메뉴 건너뛰기




Volumn 70, Issue 3, 2008, Pages 623-633

Archaeal RNA polymerase subunits e and F are not required for transcription in vitro, but a thermococcus kodakarensis mutant lacking subunit F is temperature-sensitive

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONIN; RNA POLYMERASE;

EID: 53849145660     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2008.06430.x     Document Type: Article
Times cited : (41)

References (43)
  • 1
    • 0037495037 scopus 로고    scopus 로고
    • Architecture of initiation-competent 12-subunit RNA polymerase II
    • Armache, K.J., Kettenberger, H. Cramer, P. (2003) Architecture of initiation-competent 12-subunit RNA polymerase II. Proc Natl Acad Sci USA 100 : 6964 6968.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 6964-6968
    • Armache, K.J.1    Kettenberger, H.2    Cramer, P.3
  • 2
    • 8444239349 scopus 로고    scopus 로고
    • Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1
    • Atomi, H., Fukui, T., Kanai, T., Morikawa, M. Imanaka, T. (2004) Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1. Archaea 1 : 263 267.
    • (2004) Archaea , vol.1 , pp. 263-267
    • Atomi, H.1    Fukui, T.2    Kanai, T.3    Morikawa, M.4    Imanaka, T.5
  • 3
    • 0032102006 scopus 로고    scopus 로고
    • Transcription and translation in Archaea: A mosaic of eukaryal and bacterial features
    • Bell, S.D. Jackson, S.P. (1998) Transcription and translation in Archaea: a mosaic of eukaryal and bacterial features. Trends Microbiol 6 : 222 228.
    • (1998) Trends Microbiol , vol.6 , pp. 222-228
    • Bell, S.D.1    Jackson, S.P.2
  • 4
    • 0034745386 scopus 로고    scopus 로고
    • The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition
    • Bell, S.D., Brinkman, A.B., van der Oost, J. Jackson, S.P. (2001) The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition. EMBO Rep 2 : 133 138.
    • (2001) EMBO Rep , vol.2 , pp. 133-138
    • Bell, S.D.1    Brinkman, A.B.2    Van Der Oost, J.3    Jackson, S.P.4
  • 5
    • 0037832543 scopus 로고    scopus 로고
    • Complete, 12-subunit RNA polymerase II at 4.1-Å resolution: Implications for the initiation of transcription
    • Bushnell, D.A. Kornberg, R.D. (2003) Complete, 12-subunit RNA polymerase II at 4.1-Å resolution: implications for the initiation of transcription. Proc Natl Acad Sci USA 100 : 6969 6973.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 6969-6973
    • Bushnell, D.A.1    Kornberg, R.D.2
  • 6
    • 0027379051 scopus 로고
    • A portion of RNA polymerase II molecules has a component essential for stress responses and stress survival
    • Choder, M. Young, R.A. (1993) A portion of RNA polymerase II molecules has a component essential for stress responses and stress survival. Mol Cell Biol 13 : 6984 6991.
    • (1993) Mol Cell Biol , vol.13 , pp. 6984-6991
    • Choder, M.1    Young, R.A.2
  • 8
    • 0025962218 scopus 로고
    • Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro
    • Edwards, A.M., Kane, C.M., Young, R.A. Kornberg, R.D. (1991) Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro. J Biol Chem 266 : 71 75.
    • (1991) J Biol Chem , vol.266 , pp. 71-75
    • Edwards, A.M.1    Kane, C.M.2    Young, R.A.3    Kornberg, R.D.4
  • 9
    • 33947369108 scopus 로고    scopus 로고
    • Insights into transcription initiation and termination from the electron microscopy structure of yeast RNA polymerase III
    • Fernandez-Tornero, C., Bottcher, B., Riva, M., Carles, C., Steuerwald, U., Ruigrok, R.W., et al. (2007) Insights into transcription initiation and termination from the electron microscopy structure of yeast RNA polymerase III. Mol Cell 25 : 813 823.
    • (2007) Mol Cell , vol.25 , pp. 813-823
    • Fernandez-Tornero, C.1    Bottcher, B.2    Riva, M.3    Carles, C.4    Steuerwald, U.5    Ruigrok, R.W.6
  • 10
    • 13544250517 scopus 로고    scopus 로고
    • Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes
    • Fukui, T., Atomi, H., Kanai, T., Matsumi, R., Fujiwara, S. Imanaka, T. (2005) Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res 15 : 352 363.
    • (2005) Genome Res , vol.15 , pp. 352-363
    • Fukui, T.1    Atomi, H.2    Kanai, T.3    Matsumi, R.4    Fujiwara, S.5    Imanaka, T.6
  • 11
    • 37249018447 scopus 로고    scopus 로고
    • Transcription factor e is a part of transcription elongation complexes
    • Grunberg, S., Bartlett, M.S., Naji, S. Thomm, M. (2007) Transcription factor E is a part of transcription elongation complexes. J Biol Chem 282 : 35482 35490.
    • (2007) J Biol Chem , vol.282 , pp. 35482-35490
    • Grunberg, S.1    Bartlett, M.S.2    Naji, S.3    Thomm, M.4
  • 12
    • 0035116309 scopus 로고    scopus 로고
    • TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEalpha
    • Hanzelka, B.L., Darcy, T.J. Reeve, J.N. (2001) TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEalpha. J Bacteriol 183 : 1813 1818.
    • (2001) J Bacteriol , vol.183 , pp. 1813-1818
    • Hanzelka, B.L.1    Darcy, T.J.2    Reeve, J.N.3
  • 13
    • 39149142997 scopus 로고    scopus 로고
    • The X-ray crystal structure of RNA polymerase from Archaea
    • Hirata, A., Klein, B.J. Murakami, K.S. (2008) The X-ray crystal structure of RNA polymerase from Archaea. Nature 451 : 851 854.
    • (2008) Nature , vol.451 , pp. 851-854
    • Hirata, A.1    Klein, B.J.2    Murakami, K.S.3
  • 14
    • 0034812522 scopus 로고    scopus 로고
    • Two kinds of archaeal chaperonin with different temperature dependency from a hyperthermophile
    • Izumi, M., Fujiwara, S., Takagi, M., Fukui, K. Imanaka, T. (2001) Two kinds of archaeal chaperonin with different temperature dependency from a hyperthermophile. Biochem Biophys Res Commun 280 : 581 587.
    • (2001) Biochem Biophys Res Commun , vol.280 , pp. 581-587
    • Izumi, M.1    Fujiwara, S.2    Takagi, M.3    Fukui, K.4    Imanaka, T.5
  • 15
    • 33745499068 scopus 로고    scopus 로고
    • Structural biology of RNA polymerase III: Subcomplex C17/25, X-ray structure and 11 subunit enzyme model
    • Jasiak, A.J., Armache, K.J., Martens, B., Jansen, R.P. Cramer, P. (2006) Structural biology of RNA polymerase III: subcomplex C17/25, X-ray structure and 11 subunit enzyme model. Mol Cell 23 : 71 81.
    • (2006) Mol Cell , vol.23 , pp. 71-81
    • Jasiak, A.J.1    Armache, K.J.2    Martens, B.3    Jansen, R.P.4    Cramer, P.5
  • 16
    • 36348974664 scopus 로고    scopus 로고
    • A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes
    • Kanai, T., Akerboom, J., Takedomi, S., van de Werken, H.J., Blombach, F., van der Oost, J., et al. (2007) A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes. J Biol Chem 282 : 33659 33670.
    • (2007) J Biol Chem , vol.282 , pp. 33659-33670
    • Kanai, T.1    Akerboom, J.2    Takedomi, S.3    Van De Werken, H.J.4    Blombach, F.5    Van Der Oost, J.6
  • 17
    • 0035355210 scopus 로고    scopus 로고
    • The RNA polymerase III transcription initiation factor TFIIIB participates in two steps of promoter opening
    • Kassavetis, G.A., Letts, G.A. Geiduschek, E.P. (2001) The RNA polymerase III transcription initiation factor TFIIIB participates in two steps of promoter opening. EMBO J 20 : 2823 2834.
    • (2001) EMBO J , vol.20 , pp. 2823-2834
    • Kassavetis, G.A.1    Letts, G.A.2    Geiduschek, E.P.3
  • 18
    • 0037056013 scopus 로고    scopus 로고
    • Yarrowia lipolytica, a yeast genetic system to study mitochondrial complex i
    • Kerscher, S., Drose, S., Zwicker, K., Zickermann, V. Brandt, U. (2002) Yarrowia lipolytica, a yeast genetic system to study mitochondrial complex I. Biochim Biophys Acta 1555 : 83 91.
    • (2002) Biochim Biophys Acta , vol.1555 , pp. 83-91
    • Kerscher, S.1    Drose, S.2    Zwicker, K.3    Zickermann, V.4    Brandt, U.5
  • 20
    • 42649112370 scopus 로고    scopus 로고
    • Early evolution of eukaryotic DNA-dependent RNA polymerases
    • Kwapisz, M., Beckouet, F. Thuriaux, P. (2008) Early evolution of eukaryotic DNA-dependent RNA polymerases. Trends Genet 24 : 211 215.
    • (2008) Trends Genet , vol.24 , pp. 211-215
    • Kwapisz, M.1    Beckouet, F.2    Thuriaux, P.3
  • 21
    • 3142733093 scopus 로고    scopus 로고
    • Transcriptional fidelity and proofreading in Archaea and implications for the mechanism of TFS-induced RNA cleavage
    • Lange, U. Hausner, W. (2004) Transcriptional fidelity and proofreading in Archaea and implications for the mechanism of TFS-induced RNA cleavage. Mol Microbiol 52 : 1133 1143.
    • (2004) Mol Microbiol , vol.52 , pp. 1133-1143
    • Lange, U.1    Hausner, W.2
  • 22
    • 0027412632 scopus 로고
    • RPB7, one of two dissociable subunits of yeast RNA polymerase II, is essential for cell viability
    • McKune, K., Richards, K.L., Edwards, A.M., Young, R.A. Woychik, N.A. (1993) RPB7, one of two dissociable subunits of yeast RNA polymerase II, is essential for cell viability. Yeast 9 : 295 299.
    • (1993) Yeast , vol.9 , pp. 295-299
    • McKune, K.1    Richards, K.L.2    Edwards, A.M.3    Young, R.A.4    Woychik, N.A.5
  • 23
    • 34147158720 scopus 로고    scopus 로고
    • Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host-marker system based on antibiotic resistance
    • Matsumi, R., Manabe, K., Fukui, T., Atomi, H. Imanaka, T. (2007) Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host-marker system based on antibiotic resistance. J Bacteriol 189 : 2683 2691.
    • (2007) J Bacteriol , vol.189 , pp. 2683-2691
    • Matsumi, R.1    Manabe, K.2    Fukui, T.3    Atomi, H.4    Imanaka, T.5
  • 24
    • 37549061018 scopus 로고    scopus 로고
    • Archaeal transcription: Function of an alternative transcription factor B from Pyrococcus furiosus
    • Micorescu, M., Grunberg, S., Franke, A., Cramer, P., Thomm, M. Bartlett, M. (2008) Archaeal transcription: function of an alternative transcription factor B from Pyrococcus furiosus. J Bacteriol 190 : 157 167.
    • (2008) J Bacteriol , vol.190 , pp. 157-167
    • Micorescu, M.1    Grunberg, S.2    Franke, A.3    Cramer, P.4    Thomm, M.5    Bartlett, M.6
  • 25
    • 0035824661 scopus 로고    scopus 로고
    • Deletion of the RNA polymerase subunit RPB4 acts as a global, not stress-specific, shut-off switch for RNA polymerase II transcription at high temperatures
    • Miyao, T., Barnett, J.D. Woychik, N.A. (2001) Deletion of the RNA polymerase subunit RPB4 acts as a global, not stress-specific, shut-off switch for RNA polymerase II transcription at high temperatures. J Biol Chem 276 : 46408 46413.
    • (2001) J Biol Chem , vol.276 , pp. 46408-46413
    • Miyao, T.1    Barnett, J.D.2    Woychik, N.A.3
  • 26
    • 34249652975 scopus 로고    scopus 로고
    • The RPB7 orthologue E' is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation
    • Naji, S., Grunberg, S. Thomm, M. (2007) The RPB7 orthologue E' is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation. J Biol Chem 282 : 11047 11057.
    • (2007) J Biol Chem , vol.282 , pp. 11047-11057
    • Naji, S.1    Grunberg, S.2    Thomm, M.3
  • 27
    • 0035971082 scopus 로고    scopus 로고
    • Dissociable Rpb4-Rpb7 subassembly of RNA polymerase II binds to single-strand nucleic acid and mediates a post-recruitment step in transcription initiation
    • Orlicky, S.M., Tran, P.T., Sayre, M.H. Edwards, A.M. (2001) Dissociable Rpb4-Rpb7 subassembly of RNA polymerase II binds to single-strand nucleic acid and mediates a post-recruitment step in transcription initiation. J Biol Chem 276 : 10097 10102.
    • (2001) J Biol Chem , vol.276 , pp. 10097-10102
    • Orlicky, S.M.1    Tran, P.T.2    Sayre, M.H.3    Edwards, A.M.4
  • 28
    • 1942535726 scopus 로고    scopus 로고
    • Transcriptional regulation in Archaea
    • Ouhammouch, M. (2004) Transcriptional regulation in Archaea. Curr Opin Genet Dev 14 : 133 138.
    • (2004) Curr Opin Genet Dev , vol.14 , pp. 133-138
    • Ouhammouch, M.1
  • 29
    • 10644284660 scopus 로고    scopus 로고
    • A fully recombinant system for activator-dependent archaeal transcription
    • Ouhammouch, M., Werner, F., Weinzierl, R.O. Geiduschek, E.P. (2004) A fully recombinant system for activator-dependent archaeal transcription. J Biol Chem 279 : 51719 51721.
    • (2004) J Biol Chem , vol.279 , pp. 51719-51721
    • Ouhammouch, M.1    Werner, F.2    Weinzierl, R.O.3    Geiduschek, E.P.4
  • 30
    • 0033962956 scopus 로고    scopus 로고
    • Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable marker
    • Peck, R.F., Dassarma, S. Krebs, M.P. (2000) Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable marker. Mol Microbiol 35 : 667 676.
    • (2000) Mol Microbiol , vol.35 , pp. 667-676
    • Peck, R.F.1    Dassarma, S.2    Krebs, M.P.3
  • 31
    • 0034675857 scopus 로고    scopus 로고
    • The recruitment of RNA polymerase i on rDNA is mediated by the interaction of the A43 subunit with Rrn3
    • Peyroche, G., Milkereit, P., Bischler, N., Tschochner, H., Schultz, P., Sentenac, A., et al. (2000) The recruitment of RNA polymerase I on rDNA is mediated by the interaction of the A43 subunit with Rrn3. EMBO J 19 : 5473 5482.
    • (2000) EMBO J , vol.19 , pp. 5473-5482
    • Peyroche, G.1    Milkereit, P.2    Bischler, N.3    Tschochner, H.4    Schultz, P.5    Sentenac, A.6
  • 32
    • 0037474321 scopus 로고    scopus 로고
    • Whole genome expression profiles of yeast RNA polymerase II core subunit, Rpb4, in stress and nonstress conditions
    • Pillai, B., Verma, J., Abraham, A., Francis, P., Kumar, Y., Tatu, U., et al. (2003) Whole genome expression profiles of yeast RNA polymerase II core subunit, Rpb4, in stress and nonstress conditions. J Biol Chem 278 : 3339 3346.
    • (2003) J Biol Chem , vol.278 , pp. 3339-3346
    • Pillai, B.1    Verma, J.2    Abraham, A.3    Francis, P.4    Kumar, Y.5    Tatu, U.6
  • 33
    • 28844477575 scopus 로고    scopus 로고
    • Archaeal RNA polymerase is sensitive to intrinsic termination directed by transcribed and remote sequences
    • Santangelo, T.J. Reeve, J.N. (2006) Archaeal RNA polymerase is sensitive to intrinsic termination directed by transcribed and remote sequences. J Mol Biol 355 : 196 210.
    • (2006) J Mol Biol , vol.355 , pp. 196-210
    • Santangelo, T.J.1    Reeve, J.N.2
  • 34
    • 33847118046 scopus 로고    scopus 로고
    • TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro
    • Santangelo, T.J., Cubonova, L., James, C.L. Reeve, J.N. (2007) TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro. J Mol Biol 367 : 344 357.
    • (2007) J Mol Biol , vol.367 , pp. 344-357
    • Santangelo, T.J.1    Cubonova, L.2    James, C.L.3    Reeve, J.N.4
  • 35
    • 44249097297 scopus 로고    scopus 로고
    • Shuttle vector expression in Thermococcus kodakaraensis: Contributions of cis elements to protein synthesis in a hyperthermophilic archaeon
    • Santangelo, T.J., Cubonova, L. Reeve, J.N. (2008) Shuttle vector expression in Thermococcus kodakaraensis: contributions of cis elements to protein synthesis in a hyperthermophilic archaeon. Appl Environ Microbiol 74 : 3099 3104.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 3099-3104
    • Santangelo, T.J.1    Cubonova, L.2    Reeve, J.N.3
  • 36
    • 0037215528 scopus 로고    scopus 로고
    • Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1
    • Sato, T., Fukui, T., Atomi, H. Imanaka, T. (2003) Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J Bacteriol 185 : 210 220.
    • (2003) J Bacteriol , vol.185 , pp. 210-220
    • Sato, T.1    Fukui, T.2    Atomi, H.3    Imanaka, T.4
  • 37
    • 22144443201 scopus 로고    scopus 로고
    • Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis
    • Sato, T., Fukui, T., Atomi, H. Imanaka, T. (2005) Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis. Appl Environ Microbiol 71 : 3889 3899.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 3889-3899
    • Sato, T.1    Fukui, T.2    Atomi, H.3    Imanaka, T.4
  • 38
    • 0032963268 scopus 로고    scopus 로고
    • Rpb7 can interact with RNA polymerase II and support transcription during some stresses independently of Rpb4
    • Sheffer, A., Varon, M. Choder, M. (1999) Rpb7 can interact with RNA polymerase II and support transcription during some stresses independently of Rpb4. Mol Cell Biol 19 : 2672 2680.
    • (1999) Mol Cell Biol , vol.19 , pp. 2672-2680
    • Sheffer, A.1    Varon, M.2    Choder, M.3
  • 39
    • 34447313685 scopus 로고    scopus 로고
    • Transcription: Mechanism and regulation
    • In. Cavicchioli, R. (ed.). Washington, DC: American Society for Microbiology Press, pp.
    • Thomm, M. (2007) Transcription: mechanism and regulation. In In Archaea: Molecular and Cellular Biology. Cavicchioli, R. (ed.). Washington, DC : American Society for Microbiology Press, pp. 139 157.
    • (2007) In Archaea: Molecular and Cellular Biology. , pp. 139-157
    • Thomm, M.1
  • 40
    • 0035930324 scopus 로고    scopus 로고
    • Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex
    • Todone, F., Brick, P., Werner, F., Weinzierl, R.O. Onesti, S. (2001) Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex. Mol Cell 8 : 1137 1143.
    • (2001) Mol Cell , vol.8 , pp. 1137-1143
    • Todone, F.1    Brick, P.2    Werner, F.3    Weinzierl, R.O.4    Onesti, S.5
  • 41
    • 34548299670 scopus 로고    scopus 로고
    • Structure and function of archaeal RNA polymerases
    • Werner, F. (2007) Structure and function of archaeal RNA polymerases. Mol Microbiol 65 : 1395 1404.
    • (2007) Mol Microbiol , vol.65 , pp. 1395-1404
    • Werner, F.1
  • 42
    • 0036753399 scopus 로고    scopus 로고
    • A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription
    • Werner, F. Weinzierl, R.O. (2002) A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription. Mol Cell 10 : 635 646.
    • (2002) Mol Cell , vol.10 , pp. 635-646
    • Werner, F.1    Weinzierl, R.O.2
  • 43
    • 0024396228 scopus 로고
    • RNA polymerase II subunit RPB4 is essential for high- and low-temperature yeast cell growth
    • Woychik, N.A. Young, R.A. (1989) RNA polymerase II subunit RPB4 is essential for high- and low-temperature yeast cell growth. Mol Cell Biol 9 : 2854 2859.
    • (1989) Mol Cell Biol , vol.9 , pp. 2854-2859
    • Woychik, N.A.1    Young, R.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.