, K., Flomenbom, O., Loos, D., Masuo, S., Cotlet, M., Engelborghs, Y., Hofkens, J., Rowan, A. E., Klafter, J., Nolte, R. J. M. & de Schryver, F. C. (2005) Angew. Chem. Int. Ed. 44, 560-564.
21. Panchuk-Voloshina, N., Haugland, R. P., Bishop-Stewart, J., Bhalgat, M. K., Millard, P. J., Mao, F., Leung, W. Y. & Haugland, R.P. (1999) J. Histochem. Cytochem. 47, 1179-1188.
22. Kumar, R. K., Chapple, C. C. & Hunter, N. (1999) J. Histochem. Cytochem. 47, 1213-1218.
23. Klafter, J. & Shlesinger, M. F. (1986) Proc. Nat. Acad. Sci. USA 83, 848-851.
24. Abramowitz, M. & Stegun, I. A. (1964) Handbook of Mathematical Functions with Formulas, Graphs, and Mathematical Table (U.S. Government Printing Office, Washington, DC).
25. Metzler, R., Klafter, J. & Jortner, J. (1999) Proc. Natl. Acad. Sci. USA 96, 11085-11089.
26. Boguñá, M., Berezhkovskii, A. M. & Weiss, G. H. (2000) Physica A 282, 475-485.
27. Verberk, R. & Orrit, M. (2003) J. Chem. Phys. 119, 2214-2222.
28. Margolin, G. & Barkai, E. (2004) J. Chem. Phys. 121, 1566-1577.
29. Schenter, G. K., Lu, H. P. & Xie, X. S. (1999) J. Phys. Chem. A 103, 10477-10488.
30. Cao, J. (2000) Chem. Phys. Lett. 327, 38-44.
31. Yang, S. & Cao, J. (2002) J. Chem. Phys. 117, 10996-11009.
32. Frauenfelder, H., McMahon, B. H., Austin, R. H., Chu, K. & Groves, J. T. (2001) Proc. Natl. Acad. Sci. USA 98, 2370-2374.
33. Frauenfelder, H., Wolynes, P. G. & Austin, R. H. (1999) Rev. Mod. Phys. 71, S419-S430.
34. Lindsey, C. P. & Patterson, G. D. (1980) J. Chem. Phys. 73, 3348.
35. Dishon, M., Bendler, J. T. & Weiss, G. H. (1990) J. Res. Natl. Stand. Technol. 95, 433.
36. Weiss, G. H. (1994) Aspects and Applications of the Random Walk (North-Holland, New York).