Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 30, 2004, Pages 10955-10960

  Garcia Ojalvo, Jordi ^a,b   Elowitz, Michael B ^c   Strogatz, Steven H ^a  

^a Department of Obstetrics Gynecology   (United States)

^b UNIVERSITAT POLITÈCNICA DE CATALUNYA   (Spain)

^c CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL SYNCHRONIZATION; CIRCADIAN RHYTHM; ESCHERICHIA COLI; MATHEMATICAL MODEL; MOLECULAR CLOCK; MOLECULAR INTERACTION; MOLECULAR MODEL; NONHUMAN; OSCILLATOR; PRIORITY JOURNAL;

BACTERIAL PROTEINS; BIOLOGICAL CLOCKS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; KINETICS; MODELS, BIOLOGICAL; OSCILLOMETRY; REPRESSOR PROTEINS; RNA, BACTERIAL; RNA, MESSENGER;

ESCHERICHIA COLI; PROKARYOTA;

EID: 3342965723     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0307095101     Document Type: Article

References (40)

1. Irisawa, H., Brown, H. F. & Giles, W. (1993) Physiol. Rev. 73, 197-227.
2. Reppert, S. M. & Weaver, D. R. (1997) Cell 89, 487-490.
3. Liu, C., Weaver, D. R., Strogatz, S. H. & Reppert, S. M. (1997) Cell 91, 855-860.
4. Herzog, E. D., Takahashi, J. S. & Block, G. D. (1998) Nat. Neurosci. 1, 708-713.
5. Honma, S., Shirakawa, T., Katsuno, Y., Namihira, M. & Honma, K.-I. (1998) Neurosci. Lett. 250, 157-160.
6. Nakamura, W., Honma, S., Shirakawa, T. & Honma, K.-I. (2001) Eur. J. Neurosci. 14, 1-10.
7. Herzog, E. D., Aton, S. J., Numano, R., Sakaki, Y. & Tei, H. (2004) J. Biol. Rhythms 19, 35-46.
8. Goldbeter, A. (1996) Biochemical Oscillations and Cellular Rhythms (Cambridge Univ. Press, Cambridge, U.K.).
9. Hasty, J., McMillen, D. & Collins, J. J. (2002) Nature 420, 224-230.
10. Elowitz, M. B. & Leibler, S. (2000) Nature 403, 335-338.
11. Atkinson, M. R., Savageau, M. A., Myers, J. T. & Ninfa, A. J. (2003) Cell 113, 597-607.
12. Winfree, A. T. (1967) J. Theor. Biol. 16, 15-42.
13. Njus, D., Gooch, V. D. & Hastings, J. W. (1981) Cell Biophys. 3, 223-231.
14. Miller, M. B. & Bassler, B. L. (2001) Annu. Rev. Microbiol. 55, 165-199.
15. You, L., Cox, R. S., III, Weiss, R. & Arnold, F. H. (2004) Nature 428, 868-871.
16. McMillen, D., Kopell, N., Hasty, J. & Collins, J. J. (2002) Proc. Natl. Acad. Sci. USA 99, 679-684.
17. Kuramoto, Y. (1984) Chemical Oscillations, Waves, and Turbulence (Springer, Berlin), pp. 68-77.
18. Kiss, I. Z., Zhai, Y. & Hudson, J. L. (2002) Science 296, 1676-1678.
19. Winfree, A. T. (2002) Science 298, 2336-2337.
20. Enright, J. T. (1980) Science 209, 1542-1545.
21. Somers, D. & Kopell, N. (1995) Physica D 89, 169-183.
22. Needleman, D. J., Tiesinga, P. H. E. & Sejnowski, T. J. (2001) Physica D 155, 324-336.
23. Barkai, N. & Leibler, S. (2000) Nature 403, 267-268.
24. Gonze, D., Halloy, J. & Goldbeter, A. (2002) Proc. Natl. Acad. Sci. USA 99, 673-678.
25. Vilar, J. M. G., Kueh, H. Y., Barkai, N. & Leibler, S. (2002) Proc. Natl. Acad. Sci. USA 99, 5988-5992.
26. Dockery, J. D. & Keener, J. P. (2001) Bull. Math. Biol. 63, 95-116.
27. Elowitz, M. B., Levine, A. J., Siggia, R. D. & Swain, P. S. (2002) Science 297, 1183-1186.
28. Ozbudak, E. M., Thattai, M., Kurtser, I., Grossman, A. D. & van Oudenaarden, A, (2002) Nat. Genet. 31, 69-73.
29. Kaplan, H. B. & Greenberg, E. P. (1985) J. Bacteriol. 163, 1210-1214.
30. Strogatz, S. H. (2000) Physica D 143, 1-20.
31. Paulsson, J. & Ehrenberg, M. (2001) Q. Rev. Biophys. 34, 1-59.
32. Garcia-Ojalvo, J. & Sancho, J. M. (1999) Noise in Spatially Extended Systems (Springer, New York).
33. Welsh, D. K. & Reppert, S. M. (1996) Brain Res. 706, 30-36.
34. Schwartz, W. J., Gross, R. A. & Morton, M. T. (1987) Proc. Natl. Acad. Sci. USA 84, 1694-1698.
35. Liu, C. & Reppert, S. M. (2000) Neuron 25, 123-128.
36. Yamaguchi, S., Isejima, H., Matsuo, T., Okura, R., Yagita, K., Kobayashi, M. & Okamura, H. (2003) Science 302, 1408-1412.
37. Richard, P., Teusink, B., Hemker, B. B., van Dam, K. & Westerhoff, H. V. (1996) Yeast 12, 731-740.
38. Dano, S., Sorensen, P. G. & Hynne, F. (1999) Nature 402, 320-322.
39. Kuramoto, Y. (1984) Chemical Oscillations, Waves, and Turbulence (Springer, Berlin), pp. 62-67.
40. Ott, E., So, P., Barreto, E. & Antonsen, T. (2002) Physica D 173, 29-51.