Cymbidium mosaic potexvirus RNA: Complete nucleotide sequence and phylogenetic analysis

Archives of Virology

Volumn 142, Issue 2, 1997, Pages 383-391

  Wong, S M ^a   Mahtani, P H ^a   Lee, K C ^a   Yu, H H ^a   Tan, Y ^a   Neo, K K ^a   Chan, Y ^a   Wu, M ^a   Chng, C G ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT; POTEXVIRUS; VIROLOGY; VIRUS GENOME;

AMINO ACID SEQUENCE; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PLANTS; POTEXVIRUS; RNA, VIRAL;

CYMBIDIUM; CYMBIDIUM MOSAIC VIRUS; NARCISSUS MOSAIC VIRUS; POTATO AUCUBA MOSAIC VIRUS; POTEXVIRUS; STRAWBERRY MILD YELLOW EDGE VIRUS;

EID: 0031058791     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007050050084     Document Type: Article

References (33)

1. Abouhaidar MG (1988) Nucleotide sequence of the capsid protein gene and 3′ non coding region of papaya mosaic virus RNA. J Gen Virol 69: 219-226
2. Atabekov JG (1995) Potexvirus. In: Murphy FA, Fauquet CM, Bishop DHL, Ghabrial SA, Martelli GP, Mayo MA, Summers MD (eds) Virus Taxonomy. Classification and Nomenclature of Viruses. Sixth Report of the International Committee on Taxonomy of Viruses. Springer, Wien New York, pp 479-482 (Arch Virol [Suppl.] 10).
3. Bancroft JB, Rouleau M, Johnston R, Prins L, Mackie GA (1991) The entire nucleotide sequence of foxtail mosaic virus RNA. J Gen Virol 72: 2173-2181
4. Brannigan MD (1983) Strain differentiation of cymbidium mosaic virus. M.S. Thesis, University of Maryland
5. Chia TF, Chan YS, Chua NH (1992) Characterization of cymbidium mosaic virus coat protein gene and its expression in transgenic tobacco plants. Plant Mol Biol 18: 1091-1099
6. Ding S, Keese P, Gibbs A (1989) Nucleotide sequence of ononis yellow mosaic tymovirus genome. Virology 172: 555-563
7. Dolja VV, Boyko VP, Agranovsky AA, Koonin EV (1991) Phylogeny of the capsid proteins of rod-shaped and filamentous RNA plant viruses: two families with distinct patterns of sequence and probably structure conservation. Virology 184: 79-86
8. Felsenstein J (1995) PHYLIP (Phylogenetic Inference Package) Version 3.57c. Department of Genetics, University of Washington, Seattle
9. Florentz Z, Brigand JP, Romby P, Horth L, Ebel SP, Geiger R (1982) The tRNA-like structure of turnip yellow mosaic virus RNA: structure and organisation of the last 159 nucleotides from 3'OH terminus. EMBOJ 1: 269-276
10. Forster RLS, Bevan MW, Harbison SA, Gardner RL (1988) The complete nucleotide sequence of the potexvirus white clover mosaic virus. Nucleic Acids Res 16: 291-303
11. Frowd JA, Tremaine JH (1977) Physical, chemical, and serological properties of cymbidium mosaic virus. Phytopathology 67: 43-49
12. Habili N, Symons RH (1989) Evolutionary relationships between luteoviruses and other RNA plant viruses based on sequence motifs in their putative RNA polymerase and nucleic acid helicases. Nucleic Acids Res 17: 9543-9555
13. Jelkmann W, Maiss E, Martin R (1992) The nucleotide sequence and genome organisation of strawberry mild yellow edge-associated potexvirus. J Gen Virol 73: 475-479
14. Jensen DD (1951) Mosaic or black streak disease of Cymbidium orchids. Phytopathology 41: 401-414
15. Koenig R, Lesemann DE (1978) Potexvirus group. CMI/AAB Descriptions of Plant Viruses, No. 200
16. Koenig R, Torrance L (1986) Antigenic analysis of potato virus X by means of monoclonal antibodies. J Gen Virol 67: 2145-2151
17. Koonin EV, Dolja VV (1993) Evolution and taxonomy of positive strand RNA viruses: Implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28: 375-430
18. Lin NS, Lin BY, Lo NW, Hu CC, Chow TY, Hsu YH (1994) Nucleotide sequence of the genomic RNA of bamboo mosaic potexvirus. J Gen Virol 75: 2513-2518
19. Memelink J, Van der Vlugt CI, Linthorst HJ, Derks AFL, Asjes CJ, Bol JF (1990) Homologies between the genomes of a carlavirus (lily symptomless virus) and a potexvirus (lily virus X) from lily plants. J Gen Virol 71: 917-924
20. Neo KK, Wong SM, Wu M (1992) Nucleotide sequence of two ORFs upstream to the coat protein gene cymbidium mosaic virus. Plant Mol Biol 18: 1027-1029
21. Neo KK, Wong SM, Wu M (1993) Nucleotide sequence and in vitro translation of the coat protein gene of cymbidium mosaic virus. Virus Genes 7: 157-170
22. Rozanov MN, Koonin EV, Gorbalenya AE (1992) Conservation of the putative methyltransferase domain: a hallmark of the Sindbis-like supergroup of positive-strand RNA viruses. J Gen Virol 73: 2129-2134
23. Ryu KH, Yoon KE, Park WM (1995) Cloning and sequencing of a cDNA encoding the coat protein of a Korean isolate of cymbidium mosaic virus. Gene 156: 303-304
24. Sawyer L, Tollin P, Wilson HR (1987) A comparison between the predicted secondary structures of potato virus X and papaya mosaic virus coat proteins. J Gen Virol 68: 1229-1232
25. Sit TL, Abouhaidar MG, Holy S (1989) Nucleotide sequence of papaya mosaic virus RNA. J Gen Virol 70: 2325-2331
26. Sit TL, White KA, Holy S, Padmanabhan V, Mohamed E, Hiebert M, Mackie GA, Abouhaidar MG (1990) Complete nucleotide sequence of clover yellow mosaic virus RNA. J Gen Virol 71: 1913-1920
27. Skryabin KG, Kraev AS, Morozov SYu, Rosanov MN, Chernov BK, Lukasheva LI, Atabekov JG (1988) The nucleotide sequence of potato virus X RNA. Nucleic Acids Res 16: 10929-10930
28. Skryabin KG, Kraev AS, Morozov SYu, Rozanov MN, Chernov BK, Lukasheva LI, Atabekov JG (1989) Conserved and variable elements in RNA genomes of potexviruses. FEBS Lett 240: 33-40
29. Solovyer AG, Novikov VK, Mertis A, Savenkov EI, Zelenina DA, Tyulkina LG, Morozov SYu (1994) Genome characterization and taxonomy of plantago asiatica mosaic potexvirus. J Gen Virol 75: 259-267
30. White KA, Bancroft JB, Mackie GA (1992) Mutagenesis of a hexanucleotide sequence conserved in potexvirus RNAs. Virology 189: 817-820
31. Wong SM, Chng CG, Lee YH, Tan K, Zettler FW (1994) Incidence of cymbidium mosaic and odontoglossum ringspot viruses and their significance in orchid cultivation in Singapore. Crop Protect 13: 235-239
32. Xu H, Leclerc D, Leung B, Abouhaidar MG (1994) The entire nucleotide sequence and genomic organisation of potato acuba mosaic potexvirus. Arch Virol 135: 461-469
33. Zuidema D, Linthorst HJM, Huisman MJ, Asjes CJ, Bol JF (1989) Nucleotide sequence of narcissus mosaic virus RNA. J Gen Virol 70: 267-276