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Volumn 56, Issue 4, 2008, Pages 671-680

Genomic analysis of freshwater cyanophage Pf-WMP3 infecting cyanobacterium Phormidium foveolarum: The conserved elements for a phage

Author keywords

[No Author keywords available]

Indexed keywords

FRESH WATER;

EID: 53849139751     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-008-9386-7     Document Type: Article
Times cited : (43)

References (47)
  • 1
    • 0033542481 scopus 로고    scopus 로고
    • Marine viruses and their biogeochemical and ecological effects
    • JA Fuhrman 1999 Marine viruses and their biogeochemical and ecological effects Nature 399 541 548
    • (1999) Nature , vol.399 , pp. 541-548
    • Fuhrman, J.A.1
  • 2
    • 20444385133 scopus 로고    scopus 로고
    • Marine phage genomics: What have we learned
    • JH Paul MB Sullivan 2005 Marine phage genomics: what have we learned Curr Opin Biotechnol 16 299 307
    • (2005) Curr Opin Biotechnol , vol.16 , pp. 299-307
    • Paul, J.H.1    Sullivan, M.B.2
  • 3
    • 6344288922 scopus 로고    scopus 로고
    • Cyanophage infection and photoinhibition in marine cyanobacteria
    • S Bailey MR Clokie A Millard NH Mann 2004 Cyanophage infection and photoinhibition in marine cyanobacteria Res Microbiol 155 720 725
    • (2004) Res Microbiol , vol.155 , pp. 720-725
    • Bailey, S.1    Clokie, M.R.2    Millard, A.3    Mann, N.H.4
  • 4
    • 0041375471 scopus 로고    scopus 로고
    • Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
    • MB Sullivan JB Waterbury SW Chisholm 2003 Cyanophages infecting the oceanic cyanobacterium Prochlorococcus Nature 424 1047 1051
    • (2003) Nature , vol.424 , pp. 1047-1051
    • Sullivan, M.B.1    Waterbury, J.B.2    Chisholm, S.W.3
  • 6
  • 7
    • 0037385295 scopus 로고    scopus 로고
    • Phages of the marine cyanobacterial picophytoplankton
    • NH Mann 2003 Phages of the marine cyanobacterial picophytoplankton FEMS Microbiol Rev 27 17 34
    • (2003) FEMS Microbiol Rev , vol.27 , pp. 17-34
    • Mann, N.H.1
  • 9
    • 2342472596 scopus 로고    scopus 로고
    • Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget
    • U Dorigo S Jacquet JF Humbert 2004 Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget Appl Environ Microbiol 70 1017 1022
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1017-1022
    • Dorigo, U.1    Jacquet, S.2    Humbert, J.F.3
  • 10
    • 12244252269 scopus 로고    scopus 로고
    • Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments
    • CM Short CA Suttle 2005 Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments Appl Environ Microbiol 71 480 486
    • (2005) Appl Environ Microbiol , vol.71 , pp. 480-486
    • Short, C.M.1    Suttle, C.A.2
  • 12
    • 0035403340 scopus 로고    scopus 로고
    • Distribution, isolation, host specificity, and diversity of cyanophages infecting marine Synechococcus spp. in river estuaries
    • J Lu F Chen RE Hodson 2001 Distribution, isolation, host specificity, and diversity of cyanophages infecting marine Synechococcus spp. in river estuaries Appl Environ Microbiol 67 3285 3290
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3285-3290
    • Lu, J.1    Chen, F.2    Hodson, R.E.3
  • 13
    • 0036211846 scopus 로고    scopus 로고
    • Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20
    • Y Zhong F Chen SW Wilhelm L Poorvin RE Hodson 2002 Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20 Appl Environ Microbiol 68 1576 1584
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1576-1584
    • Zhong, Y.1    Chen, F.2    Wilhelm, S.W.3    Poorvin, L.4    Hodson, R.E.5
  • 14
    • 34548145189 scopus 로고    scopus 로고
    • Cyanophage Pf-WMP4, a T7-like phage infecting the freshwater cyanobacterium Phormidium foveolarum: Complete genome sequence and DNA translocation
    • X Liu M Shi S Kong Y Gao C An 2007 Cyanophage Pf-WMP4, a T7-like phage infecting the freshwater cyanobacterium Phormidium foveolarum: complete genome sequence and DNA translocation Virology 366 28 39
    • (2007) Virology , vol.366 , pp. 28-39
    • Liu, X.1    Shi, M.2    Kong, S.3    Gao, Y.4    An, C.5
  • 15
    • 0036255283 scopus 로고    scopus 로고
    • Genomic sequence and evolution of marine cyanophage P60: A new insight on lytic and lysogenic phages
    • F Chen J Lu 2002 Genomic sequence and evolution of marine cyanophage P60: a new insight on lytic and lysogenic phages Appl Environ Microbiol 68 2589 2594
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2589-2594
    • Chen, F.1    Lu, J.2
  • 16
    • 21344461027 scopus 로고    scopus 로고
    • Three Prochlorococcus cyanophage genomes: Signature features and ecological interpretations
    • MB Sullivan ML Coleman P Weigele F Rohwer SW Chisholm 2005 Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations PLoS Biol 3 e144
    • (2005) PLoS Biol , vol.3 , pp. 144
    • Sullivan, M.B.1    Coleman, M.L.2    Weigele, P.3    Rohwer, F.4    Chisholm, S.W.5
  • 19
    • 0038340041 scopus 로고    scopus 로고
    • The complete sequence of marine bacteriophage VpV262 infecting Vibrio parahaemolyticus indicates that an ancestral component of a T7 viral supergroup is widespread in the marine environment
    • SC Hardies AM Comeau P Serwer CA Suttle 2003 The complete sequence of marine bacteriophage VpV262 infecting Vibrio parahaemolyticus indicates that an ancestral component of a T7 viral supergroup is widespread in the marine environment Virology 310 359 371
    • (2003) Virology , vol.310 , pp. 359-371
    • Hardies, S.C.1    Comeau, A.M.2    Serwer, P.3    Suttle, C.A.4
  • 22
    • 33846208695 scopus 로고    scopus 로고
    • Whole genome sequencing of a novel temperate bacteriophage of P. aeruginosa: Evidence of tRNA gene mediating integration of the phage genome into the host bacterial chromosome
    • Y Tan K Zhang X Rao X Jin J Huang J Zhu Z Chen X Hu X Shen L Wang F Hu 2007 Whole genome sequencing of a novel temperate bacteriophage of P. aeruginosa: evidence of tRNA gene mediating integration of the phage genome into the host bacterial chromosome Cell Microbiol 9 479 491
    • (2007) Cell Microbiol , vol.9 , pp. 479-491
    • Tan, Y.1    Zhang, K.2    Rao, X.3    Jin, X.4    Huang, J.5    Zhu, J.6    Chen, Z.7    Hu, X.8    Shen, X.9    Wang, L.10    Hu, F.11
  • 24
    • 33749349217 scopus 로고    scopus 로고
    • Genomic analysis of Pseudomonas aeruginosa phages LKD16 and LKA1: Establishment of the phiKMV subgroup within the T7 supergroup
    • PJ Ceyssens R Lavigne W Mattheus A Chibeu K Hertveldt J Mast J Robben G Volckaert 2006 Genomic analysis of Pseudomonas aeruginosa phages LKD16 and LKA1: establishment of the phiKMV subgroup within the T7 supergroup J Bacteriol 188 6924 6931
    • (2006) J Bacteriol , vol.188 , pp. 6924-6931
    • Ceyssens, P.J.1    Lavigne, R.2    Mattheus, W.3    Chibeu, A.4    Hertveldt, K.5    Mast, J.6    Robben, J.7    Volckaert, G.8
  • 25
    • 0019231684 scopus 로고
    • A theory of modular evolution for bacteriophages
    • D Botstein 1980 A theory of modular evolution for bacteriophages Ann N Y Acad Sci 354 484 490
    • (1980) Ann N Y Acad Sci , vol.354 , pp. 484-490
    • Botstein, D.1
  • 26
    • 0038392697 scopus 로고    scopus 로고
    • Bacteriophages with tails: Chasing their origins and evolution
    • RW Hendrix GF Hatfull MC Smith 2003 Bacteriophages with tails: chasing their origins and evolution Res Microbiol 154 253 257
    • (2003) Res Microbiol , vol.154 , pp. 253-257
    • Hendrix, R.W.1    Hatfull, G.F.2    Smith, M.C.3
  • 29
    • 0018409915 scopus 로고
    • Generic assignments, strain histories and properties of pure cultures of cyanobacteria
    • R Rippka J Deruelles J Waterbury M Herdman R Stanier 1979 Generic assignments, strain histories and properties of pure cultures of cyanobacteria J Gen Microbiol 111 1 61
    • (1979) J Gen Microbiol , vol.111 , pp. 1-61
    • Rippka, R.1    Deruelles, J.2    Waterbury, J.3    Herdman, M.4    Stanier, R.5
  • 30
    • 0027376914 scopus 로고
    • Isolation and molecular characterization of five cyanophages propagated on Synechococcus sp. strain WH7803
    • WH Wilson IR Joint NG Carr NH Mann 1993 Isolation and molecular characterization of five cyanophages propagated on Synechococcus sp. strain WH7803 Appl Environ Microbiol 59 3736 3742
    • (1993) Appl Environ Microbiol , vol.59 , pp. 3736-3742
    • Wilson, W.H.1    Joint, I.R.2    Carr, N.G.3    Mann, N.H.4
  • 31
    • 0027525188 scopus 로고
    • Direct electron microscopy study on the morphological diversity of bacteriophage populations in lake Plusssee
    • J Demuth H Neve KP Witzel 1993 Direct electron microscopy study on the morphological diversity of bacteriophage populations in lake Plusssee Appl Environ Microbiol 59 3378 3384
    • (1993) Appl Environ Microbiol , vol.59 , pp. 3378-3384
    • Demuth, J.1    Neve, H.2    Witzel, K.P.3
  • 33
    • 0029360727 scopus 로고
    • Efficient isolation and mapping of Arobidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR
    • YG Liu N Mitsukawa T Oosumi RF Whittier 1995 Efficient isolation and mapping of Arobidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR Plant J 8 457 463
    • (1995) Plant J , vol.8 , pp. 457-463
    • Liu, Y.G.1    Mitsukawa, N.2    Oosumi, T.3    Whittier, R.F.4
  • 34
    • 0035875343 scopus 로고    scopus 로고
    • GeneMarkS: A self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    • J Besemer A Lomsadze M Borodovsky 2001 GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions Nucleic Acids Res 29 2607 2618
    • (2001) Nucleic Acids Res , vol.29 , pp. 2607-2618
    • Besemer, J.1    Lomsadze, A.2    Borodovsky, M.3
  • 36
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for detection of transfer RNA genes in genomic sequence
    • TM Lowe SR Eddy 1997 tRNAscan-SE: a program for detection of transfer RNA genes in genomic sequence Nucleic Acids Res 25 955 964
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 37
    • 0034044314 scopus 로고    scopus 로고
    • The PSIPRED protein structure prediction server
    • LJ McGuffin K Bryson DT Jones 2002 The PSIPRED protein structure prediction server Bioinformatics 16 404 405
    • (2002) Bioinformatics , vol.16 , pp. 404-405
    • McGuffin, L.J.1    Bryson, K.2    Jones, D.T.3
  • 38
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 39
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny inference package (version 3.2)
    • J Felsenstein 1989 PHYLIP-phylogeny inference package (version 3.2) Cladistics 5 164 166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 40
    • 0035043999 scopus 로고    scopus 로고
    • No syringes please, ejection of phage T7 DNA from the virion is enzyme driven
    • IJ Molineux 2001 No syringes please, ejection of phage T7 DNA from the virion is enzyme driven Mol Microbiol 40 1 8
    • (2001) Mol Microbiol , vol.40 , pp. 1-8
    • Molineux, I.J.1
  • 41
    • 1442300823 scopus 로고    scopus 로고
    • Peptidoglycan hydrolytic activities associated with bacteriophage virions
    • M Moak IJ Molineux 2004 Peptidoglycan hydrolytic activities associated with bacteriophage virions Mol Microbiol 51 1169 1183
    • (2004) Mol Microbiol , vol.51 , pp. 1169-1183
    • Moak, M.1    Molineux, I.J.2
  • 42
    • 28544445595 scopus 로고    scopus 로고
    • Information theory based T7-like promoter models: Classification of bacteriophages and differential evolution of promoters and their polymerases
    • Z Chen TD Schneider 2005 Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases Nucleic Acids Res 33 6172 6187
    • (2005) Nucleic Acids Res , vol.33 , pp. 6172-6187
    • Chen, Z.1    Schneider, T.D.2
  • 43
    • 33644861035 scopus 로고    scopus 로고
    • Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands
    • Z Chen TD Schneider 2006 Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands Nucleic Acids Res 34 1133 1147
    • (2006) Nucleic Acids Res , vol.34 , pp. 1133-1147
    • Chen, Z.1    Schneider, T.D.2
  • 44
    • 0018160959 scopus 로고
    • A model for the adsorption of phage P22 to Salmonella typhimurium
    • V Israel 1978 A model for the adsorption of phage P22 to Salmonella typhimurium J Gen Virol 40 669 673
    • (1978) J Gen Virol , vol.40 , pp. 669-673
    • Israel, V.1
  • 45
    • 0020964297 scopus 로고
    • Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements
    • JJ Dunn FW Studier 1983 Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements J Mol Biol 166 477 535
    • (1983) J Mol Biol , vol.166 , pp. 477-535
    • Dunn, J.J.1    Studier, F.W.2


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