External stimuli mediate collective rhythms: Artificial control strategies

PLoS ONE

Volumn 2, Issue 2, 2007, Pages

  Zhou, Tianshou ^a   Zhang, Jiajun ^a   Yuan, Zhanjiang ^a   Xu, Anlong ^a  

^a SUN YAT SEN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

TISSUE FACTOR PATHWAY INHIBITOR; BACTERIAL PROTEIN; BACTERIAL RNA; ESCHERICHIA COLI PROTEIN; LAC REPRESSOR; LACI PROTEIN, E COLI; LUXI PROTEIN, BACTERIA; MESSENGER RNA; SYNTHETIC DNA; TETR(B) PROTEIN, E COLI; TRANSCRIPTION FACTOR;

ARTICLE; BIOLOGICAL RHYTHM; CELL SYNCHRONIZATION; CONTROL STRATEGY; CONTROLLED STUDY; ESCHERICHIA COLI; GENE EXPRESSION; INFORMATION PROCESSING; NONHUMAN; OSCILLATION; OSCILLATOR; QUORUM SENSING; SIGNAL TRANSDUCTION; STIMULUS RESPONSE; BIOLOGICAL MODEL; BIOSYNTHESIS; DOSE RESPONSE; DRUG ADMINISTRATION; DRUG EFFECT; GENE EXPRESSION REGULATION; GENETICS; PHYSIOLOGY; PROMOTER REGION;

BACTERIAL PROTEINS; BIOLOGICAL CLOCKS; DOSE-RESPONSE RELATIONSHIP, DRUG; DRUG ADMINISTRATION SCHEDULE; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GENES, SYNTHETIC; LAC REPRESSORS; MODELS, BIOLOGICAL; PROMOTER REGIONS, GENETIC; QUORUM SENSING; RNA, BACTERIAL; RNA, MESSENGER; TRANSCRIPTION FACTORS;

EID: 54949090316     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0000231     Document Type: Article

References (28)

1. Simoin PM, Daubenspeck JA, Leiter JC (2000) Vagal feedback in the entrainment of respiration to mechanical ventilation in sleeping humans. J. Appl. Physiol. 89: 760-769.
2. Wagemakers A, Buldũ JM, Garcia-Ojalvo J, Sanjuaãn MAF (2006) Synchronization of electronic genetic networks. Chaos 16: 013127.
3. Kaplan DT, Clay JR, Manning T, Glass L, Guevara MR, et al. (1996) Subthrehold dynamics in periodically stimulated squid giant axons. Phys. Rev. Let. 76: 4074-4077.
4. Goldbeter A (1996) Biochemical oscillations and cellular rhythms: The molecular bases of periodic and chaotic behaviors. Cambridge: Cambridge University Press.
5. Schultz TF, Kay SA (2003) Circadian clocks in daily and seasonal control of development. Science 301: 326-328.
6. Hasty J, McMillen D, Collins JJ (2002) Engineered gene circiuts. Nature 420: 224-230.
7. Elowitz MB, Leibler M (2000) A synthetic network of transcriptional regulators. Nature 403: 335-338.
8. Hasty J, Isaacs F, Dolnik M, McMillen D, Collins JJ (2001) Designer gene networks: Towards fundamental cellular control. Chaos 11: 207-220.
9. Chen W, Kallio P, Bailey JE (1993) Construction and characterization of a novel cross-regulation system for regulating cloned gene expression in Escherichia coli. Genetics 130: 15-22.
10. Lai Y, Kandangath A, Gaudet JA, de Moura APS (2005) Inducing chaos by resonance perturbations: theory and experiment. Phys. Rev. Lett. 94: 214101.
11. Liu B, Zhang Y, Chen L (2005) Dynamics complexities in a Lotka-Volterra predator-prey model concerning impulsive control strategy. Int. J. Bifur. and Chaos 15: 517-531.
12. Tang S, Chen L (2003) Quasiperiodic solutions and chaos in a periodically forced predator-prey model with age structure for predator. Int. J. Bifur. Chaos 973-980.
13. Bassler BL (1999) How bacterial talk to each other: Regulation of gene expression by quorum sensing. Curr. Opin. Microbiol. 2: 582-587.
14. Fuqua C, Winans S, Greenberg EP (1996) Census and concensus in bacterial ecosystems: The LuxR-LuxI family of quorum-sensing transcriptional regulators. Annu. Rev. Microbiol. 50: 727-751.
15. Garcia-Ojalvo J, Elowitz MB, Strogatz SH (2004) Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing. PNAS 101: 10955-10960.
16. McMillen D, Kopell N, Hasty J, Collins JJ (2002) Synchronizing genetic relaxation oscillators by intercell signaling. PNAS 99: 679-684.
17. Zhou TS, Chen LN, Aihara K (2005) Molecular communication through stochastic synchronization induced by extracellular fluctuations. Phys. Rev. Lett. 95: 178103.
18. Kuramoto Y (1984) Chemical Oscillation, Waves and Turbulence. Berlin: Springer. pp. 62-67.
19. Kuramoto Y (2003) Chemical Oscillation, Waves and Turbulence. Tokyo: Springer-Verlag, 1984) (republished by Dover, New York)..
20. Volfson D, Marciniak J, Blake WJ, Ostroff N, Tsimring LS, et al. (2006) Origins of extrinsic variability in eukaryotic gene expression. Nature 439: 861-864.
21. Lebiedz D, Sager S, Bock HG, Lebiedz P (2005) Annihilation of limit-cycle oscillations by identification of critical perturbing stimuli via mixed-integer optimal control. Phys. Rev. Lett. 95: 108303.
22. Glass L, Sun J (1994) Periodic forcing of a limit-cycle oscillator: Fixed points, Arnold tongues, and the global organization of bifurcations. Phys. Rev. E 50: 5077-5084.
23. Pikovisky AS, Rosenblum MG, Kurths J (1996) Synchronization in a population of globally coupled chaotic oscillators. Europhys. Lett. 34(3): 165-170.
24. Osipov GV, Pikovsky AS, Rosenblum MG, Kurths J (1997) Phase synchronization effects in a lattice of nonidentical Roössler oscillators. Phys. Rev. E 55(3): 2353-2361.
25. Gonze D, Bernard S, Waltermann C, Kramer A, Herzel H (2005) Spontaneous synchronization of coupled circadian oscillators. Biophys. J. 89: 120-129.
26. Elowitz MB, Levine AJ, Siggia RD, Swain PS (2002) Stochastic gene expression in a single cell. Science 297: 1183-1186.
27. Ozbudak EM, Thattai M, Kurtser I, Grossman AD, van Oudenaarden A (2002) Regulation of noise in the expression of a single gene. Nat. Genet. 31: 69-73.
28. Paulsson J, Ehrenberg M (2001) Noise in a minimal regulatory network: plasmid copy number control. Quart. Rev. Biophys. 34: 1-59.