Biological and molecular variability of lettuce mosaic virus isolates

Phytopathology

Volumn 87, Issue 4, 1997, Pages 397-403

  Revers, F ^a   Lot, H ^a   Souche, S ^a   Le Gall, O ^a   Candresse, T ^a   Dunez, J ^a  

^a INRA   (France)

Author keywords

[No Author keywords available]

Indexed keywords

LACTUCA; LACTUCA SATIVA; LETTUCE MOSAIC VIRUS; POTYVIRUS;

EID: 0031000668     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO.1997.87.4.397     Document Type: Article

References (42)

1. Atreya, P. L., Atreya, C. D., and Pirone, T. P. 1991. Amino acid substitutions in the coat protein result in loss of insect transmissibility of a plant virus. Proc. Natl. Acad. Sci. USA 88:7887-7891.
2. Bateson, M. F., Henderson, J., Chaleeprom, W., Gibbs, A. J., and Dale, J. L. 1994. Papaya ringspot potyvirus: Isolate variability and the origin of PRSV type P (Australia). J. Gen. Virol. 75:3547-3553.
3. 3 gene mediated resistance against the tobamoviruses is elicited by the coal protein. Virology 209:498-505.
4. Bos, L., Huijberts, N., and Cuperus, C. 1994. Further observations on variation of lettuce mosaic virus in relation to lettuce (Lactuca sativa), and a discussion of resistance terminology. Eur. J. Plant Pathol. 100:293-314.
5. Cervera, M. T., Riechmann, J. L., Martin, M. T., and Garcia, J. A. 1993. 3′-terminal sequence of the plum pox virus PS and ó6 isolates: Evidence for RNA recombination within the potyvirus group. J. Gen. Virol. 74: 329-334.
6. Desbiez, C., Wipf-Scheibel, C., Granier, C., Robaglia, C., Delaunay, C., and Lecoq, H. 1996. Biological and molecular variability of zucchini yellow mosaic virus on the Island of Martinique. Plant Dis. 80:203-207.
7. Dinant, S., and Lot, H. 1992. Lettuce mosaic virus: A review. Plant Pathol. 41:528-542.
8. Dinant, S., Lot, H., Alborey, J., Kusiak, L., Meyer, M., and Astier-Manifacier, S. 1991. Nucleotide sequence of the 3′ terminal region of lettuce mosaic potyvirus RNA shows a Gln/Val dipeptide at the cleavage site between the polymerase and the coat protein genes. Arch. Virol. 116:235-252.
9. Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
10. Felsenstein, J. 1989. PHYLIP-Phylogeny Inference Package. (version 3.2). Cladistics 5:164-166.
11. Frenkel, M. J., Jilka, J. M., McKern, N. M., Strike, P. M., Clark, J. M., Jr., Shukla, D. D., and Ward, C. W. 1991. Unexpected sequence diversity in the amino-terminal ends of the coat proteins of strains of sugarcane mosaic virus. J. Gen. Virol. 72:237-242.
12. Frenkel, M. J., Ward, C. W., and Shukla, D. D. 1989. The use of 3′ noncoding nucleotide sequences in the taxonomy of potyviruses: Application to watermelon mosaic virus 2 and soybean mosaic virus-N. J. Gen. Virol. 70:2775-2783.
13. Hellman, G. M., Thombury, D. W., and Pirone, T. P. 1990. Molecular analysis of tobacco vein mottling virus (TVMV) pathogenicity by infectious transcripts of chimeric potyviral cDNA genomes. (Abstr.) Phytopathology 80:1036.
14. Higgins, D. G., Bleasby, A. J., and Fuchs, R. 1992. CLUSTAL V: Improved software for multiple sequence alignment. Comput. Appl. Biosci. 8:189-191.
15. Hultman, T., Ståhl, S., Hornes, E., and Uhlén, M. 1989. Direct solid phase sequencing of genomic and plasmid DNA using magnetic beads as solid support. Nucleic Acids Res. 17:4937-4946.
16. Jarayam, C., Hill, J. H., and Miller, W. A. 1992. Complete nucleotide sequences of two soybean mosaic virus strains differentiated by response of soybean containing the Rsv resistance gene. J. Gen. Virol. 73:2067-2077.
17. Kavanagh, T., Goulden, M., Santa Cruz, S., Chapman, S., Barker, I., and Baulcombe, D. 1992. Molecular analysis of a resistance breaking strain of potato virus X. Virology 189:609-617.
18. Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequence. J. Mol. Evol. 16:111-120.
19. Knorr, D. A., and Dawson, W. O. 1988. A point mutation in the tobacco mosaic virus capsid protein gene induces hypersensitivity in Nicotiana sylvestris. Proc. Natl. Acad. Sci. USA 85:170-174.
20. Lot, H., and Deogratias, J. M. 1991. Le virus de la mosaique de la laitue: Variabilité et sources de résistance. Page 74 in: Abstracts of the Troisièmes Rencontres de Virologie Végétale. CNRS/INRA, Aunois, France.
21. Meshi, T., Motoyoshi, F., Adachi, A., Watanabe, Y., Takamatsu, N., and Okada, Y. 1988. Two concomitant base substitutions in the putative replicase genes of tobacco mosaic virus confer the ability to overcome the effects of a tomato resistance gene, Tm-1. EMBO 7:1575-1581.
22. Meshi, T., Motoyoshi, F., Maeda, T., Yoshiwoka, S., Watanabe, Y., and Okada, Y. 1989. Mutations in the tobacco mosaic virus 30-kD protein gene overcome Tm-2 resistance in tomato. Plant Cell 1:515-522.
23. Padgett, H. S., and Beachy, R. N. 1993. Analysis of a tobacco mosaic virus strain capable of overcoming N gene-mediated resistance. Plant Cell 5:577-586.
24. Pink, D. A. C., Kostova, D., and Walkey, D. G. A. 1992. Differentiation of pathotypes of lettuce mosaic virus. Plant Pathol. 41:5-12.
25. Pink, D. A. C., Lot, H., and Johnson, R. 1992. Novel pathotypes of lettuce mosaic virus - Breakdown of a durable resistance. Euphytica 63:169-174.
26. Revers, F., Le Gall, O., Candresse, T., Le Romancer, M., and Dunez, J. 1996. Frequent occurrence of recombinant potyvirus isolates. J. Gen. Virol. 77:1953-1965.
27. Revers, F., Yang, S. J., Walter, J., Souche, S., Lot, H., Le Gall, O., Candresse, T., and Dunez, J. Comparison of the complete nucleotide sequences of two isolates of lettuce mosaic virus differing in their biological properties. Virus Res. In press.
28. Saito, T., Meshi, T., Takamatsu, N., and Okada, Y. 1987. Coat protein gene sequence of tobacco mosaic virus encodes a host response determinant. Proc. Natl. Acad. Sci. USA 84:6074-6077.
29. Saitou, N., and Nei, M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
30. Sáiz, M., Dopazo, J., Castro, S., and Romero, J. 1994. Evolutionary relationships among bean common mosaic virus strains and closely related potyviruses. Virus Res. 31:39-48.
31. Santa Cruz, S., and Baulcombe, D. 1993. Molecular analysis of potato virus X isolates in relation to the potato hypersensitivity gene Nx. Mol. Plant-Microbe Interact. 6:707-714.
32. Shukla, D. D., Frenkel, M. J., and Ward, C. W. 1991. Structure and function of the potyvirus genome with special reference to the coat protein coding region. Can. J. Plant Pathol. 13:189-191.
33. Shukla, D. D., and Ward, C. W. 1988. Amino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group. J. Gen. Virol. 69:2703-2710.
34. Shukla, D. D., and Ward, C. W. 1989. Structure of potyvirus coat proteins and its application in the taxonomy of the potyvirus group. Adv. Virus Res. 36:273-314.
35. Shukla, D. D., and Ward, C. W. 1989. Identification and classification of potyviruses on the basis of coat protein sequence data and serology. Arch. Virol. 106:171-200.
36. Sudarsono, Woloshuk, S. L., Xiong, Z., Hellmann, G. M., Wernsman, E. A., Weissinger, A. K., and Lommel, S. A. 1993. Nucleotide sequence of the capsid protein cistrons from six potato virus Y (PVY) isolates infecting tobacco. Arch. Virol. 132:161-170.
37. Van der Vlugt, R. A. A., Leunissen, J., and Goldbach, R. 1993. Taxonomic relationships between distinct potato virus Y isolates based on detailed comparisons of the viral coat proteins and 3′ nontranslated regions. Arch. Virol. 131:361-375.
38. Wang, C. H., Bau, H. J., and Yeh, S. D. 1994. Comparison of the nuclear inclusion b protein and coat protein genes of five papaya ringspot virus strains distinct in geographic origin and pathogenicity. Phytopathology 84:1205-1210.
39. 2 resistance gene in the tomato. J. Virol. 67:6432-6438.
40. Wetzel, T., Candresse, T., Macquaire, G., Ravelonandro, M., and Dunez, J. 1992. A highly sensitive immunocapture polymerase chain reaction method for plum pox potyvirus detection. J. Virol. Methods 39:27-37.
41. Zagurski, R. J., Baumeister, K., Lomax, N., and Berman, M. L. 1985. Rapid and easy sequencing of large linear double-stranded DNA and super-coiled plasmid DNA. Gene Anal. Tech. 2:89-94.
42. Zerbini, F. M., Koike, S. T., and Gilbertson, R. L. 1995. Biological and molecular characterization of lettuce mosaic potyvirus isolates from the Salinas Valley of California. Phytopathology 85:746-752.