메뉴 건너뛰기




Volumn 1, Issue 1, 2006, Pages

A bayesian network driven approach to model the transcriptional response to nitric oxide in Saccharomyces cerevisiae

Author keywords

[No Author keywords available]

Indexed keywords

GLUCOSE; HEMOGLOBIN; NITRIC OXIDE; DIOXYGENASE; HEMOPROTEIN; HYBRID PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN; YHB1 PROTEIN, S CEREVISIAE;

EID: 54949116534     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0000094     Document Type: Article
Times cited : (7)

References (29)
  • 1
    • 0033968059 scopus 로고    scopus 로고
    • Reactive nitrogen intermediates and the pathogenesis of Salmonella and mycobacteria
    • Shiloh MU, Nathan CF (2000) Reactive nitrogen intermediates and the pathogenesis of Salmonella and mycobacteria. Curr Opin Microbial 3: 35-42.
    • (2000) Curr Opin Microbial , vol.3 , pp. 35-42
    • Shiloh, M.U.1    Nathan, C.F.2
  • 2
    • 0034255209 scopus 로고    scopus 로고
    • Reactive oxygen and nitrogen intermediates in the relationship between mammalian hosts and microbial pathogens
    • Nathan C, Shiloh MU (2000) Reactive oxygen and nitrogen intermediates in the relationship between mammalian hosts and microbial pathogens. Proc Natl Acad Sci U S A 97: 8841-8848.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 8841-8848
    • Nathan, C.1    Shiloh, M.U.2
  • 3
    • 4143066916 scopus 로고    scopus 로고
    • Mechanisms of resistance to oxidative and nitrosative stress: Implications for fungal survival in mammalian hosts
    • Missall TA, Lodge JK, McEwen JE (2004) Mechanisms of resistance to oxidative and nitrosative stress: implications for fungal survival in mammalian hosts. Eukaryot Cell 3: 835 846.
    • (2004) Eukaryot Cell , vol.3 , pp. 835-846
    • Missall, T.A.1    Lodge, J.K.2    McEwen, J.E.3
  • 4
    • 4844227764 scopus 로고    scopus 로고
    • Antimicrobial reactive oxygen and nitrogen species: Concepts and controversies
    • Fang FC (2004) Antimicrobial reactive oxygen and nitrogen species: concepts and controversies. Nat Rev Microbial 2: 820-832.
    • (2004) Nat Rev Microbial , vol.2 , pp. 820-832
    • Fang, F.C.1
  • 5
    • 0003692882 scopus 로고    scopus 로고
    • New York: Kluwer Academic/ Plenum Publishers. xxv, 517 p.p
    • Fang FG (1999) Nitric oxide and infection. New York: Kluwer Academic/ Plenum Publishers. xxv, 517 p.p.
    • (1999) Nitric oxide and infection
    • Fang, F.G.1
  • 6
    • 26244433294 scopus 로고    scopus 로고
    • Hromatka BS, Noble SM, Johnson AD (2005) Transcriptional Response of C. albicans to Nitric Oxide and the Role of the YHB1 Gene in Nitrosative Stress and Virulence. Mol Biol Cell.
    • Hromatka BS, Noble SM, Johnson AD (2005) Transcriptional Response of C. albicans to Nitric Oxide and the Role of the YHB1 Gene in Nitrosative Stress and Virulence. Mol Biol Cell.
  • 9
    • 0033637153 scopus 로고    scopus 로고
    • Genomic expression programs in the response of yeast cells to environmental changes
    • Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, et al. (2000) Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 11: 4241-4257.
    • (2000) Mol Biol Cell , vol.11 , pp. 4241-4257
    • Gasch, A.P.1    Spellman, P.T.2    Kao, C.M.3    Carmel-Harel, O.4    Eisen, M.B.5
  • 10
    • 54949103662 scopus 로고    scopus 로고
    • Pearl J (1988) Probabalistic reasoning in intelligent systems: networks of plausible inference. San MateoCalif.: Morgan Kaufmann Publishers. xix, 552 p.
    • Pearl J (1988) Probabalistic reasoning in intelligent systems: networks of plausible inference. San MateoCalif.: Morgan Kaufmann Publishers. xix, 552 p.
  • 12
    • 17644427718 scopus 로고    scopus 로고
    • Causal protein-signaling networks derived from multiparameter single-cell data
    • Sachs K, Perez O, Pe'er D, Lauffenburger DA, Nolan GP (2005) Causal protein-signaling networks derived from multiparameter single-cell data. Science 308: 523-529.
    • (2005) Science , vol.308 , pp. 523-529
    • Sachs, K.1    Perez, O.2    Pe'er, D.3    Lauffenburger, D.A.4    Nolan, G.P.5
  • 13
    • 0842309161 scopus 로고    scopus 로고
    • Discovering Molecular Pathways from Protein Interaction and Gene Expression data
    • Segal E, Koller D (2003) Discovering Molecular Pathways from Protein Interaction and Gene Expression data. Bioinformatics 1: 1-9.
    • (2003) Bioinformatics , vol.1 , pp. 1-9
    • Segal, E.1    Koller, D.2
  • 14
    • 0037941585 scopus 로고    scopus 로고
    • Module networks: Identifying regulatory modules and their condition- specific regulators from gene expression data
    • Segal E, Shapira M, Regev A, Pe'er D, Botstein D, et al. (2003) Module networks: identifying regulatory modules and their condition- specific regulators from gene expression data. Nat Genet 34: 166-176.
    • (2003) Nat Genet , vol.34 , pp. 166-176
    • Segal, E.1    Shapira, M.2    Regev, A.3    Pe'er, D.4    Botstein, D.5
  • 15
    • 2442446708 scopus 로고    scopus 로고
    • Genome-wide discovery of transcriptional modules from DNA sequence and gene expression
    • Segal E, Yelensky R, Koller D (2003) Genome-wide discovery of transcriptional modules from DNA sequence and gene expression. Bioinformatics 19 Suppl 1: 1273-1282.
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1 , pp. 1273-1282
    • Segal, E.1    Yelensky, R.2    Koller, D.3
  • 16
    • 1942453302 scopus 로고    scopus 로고
    • Predicting gene expression from sequence
    • Beer MA, Tavazoie S (2004) Predicting gene expression from sequence. Cell 117: 185-198.
    • (2004) Cell , vol.117 , pp. 185-198
    • Beer, M.A.1    Tavazoie, S.2
  • 17
    • 18144442687 scopus 로고    scopus 로고
    • Inferring subnetworks from perturbed expression profiles
    • Pe'er D, Regev A, Elidan G, Friedman N (2001) Inferring subnetworks from perturbed expression profiles. Bioinformatics 17: S215-224.
    • (2001) Bioinformatics , vol.17
    • Pe'er, D.1    Regev, A.2    Elidan, G.3    Friedman, N.4
  • 18
  • 19
    • 0035221560 scopus 로고    scopus 로고
    • Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks
    • Hartemink AJ, Gifford DK, Jaakkola TS, Young RA (2001) Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. Pac Symp Biocomput: 422-433.
    • (2001) Pac Symp Biocomput , pp. 422-433
    • Hartemink, A.J.1    Gifford, D.K.2    Jaakkola, T.S.3    Young, R.A.4
  • 20
    • 34249761849 scopus 로고
    • I-earning Bayesian networks: The combination of knowledge and statistical data
    • Heckerman D, Geiger G, Chickering D (1995) I-earning Bayesian networks: the combination of knowledge and statistical data. Machine Learning 20: 197-243.
    • (1995) Machine Learning , vol.20 , pp. 197-243
    • Heckerman, D.1    Geiger, G.2    Chickering, D.3
  • 22
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi JL, Iyer VR, Brown PO (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 23
    • 54949130683 scopus 로고    scopus 로고
    • Broach JR, Pringle JR, Jones EW (1991) The Molecular and cellular biology of the yeast Saccharomyces. Cold Spring HarborN.Y.: Cold Spring Harbor Laboratory Press. v. 1-3 p.
    • Broach JR, Pringle JR, Jones EW (1991) The Molecular and cellular biology of the yeast Saccharomyces. Cold Spring HarborN.Y.: Cold Spring Harbor Laboratory Press. v. 1-3 p.
  • 24
    • 0032441150 scopus 로고    scopus 로고
    • Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Arad Sci U S A 95: 14863-14868.
    • Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Arad Sci U S A 95: 14863-14868.
  • 25
    • 0002370418 scopus 로고    scopus 로고
    • A tutorial on learning with Bayesian networks
    • Jordan MI, ed, CambridgeMass, MIT Press
    • Heckerman D (1999) A tutorial on learning with Bayesian networks. In: Jordan MI, ed. Learning in graphical models. CambridgeMass.: MIT Press: 301-354.
    • (1999) Learning in graphical models , pp. 301-354
    • Heckerman, D.1
  • 26
    • 54949131449 scopus 로고    scopus 로고
    • Friedman N (1998) The Bayesian structural EM algorithm. In: SCGM, ed. Madison WI, USA: Morgan Kaufmann Publishers 24-26 July: 129-138.
    • Friedman N (1998) The Bayesian structural EM algorithm. In: SCGM, ed. Madison WI, , USA: Morgan Kaufmann Publishers 24-26 July: 129-138.
  • 27
  • 29
    • 0029818837 scopus 로고    scopus 로고
    • Function and expression of flavohemoglobin in Saccharomyces cerevisiae. Evidence for a role in the oxidative stress response
    • Zhao XJ, Raitt D, P VB, Clewell AS, Kwast KE, et al. (1996) Function and expression of flavohemoglobin in Saccharomyces cerevisiae. Evidence for a role in the oxidative stress response. J Biol Chem 271: 25131-25138.
    • (1996) J Biol Chem , vol.271 , pp. 25131-25138
    • Zhao, X.J.1    Raitt, D.2    VB, P.3    Clewell, A.S.4    Kwast, K.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.