Burkholderia caribensis sp. nov., an exopolysaccharide-producing bacterium isolated from vertisol microaggregates in Martinique

International Journal of Systematic Bacteriology

Volumn 49, Issue 2, 1999, Pages 787-794

  Achouak, Wafa ^a  

^a IRFM   (France)

Author keywords

Burkholderia caribensis sp. nov.; DNA DNA hybridization; Phenotypic analysis; Rrs analysis; Vertisol microaggregate

Indexed keywords

BACTERIAL DNA; POLYSACCHARIDE;

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BURKHOLDERIA; BURKHOLDERIA CARIBENSIS; DNA DNA HYBRIDIZATION; DNA SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL;

BACTERIA (MICROORGANISMS); BURKHOLDERIA; BURKHOLDERIA CARIBENSIS; BURKHOLDERIA CEPACIA; BURKHOLDERIA GLATHEI; NEGIBACTERIA; PROKARYOTA;

EID: 0032955598     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-49-2-787     Document Type: Article

References (41)

1. Anderson, R. D., Bao, C.-Y., Minnick, D. T., Veigel, M. & Sedwick, W. D. (1992). Optimization of double-stranded DNA sequencing for polymerase chain reaction products. USB Edit Comment 19, 39-40 and 57-58.
2. Azegami, K., Nishiyama, K., Watanabe, Y., Kadota, I., Ophuchi, A. & Fukazawa, C. (1987). Pseiidomonas plantarn sp. nov., the causal aeent of rice seedling blight. Int J Syst Bacteriol 37, 144-152.
3. Ballard, R. W., Palleroni, N. J., Stanier, R. Y. & Mandel, M. (1970). Taxonomy of aerobic pseudomonads Pseiidomonas cepacia, P. Diarginata, P. alliicota and P. caryophylli. J Gen Microbiol 60, 199-214.
4. Bell, S. C. & Turner, J. M. (1973). lodinin biosynthesis by a pseudomonad. Biochem Soc Trans 1, 751-753.
5. Brenner, D. J., McWorter, A. C, Leete Knutson, J. K. & Steigerwalt, A. G. (1982). Escherichia vitlneris: a new species of Enterobacteriaceac associated with human wounds. J Clin Microbiol 15, 1133-1140.
6. Brett, P. J., DeShazer, D. & Woods, D. E. (1997). Characterization of Biirkholdcria psciidomallei and Burkholderia pseudomalleilike strains. Epiclcmiol Infect 118, 137-148.
7. Brett, P. J., DeShazer, D. & Woods, D. E. (1998). Burkholderia tliailandensis sp. nov., a Burkholderia pseudomallei-like species. Int J Syst Bacteriol 48, 317-320.
8. Crosa, J. M., Brenner, D. J. & Falkow, S. (1973). Use of a single strand-specific nuclease for analysis of bacterial and plasmid deoxyribonucleic acid homo- and heteroduplexes. J Bacteriol 115,904-911.
9. De Vos, P., Goor, M., Gillis, M. & De Ley, J. (1985). Ribosomal ribonucleic acid cistron similarities of phytopathogenic Pseiidomonas species. Int J Syst Bacteriol 35, 169-184.
10. 2-fixing isolates from rice in Vietnam, fut J Syst Bacteriol 45, 274-289.
11. Grimont, P. A. D., Popoff, M. Y., Grimont, F., Coynault, C. & Lemelin, M. (1980). Reproducibility and correlation study of three deoxynucleic acid hybridization procedure. Curr Aficrobiol 4, 325-330.
12. Hebbar, K. P., Davey, A. G. 81 Dart, P. J. (1992a). Rhi:obactcria of maize antagonistic to Fusarium moniliformc, a soil-borne fungal pathogen: identification and isolation. Soil Biol Biochem 24, 989-997.
13. Hebbar, K.P., Davey, A. G., Merrin, J. & Dart, P. J. (1992b). Pseudomonas cepacia, a potential suppresser of maize soilborne diseases: seed inoculation and maize root colonization. Soil Biol Biochcm 24, 999-1007.
14. Imanaka, H., Kousaka, M., Tamura, G. & Arima, K. (1965). Studies on pyrrolnitrin, a new antibiotic. Taxonomy studies on pyrrolnitrin-producing strain. J Antibiot 18, 205-206.
15. Kabir, M., Chotte, J. L, Rahman, M., Bally, R. & JocteurMonrozier, L. (1994). Distribution of soil fractions and location of soil bacteria in a vertisol under cultivation and perennial grass. Plant Soil 163, 243-255.
16. Kersters, K., Ludwig, W., Vancanneyt, M., De Vos, P., Gillis, M. & Schleifer, K.-H. (1996). Recent changes in the classification of the Pseitdomonas: an overview. Syst Appl Microbiol 19, 465-467.
17. Lumsden, R. D. & Sasser, M. (1986). Medium for the isolation of Pseiidonionas cepacia biotype from soil and the bacterial biotype. US Patent no. 4.588.584.
18. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
19. Migula, W. (1894). Arbeiten ans dem Bacteriologisclien Institut der Technischen Hochschule :u Karlsruhe l, 235-238.
20. Mueller, J. G., Devereux, R., Santavy, D. L, Lantz, S. E., Willis, S. G. & Pritchard, P. H. (1997). Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils. Antonie Leeuwenhoek 71, 329-343.
21. Owen, R. J. & Lapage, S. P. (1976). The thermal denaturation of partly purified bacterial deoxyribonucleic acid and its taxonomic implications. J Appl Bacteriol 41, 335-340.
22. AL. In Bergey's Manual of Systematic Bacteriology, vol. I, pp. 141-199. Edited by N.R.Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
23. Palleroni, N.J. (1992). Present situation in the taxonomy of aerobic pseudomonads. In Pseudomonas: Molecular Biology and Biotechnology, pp. 105-115. Edited by E. Gali, S. Silver & B. Wit. Washington, DC: American Society for Microbiology.
24. Palleroni, N. J., Kunisawa, R., Contopoulou, R. & Doudoroff, M. (1973). Nucleic acid homologies in the genus Pseiidomonas. Int J Syst Bacteriol 23, 333-339.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
26. Segers, P., Vancanneyt, M., Pot, B., Torck, U., Hoste, B., Dewettinck, D., Falsen, E., Kersters, K. & De Vos, P. (1994). Classification of Pseiidomonas diminuta Leifson and Hugh 1954 and Pseudomonas vesicularis Busing, Doll and Freytag 1953 in Brevundimonasgen. nov. as Brevundimonas diminuta comb. nov. and Brevundimonas vesicularis comb, nov., respectively. Int J Syst Bacteriol 44, 499-510.
27. Severini, G. (1913). Una bacteriosi dell.Ixia maculata e del Gladiolus coluilli. Ann Bot (Rome) 11, 413-424.
28. Springael, D., van Thor, J., Goorissen, H., Ryngaert, A., De Baere, R., Van Hauwe, P., Commandeur, L C, Parsons, J. R., De Wächter, R. & Mergeay, M. (1996). RP4::Mu3A-mediated in vivo cloning and transfer of a chlorobiphenyl catabolic pathway. Microbiology 142, 3283-3293.
29. Stackebrandt, E. & Goebel, B. M. (1994). A place for DNA-DNA rcassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
30. Stapp, C. (1935). Contemporary understanding of bacterial plant diseases and their causal organisms. Bot Rev 1, 405-418.
31. Tisdall, J. M. (1994). Possible role of soil microorganisms in aggregation in soils. Plant Soil 159, 115-121.
32. Urakami, T., Ito-Yoshida, C, Araki, H., Kijima, T., Suzuki, K. I. & Komagata, K. (1994). Transfer of Pseiidonwnas plantarii and Pseiidonwnas glinnae to Biirkholderia as Burkliolderia spp. and description of Biirkholderia \andii sp. nov. Int J Syst Bacteriol 44, 235-245.
33. Vandamme, P., Johannes, A. G., Cox, H. C. & Berends, W. (1960). On toxoflavin, the yellow poison of Pscudoinonas cocovenenans. Reel Trav Chim Pays-Bas Belg 79, 255-267.
34. Vandamme, P., Holmes, B., Vancanneyt, M. & 8 other authors (1997). Occurrence of multiple genomovars of Biirkholderia cepacia in cystic fibrosis patients and proposal of Biirkholderia mnltivorans sp. nov. Int J Syst Bacteriol 47, 1188-1200.
35. Viallard, V., Poirier, I., Cournoyer, B., Haurat, J., Wiebkin, S., Ophel-Keller, K. & Balandreau, J. (1998). Biirkholderia graminis sp. a novel species of rhizospheric Biirkholderia species and reassessment of [Pseudomonas] phenazinhun, [Pseudonwnas] pyrrocinia and [Pseudonwnas] glalliei as Biirkholderia. Int J Syst Bacteriol 48, 549-563.
36. Yabuuchi, E., Yano, I., Oyaizu, H., Hashimoto, Y., Ezaki, T. & Yamamoto, H. (1990). Proposal of Sphingomonas paiicinwbilis gen. nov. and comb, nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikityae sp. nov., Sphingomonas adliaesiva sp. nov., Sphingomonas capsulata comb. nov. and two genospecies of the genus Sphingomoiias. Int J Syst Bacteriol 40, 99-119.
37. Yabuuchi, E., Kosako, Y., Oyaizu, H., Yano, I., Hotta, H., Hashimoto, Y., Ezaki, T. & Arakawa, M. (1992). Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomoiias homology group II to the new genus, with the type species Burkholderia ccpacia (Palleroni and Holmes 1981) comb. nov. Microbiol Immunol 36, 1251-1275.
38. Yabuuchi, E., Kosako, Y., Yano, I., Hotta, H. & Nishiuchi, Y. (1995). Transfer of two Burkholderia and an Alcaligenes species to Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb, nov., Ralstonia solanaccarum (Smith 1896) comb. nov. and Ralstonia eiilropha (Davis 1969) comb. nov. Microbiol Immunol 39, 897-904.
39. Yohalem, D. S. & Lorbeer, J.W. (1994). Intraspecific metabolic diversity among strains of Burkholderia cepacia isolated from decayed onions, soils and the clinical environment. Antonie Lecmvenhoek 65, 111-131.
40. Zhao, N. X., Qu, CF., Wang, E. T. & Chen, W. X. (1995). Phylogenetic evidence for the transfer of Pseudomonas cocovenenans (van Damme et al. 1960) to the genus Burkholderia as Burkholderia cocovenencms (van Damme et al. 1960) comb, nov. Int J Syst Bacteriol 45, 600-603.
41. Zolg, W. & Ottow, J. C. G. (1975). Pseudomonas glathei sp. nov. A new nitrogen scavenging rod isolated from acid lateritic relicts in Germany. Z Allg Mikrobiol 15, 287-299.