메뉴 건너뛰기




Volumn 68, Issue 6, 2008, Pages 653-663

Transposition of a 600 thousand-year-old LTR retrotransposon in the model legume Lotus japonicus

Author keywords

Age and activity of retroelements; Lotus japonicus; LTR retrotransposon; Plant genome dynamics

Indexed keywords

PRIMER DNA;

EID: 54849430320     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-008-9397-2     Document Type: Article
Times cited : (23)

References (33)
  • 1
    • 0036021693 scopus 로고    scopus 로고
    • Mechanisms and rates of genome expansion and contraction in flowering plants
    • 10.1023/A:1016015913350
    • JL Bennetzen 2002 Mechanisms and rates of genome expansion and contraction in flowering plants Genetica 115 29 36 10.1023/A:1016015913350
    • (2002) Genetica , vol.115 , pp. 29-36
    • Bennetzen, J.L.1
  • 2
    • 0034086210 scopus 로고    scopus 로고
    • L1 (LINE-1) retrotransposon evolution and amplification in recent human history
    • S Boissinot P Chevret AV Furano 2000 L1 (LINE-1) retrotransposon evolution and amplification in recent human history Mol Biol Evol 17 915 928
    • (2000) Mol Biol Evol , vol.17 , pp. 915-928
    • Boissinot, S.1    Chevret, P.2    Furano, A.V.3
  • 3
    • 33748323138 scopus 로고    scopus 로고
    • Epigenetic regulation of the rice retrotransposon Tos17
    • 10.1007/s00438-006-0141-9
    • C Cheng M Daigen H Hirochika 2006 Epigenetic regulation of the rice retrotransposon Tos17 Mol Genet Genomics 276 378 390 10.1007/s00438-006-0141-9
    • (2006) Mol Genet Genomics , vol.276 , pp. 378-390
    • Cheng, C.1    Daigen, M.2    Hirochika, H.3
  • 4
    • 0029898690 scopus 로고    scopus 로고
    • Germ line-specific expression of intracisternal A-particle retrotransposons in transgenic mice
    • A Dupressoir T Heidmann 1996 Germ line-specific expression of intracisternal A-particle retrotransposons in transgenic mice Mol Cell Biol 16 4495 4503
    • (1996) Mol Cell Biol , vol.16 , pp. 4495-4503
    • Dupressoir, A.1    Heidmann, T.2
  • 5
    • 0038806480 scopus 로고    scopus 로고
    • Sperm cells of Zea mays have a complex complement of mRNAs
    • 10.1046/j.1365-313X.2003.01761.x
    • ML Engel A Chaboud C Dumas S McCormick 2003 Sperm cells of Zea mays have a complex complement of mRNAs Plant J 34 697 707 10.1046/j.1365-313X.2003.01761. x
    • (2003) Plant J , vol.34 , pp. 697-707
    • Engel, M.L.1    Chaboud, A.2    Dumas, C.3    McCormick, S.4
  • 7
    • 0032080772 scopus 로고    scopus 로고
    • Activation of plant retrotransposons under stress conditions
    • 10.1016/S1360-1385(98)01232-1
    • MA Grandbastien 2000 Activation of plant retrotransposons under stress conditions Trends Plant Sci 3 181 187 10.1016/S1360-1385(98)01232-1
    • (2000) Trends Plant Sci , vol.3 , pp. 181-187
    • Grandbastien, M.A.1
  • 8
    • 0024978849 scopus 로고
    • Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics
    • 10.1038/337376a0
    • MA Grandbastien A Spielmann M Caboche 1989 Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics Nature 337 376 380 10.1038/337376a0
    • (1989) Nature , vol.337 , pp. 376-380
    • Grandbastien, M.A.1    Spielmann, A.2    Caboche, M.3
  • 9
    • 0007411311 scopus 로고
    • Lotus japonicus, an autogamous, diploid legume species for classical and molecular genetics
    • 10.1111/j.1365-313X.1992.00487.x
    • L Handberg J Stougaard 1992 Lotus japonicus, an autogamous, diploid legume species for classical and molecular genetics Plant J 2 487 496 10.1111/j.1365-313X.1992.00487.x
    • (1992) Plant J , vol.2 , pp. 487-496
    • Handberg, L.1    Stougaard, J.2
  • 10
    • 0027168422 scopus 로고
    • Activation of tobacco retrotransposons during tissue culture
    • H Hirochika 1993 Activation of tobacco retrotransposons during tissue culture EMBO J 12 2521 2528
    • (1993) EMBO J , vol.12 , pp. 2521-2528
    • Hirochika, H.1
  • 11
    • 0029824259 scopus 로고    scopus 로고
    • Retrotransposons of rice involved in mutations induced by tissue culture
    • 10.1073/pnas.93.15.7783
    • H Hirochika K Sugimoto Y Otsuki H Tsugawa M Kanda 1996 Retrotransposons of rice involved in mutations induced by tissue culture Proc Natl Acad Sci USA 93 7783 7788 10.1073/pnas.93.15.7783
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 7783-7788
    • Hirochika, H.1    Sugimoto, K.2    Otsuki, Y.3    Tsugawa, H.4    Kanda, M.5
  • 12
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium. 10.1038/35057062
    • International Human Genome Sequencing Consortium 2001 Initial sequencing and analysis of the human genome Nature 409 860 921 10.1038/35057062
    • (2001) Nature , vol.409 , pp. 860-921
  • 13
    • 33745668459 scopus 로고    scopus 로고
    • Parent-dependent loss of gene silencing during interspecies hybridization
    • 10.1016/j.cub.2006.05.045
    • C Josefsson B Dilkes L Comai 2006 Parent-dependent loss of gene silencing during interspecies hybridization Curr Biol 16 1322 1328 10.1016/j.cub.2006.05. 045
    • (2006) Curr Biol , vol.16 , pp. 1322-1328
    • Josefsson, C.1    Dilkes, B.2    Comai, L.3
  • 14
    • 33644788375 scopus 로고    scopus 로고
    • Dedifferentiation of tobacco cells is associated with ribosomal RNA gene hypomethylation, increased transcription, and chromatin alterations
    • 10.1104/pp.105.061788
    • B Koukalova M Fojtova KY Lim J Fulnecek AR Leitch A Kovarik 2005 Dedifferentiation of tobacco cells is associated with ribosomal RNA gene hypomethylation, increased transcription, and chromatin alterations Plant Physiol 139 275 286 10.1104/pp.105.061788
    • (2005) Plant Physiol , vol.139 , pp. 275-286
    • Koukalova, B.1    Fojtova, M.2    Lim, K.Y.3    Fulnecek, J.4    Leitch, A.R.5    Kovarik, A.6
  • 15
    • 0035031406 scopus 로고    scopus 로고
    • A new gypsy-type retrotransposon, RIRE7: Preferential insertion into the tandem repeat sequence TrsD in pericentromeric heterochromatin regions of rice chromosomes
    • 10.1007/s004380000436
    • N Kumekawa N Ohmido K Fukui E Ohtsubo H Ohtsubo 2001 A new gypsy-type retrotransposon, RIRE7: preferential insertion into the tandem repeat sequence TrsD in pericentromeric heterochromatin regions of rice chromosomes Mol Genet Genomics 265 480 488 10.1007/s004380000436
    • (2001) Mol Genet Genomics , vol.265 , pp. 480-488
    • Kumekawa, N.1    Ohmido, N.2    Fukui, K.3    Ohtsubo, E.4    Ohtsubo, H.5
  • 16
    • 2342466982 scopus 로고    scopus 로고
    • Analyses of LTR-retrotransposon structures reveal recent and rapid genome loss in rice
    • 10.1101/gr.1466204
    • J Ma KM Devos JL Bennetzen 2004 Analyses of LTR-retrotransposon structures reveal recent and rapid genome loss in rice Genome Res 14 860 869 10.1101/gr.1466204
    • (2004) Genome Res , vol.14 , pp. 860-869
    • Ma, J.1    Devos, K.M.2    Bennetzen, J.L.3
  • 17
    • 0142104972 scopus 로고    scopus 로고
    • A receptor kinase gene of the LysM type is involved in legume perception of rhizobial signals
    • 10.1038/nature02045
    • EB Madsen LH Madsen S Radutoiu M Olbryt M Rakwalska K Szczyglowski 2003 A receptor kinase gene of the LysM type is involved in legume perception of rhizobial signals Nature 425 637 640 10.1038/nature02045
    • (2003) Nature , vol.425 , pp. 637-640
    • Madsen, E.B.1    Madsen, L.H.2    Radutoiu, S.3    Olbryt, M.4    Rakwalska, M.5    Szczyglowski, K.6
  • 18
    • 33644845346 scopus 로고    scopus 로고
    • LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus
    • 10.1111/j.1365-313X.2005.02534.x
    • LH Madsen E Fukai S Radutoiu CK Yost N Sandal L Schauser 2005 LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus Plant J 44 372 381 10.1111/j.1365-313X.2005.02534.x
    • (2005) Plant J , vol.44 , pp. 372-381
    • Madsen, L.H.1    Fukai, E.2    Radutoiu, S.3    Yost, C.K.4    Sandal, N.5    Schauser, L.6
  • 19
    • 27644537434 scopus 로고    scopus 로고
    • Transcriptional regulation of early transposon elements, an active family of mouse long terminal repeat retrotransposons
    • 10.1128/JVI.79.22.13865-13874.2005
    • IA Maksakova DL Mager 2005 Transcriptional regulation of early transposon elements, an active family of mouse long terminal repeat retrotransposons J Virol 79 13865 13874 10.1128/JVI.79.22.13865-13874.2005
    • (2005) J Virol , vol.79 , pp. 13865-13874
    • Maksakova, I.A.1    Mager, D.L.2
  • 20
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Mouse Genome Sequencing Consortium. 10.1038/nature01262
    • Mouse Genome Sequencing Consortium 2002 Initial sequencing and comparative analysis of the mouse genome Nature 420 520 562 10.1038/nature01262
    • (2002) Nature , vol.420 , pp. 520-562
  • 21
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • 10.1093/nar/8.19.4321
    • MG Murray WF Thompson 1980 Rapid isolation of high molecular weight plant DNA Nucleic Acids Res 8 4321 4325 10.1093/nar/8.19.4321
    • (1980) Nucleic Acids Res , vol.8 , pp. 4321-4325
    • Murray, M.G.1    Thompson, W.F.2
  • 22
    • 35448940971 scopus 로고    scopus 로고
    • Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.)
    • 10.1111/j.1365-313X.2007.03244.x
    • K Ohtsu MB Smith SJ Emrich LA Borsuk R Zhou T Chen 2007 Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.) Plant J 52 391 404 10.1111/j.1365-313X.2007.03244.x
    • (2007) Plant J , vol.52 , pp. 391-404
    • Ohtsu, K.1    Smith, M.B.2    Emrich, S.J.3    Borsuk, L.A.4    Zhou, R.5    Chen, T.6
  • 23
    • 0029853148 scopus 로고    scopus 로고
    • WWW-query: An on-line retrieval system for biological sequence banks
    • 10.1016/0300-9084(96)84768-7
    • G Perrière M Gouy 1996 WWW-query: an on-line retrieval system for biological sequence banks Biochimie 78 364 369 10.1016/0300-9084(96)84768-7
    • (1996) Biochimie , vol.78 , pp. 364-369
    • Perrière, G.1    Gouy, M.2
  • 24
    • 34548564136 scopus 로고    scopus 로고
    • Differential epigenetic regulation within an Arabidopsis retroposon family
    • 10.1534/genetics.107.071092
    • SH Rangwal EJ Richards 2007 Differential epigenetic regulation within an Arabidopsis retroposon family Genetics 176 151 160 10.1534/genetics.107.071092
    • (2007) Genetics , vol.176 , pp. 151-160
    • Rangwal, S.H.1    Richards, E.J.2
  • 25
    • 8744304935 scopus 로고    scopus 로고
    • An active murine transposon family pair: Retrotransposition of "master" MusD copies and ETn trans-mobilization
    • 10.1101/gr.2924904
    • D Ribet M Dewannieux T Heidmann 2004 An active murine transposon family pair: retrotransposition of "master" MusD copies and ETn trans-mobilization Genome Res 14 2261 2267 10.1101/gr.2924904
    • (2004) Genome Res , vol.14 , pp. 2261-2267
    • Ribet, D.1    Dewannieux, M.2    Heidmann, T.3
  • 27
    • 2442712340 scopus 로고    scopus 로고
    • Mining EST databases to resolve evolutionary events in major crop species
    • 10.1139/g04-047
    • JA Schlueter P Dixon C Granger D Grant L Clark JJ Doyle 2004 Mining EST databases to resolve evolutionary events in major crop species Genome 47 868 876 10.1139/g04-047
    • (2004) Genome , vol.47 , pp. 868-876
    • Schlueter, J.A.1    Dixon, P.2    Granger, C.3    Grant, D.4    Clark, L.5    Doyle, J.J.6
  • 28
    • 33646256347 scopus 로고    scopus 로고
    • Extensive individual variation in L1 retrotransposition capacity contributes to human genetic diversity
    • 10.1073/pnas.0601324103
    • MC Seleme MR Vetter R Cordaux L Bastone MA Batzer HH Kazazian Jr 2006 Extensive individual variation in L1 retrotransposition capacity contributes to human genetic diversity Proc Natl Acad Sci USA 103 6611 6616 10.1073/pnas.0601324103
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 6611-6616
    • Seleme, M.C.1    Vetter, M.R.2    Cordaux, R.3    Bastone, L.4    Batzer, M.A.5    Kazazian Jr., H.H.6
  • 29
    • 0037182899 scopus 로고    scopus 로고
    • A plant receptor-like kinase required for both bacterial and fungal symbiosis
    • 10.1038/nature00841
    • S Stacke C Kistner S Yoshida L Mulder S Sato T Kaneko 2002 A plant receptor-like kinase required for both bacterial and fungal symbiosis Nature 417 959 962 10.1038/nature00841
    • (2002) Nature , vol.417 , pp. 959-962
    • Stacke, S.1    Kistner, C.2    Yoshida, S.3    Mulder, L.4    Sato, S.5    Kaneko, T.6
  • 30
    • 0029257475 scopus 로고
    • The maize transposable element Ac is mobile in the legume Lotus japonicus
    • 10.1007/BF00037025
    • T Thykjaer J Stiller K Handberg J Jones J Stougaard 1995 The maize transposable element Ac is mobile in the legume Lotus japonicus Plant Mol Biol 27 981 993 10.1007/BF00037025
    • (1995) Plant Mol Biol , vol.27 , pp. 981-993
    • Thykjaer, T.1    Stiller, J.2    Handberg, K.3    Jones, J.4    Stougaard, J.5
  • 31
    • 33845186134 scopus 로고    scopus 로고
    • Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution
    • 10.1073/pnas.0605618103
    • C Vitte JL Bennetzen 2006 Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution Proc Natl Acad Sci USA 103 17638 17643 10.1073/pnas.0605618103
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 17638-17643
    • Vitte, C.1    Bennetzen, J.L.2
  • 32
    • 34547740136 scopus 로고    scopus 로고
    • LTR retrotransposons in rice (Oryza sativa, L.): Recent burst amplifications followed by rapid DNA loss
    • 10.1186/1471-2164-8-218
    • C Vitte O Panaud H Quesneville 2007 LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss BMC Genomics 8 218 10.1186/1471-2164-8-218
    • (2007) BMC Genomics , vol.8 , pp. 218
    • Vitte, C.1    Panaud, O.2    Quesneville, H.3
  • 33
    • 0034858093 scopus 로고    scopus 로고
    • Reverse transcription of retroviruses and LTR retrotransposons
    • 10.1007/PL00000937
    • M Wilhelm FX Wilhelm 2002 Reverse transcription of retroviruses and LTR retrotransposons Cell Mol Life Sci 58 1246 1262 10.1007/PL00000937
    • (2002) Cell Mol Life Sci , vol.58 , pp. 1246-1262
    • Wilhelm, M.1    Wilhelm, F.X.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.