Characterisation of lettuce virus X, a new potexvirus infecting lettuce in Iran

Archives of Virology

Volumn 153, Issue 10, 2008, Pages 1867-1875

  Dizadji, A ^a   Koohi Habibi, M ^a   Izadpanah, K ^b   Dietrich, C ^c   Mossahebi, G H ^a   Winter, S ^c  

^a UNIVERSITY OF TEHRAN   (Iran)

^b SHIRAZ UNIVERSITY   (Iran)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ARTICLE; CHEMISTRY; COMPARATIVE STUDY; DNA SEQUENCE; GENE ORDER; GENETICS; IRAN; ISOLATION AND PURIFICATION; LETTUCE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PATHOGENICITY; PHYLOGENY; POTEXVIRUS; SEQUENCE HOMOLOGY; TRANSMISSION ELECTRON MICROSCOPY; ULTRASTRUCTURE; VIRION; VIROLOGY; VIRUS GENOME; VIRUS INFECTION;

GENE ORDER; GENOME, VIRAL; IRAN; LETTUCE; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; PHYLOGENY; POTEXVIRUS; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; VIRION; VIRUS DISEASES;

ALSTROEMERIA; ALSTROEMERIA VIRUS X; ASPARAGUS; LACTUCA; NARCISSUS; NARCISSUS MOSAIC VIRUS; POTEXVIRUS;

EID: 53849148905     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-008-0191-x     Document Type: Article

References (38)

1. MJ Adams JF Antoniw M Bar-Joseph AA Brunt T Candresse GD Foster GP Martelli RG Milne CM Fauquet 2004 The new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation Arch Virol 149 1045 1060
2. Ball EM, De Boer SH, Schaad NW (1990) Polyclonal antibodies. In: Hampton RO, Ball EM, De Boer SH (eds) Serological methods for detection and identification of viral and bacterial plant pathogens. APS Press, St. Paul, pp 33-54
3. MF Clark AN Adams 1977 Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses J Gen Virol 34 475 483
4. AC Cotillon M Girard S Ducouret 2002 Complete nucleotide sequence of the genomic RNA of a French isolate of Pepino mosaic virus (PepMV) Arch Virol 147 2231 2238
5. BA Coutts ML Thomas-Carroll RAC Jones 2004 Analysing spatial patterns of spread of lettuce necrotic yellows virus and lettuce big-vein disease in lettuce field plantings Ann Appl Biol 145 339 343
6. VV Dolja VP Boyko AA Agranovsky EV Koonin 1991 Phylogeny of the capsid proteins of rod-shaped and filamentous RNA plant viruses: two families with distinct patterns of sequence and probably structure conservation Virology 184 79 86
7. JJ English GF Davenport T Elmayan H Vaucheret DC Baulcombe 1997 Requirement of sense transcription for homology-dependent virus resistance and trans-inactivation Plant J 12 597 603
8. JW Erickson JB Bancroft 1978 The self-assembly of papaya mosaic virus Virology 90 36 46
9. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791
10. S Fuji K Shinoda M Ikeda H Furuya H Naito F Fukumoto 2005 Complete nucleotide sequence of the new potexvirus "Alstroemeria virus X" Arch Virol 150 2377 2385
11. PJ Guilford DL Beck RLS Foster 1991 Influence of the poly(A) tail and putative polyadenylation signal on the infectivity of white clover mosaic potexvirus Virology 182 61 67
12. RP Hellens EA Edwards NR Leyland S Bean PM Mullineaux 2000 pGreen: a versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation Plant Mol Biol 6 819 832
13. MJ Huisman HJM Linthorst JF Bol BJC Cornelissen 1988 The complete nucleotide sequence of potato virus X and its homologies at the amino acid level with various plus-stranded RNA viruses J Gen Virol 69 1789 1798
14. G Kadaré AL Haenni 1997 Virus-encoded RNA helicases J Virol 71 2583 2590
15. G Kamer P Argos 1984 Primary structural comparison of RNA-dependent RNA polymerases from plant, animal and bacterial viruses Nucl Acid Res 12 7269 7282
16. JD Kim KY Koo MU Chang 1998 Genome characterization of a Korean isolate of Cymbidium mosaic virus Mol Cells 8 181 188
17. R Krause-Sakate O Le Gall H Fakhfah M Peypelut M Marrakchi 2002 Molecular and biological characterization of Lettuce mosaic virus (LMV) isolates reveals a distinct and widespread type of resistance-breaking isolate: LMV-Most Phytopathology 92 563 572
18. UK Laemmli 1970 Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227 680 685
19. Y-I Li TW Shih Y-H Hsu Y-T Han Y-L Huang M Meng 2001 The helicase-like domain of plant potexvirus replicase participates in formation of RNA 5′ cap structure by exhibiting RNA 5′-triphosphatase activity J Virol 75 12114 12120
20. J Memelink CI van der Vlugt HJ Linthorst AF Derks CJ Asjes JF Bol 1990 Homologies between the genomes of a carlavirus (lily symptomless virus) and a potexvirus (lily virus X) from lily plants J Gen Virol 71 917 924
21. Milne R, Luisoni E (1977) Rapid immune electron microscopy of virus preparations. In: Maramorosch K, Koprowski H (eds) Methods in virology, vol 6. Academic Press, New York, pp 265-281
22. A Moreno C De Blas R Biurrun M Nebreda I Palacios M Duque A Fereres 2004 The incidence and distribution of viruses infecting lettuce, cultivated Brassica and associated natural vegetation in Spain Ann Appl Biol 144 339 346
23. RA Mumford EJ Metcalfe 2001 The partial sequencing of the genomic RNA of a UK isolate of Pepino mosaic virus and the comparison of the coat protein sequence with other isolates from Europe and Peru Arch Virol 146 2455 2460
24. Natwick ET, Chaney WE, Toscano NC, Koike ST, Davis RM, Westerdahl BB, Cudney DW, Bell CE, Smith RF, Lanini WT, Le Strange M, Fennimore SA, Bendixen WE (2002) UC IPM Pest Management Guidelines: Lettuce. Agriculture and Natural Resources Publication No. 3450. University of California, USA
25. JA Navarro F Botella A Marhuenda P Sastre MA Sánchez-Pina V Pallas 2005 Identification and partial characterisation of Lettuce big-vein associated virus and Mirafiori lettuce big-vein virus in common weeds found amongst Spanish lettuce crops and their role in lettuce big-vein disease transmission Eur J Plant Pathol 113 25 34
26. RDM Page 1996 TREEVIEW: an application to display phylogenetic trees on personal computers Comput Appl Biosci 12 357 358
27. C Porta GP Lomonossoff 2002 Viruses as vectors for the expression of foreign sequences in plants Biotechnol Genet Eng Rev 19 245 291
28. F Revers H Lot S Souche O Le Gall T Candresse J Dunez 1997 Biological and molecular variability of lettuce mosaic virus isolates Phytopathology 87 397 403
29. MN Rozanov EV Koonin AE Gorbalenya 1992 Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses J Gen Virol 73 2129 2134
30. N Saitou M Nei 1987 The neighbour-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
31. P Soleimani GH Mossahebi M Koohi-Habibi J Zad S Hosseini-Farhangi 2004 Occurrence and distribution of lettuce mosaic disease in Tehran province from Iran Commun Agric Appl Biol Sci 69 513 517
32. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
33. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice Nucl Acid Res 22 4673 4680
34. H Towbin T Staehelin J Gordon 1979 Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications Proc Natl Acad Sci USA 76 4350 4354
35. K Uhde R Fischer U Commandeur 2005 Expression of multiple foreign epitopes presented as synthetic antigens on the surface of potato virus X particles Arch Virol 150 327 340
36. KA White JB Bancroft GA Mackie 1992 Mutagenesis of a hexanucleotide sequence conserved in potexvirus RNAs Virology 189 817 820
37. SM Wong PH Mahtani KC Lee HH Yu KK Neo Y Chan M Wu CG Chang 1997 Cymbidium mosaic potexvirus RNA: complete nucleotide sequence and phylogenetic analysis Arch Virol 142 383 391
38. HH Yu SM Wong 1998 Synthesis of biologically active cDNA clones of cymbidium mosaic potexvirus using a population cloning strategy Arch Virol 143 1617 1620