DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 51, 2004, Pages 17771-17776

  White, Eric J ^a   Emanuelsson, Olof ^a   Scalzo, David ^b   Royce, Thomas ^a   Kosak, Steven ^b   Oakeley, Edward J ^e   Weissman, Sherman ^c   Gerstein, Mark ^a   Groudine, Mark ^b,d   Snyder, Michael ^a   Schübeler, Dirk ^e  

^a YALE UNIVERSITY   (United States)

^b Fred Hutchinson Cancer Research Center   (United States)

^c YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF WASHINGTON   (United States)

^e FRIEDRICH MIESCHER INSTITUTE FOR BIOMEDICAL RESEARCH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID COMPOSITION; ARTICLE; CELL TYPE; CHROMOSOME 22; CONTROLLED STUDY; CORRELATION ANALYSIS; CYTOLOGY; DEVELOPMENT; DNA REPLICATION; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE REPLICATION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; PRIORITY JOURNAL;

CELL DIFFERENTIATION; CELL LINE; CHROMOSOMES, HUMAN, PAIR 22; DNA; DNA REPLICATION TIMING; GENE EXPRESSION PROFILING; HUMANS; KARYOTYPING; LUNG; ORGAN SPECIFICITY; RNA, MESSENGER; TIME FACTORS; TRANSCRIPTION, GENETIC;

EID: 19944403183     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0408170101     Document Type: Article

References (29)

1. Huberman, J. A. & Riggs, A. D. (1968) J. Mol. Biol. 32, 327-341.
2. Hand, R. (1978) Cell 15, 317-325.
3. Dutrillaux, B., Couturier, J., Richer, C. L. & Viegas-Pequinot, E. (1976) Chromosoma 58, 51-61.
4. Cimbora, D. M. & Groudine, M. (2001) Cell 104, 643-646.
5. Drouin, R., Holmquist, G. P. & Richer, C. L. (1994) Adv. Hum. Genet. 22, 47-115.
6. Federico, C., Saccone, S. & Bernardi, G. (1998) Cytogenet. Cell Genet. 80, 83-88.
7. Woodfine, K., Fiegler, H., Beare, D. M., Collins, J. E., McCann, O. T., Young, B. D., Debernadi, S., Mott, R., Dunham, I. & Carter, N. P. (2004) Hum. Mol. Genet. 13, 191-202.
8. Schubeler, D., Scalzo, D., Kooperberg, C., van Steensel, B., Delrow, J. & Groudine, M. (2002) Nat. Genet. 32, 438-442.
9. Rinn, J. L., Euskirchen, G., Bertone, P., Martone, R., Luscombe, N. M., Hartman, S., Harrison, P. M., Nelson, F. K., Miller, P., Gerstein, M., et al. (2003) Genes Dev. 17, 529-540.
10. Kapranov, P., Cawley, S. E., Drenkow, J., Bekiranov, S., Strausberg, R. L., Fodor, S. P. & Gingeras, T. R. (2002) Science 296, 916-919.
11. Kampa, D., Cheng, J., Kapranov, P., Yamanaka, M., Brubaker, S., Cawley, S., Drenkow, J., Piccolboni, A., Bekiranov, S., Helt, G., et al. (2004) Genome Res. 14, 331-342.
12. Bruel, S. D., Bradley, K. H., Hance, A. J., Schafer, M. P., Berg, R. A. & Crystal, R. G. (1980) J. Biol. Chem. 255, 5250-5260.
13. MacLeod, R. A. & Bryant, P. E. (1992) Mutagenesis 7, 285-290.
14. Cimbora, D. M., Schubeler, D., Reik, A., Hamilton, J., Francastel, C., Epner, E. M. & Groudine, M. (2000) Mol. Cell. Biol. 20, 5581-5591.
15. Lieb, J. D., Liu, X., Botstein, D. & Brown, P. O. (2001) Nat. Genet. 28, 327-334.
16. van Steensel, B., Delrow, J. & Henikoff, S. (2001) Nat. Genet. 27, 304-308.
17. Luscombe, N. M., Royce, T. E., Bertone, P., Echols, N., Horak, C. E., Chang, J. T., Snyder, M. & Gerstein, M. (2003) Nucleic Acids Res. 31, 3477-3482.
18. Quackenbush, J. (2002) Nat. Genet. 32, 496-501.
19. Schrock, E., DuManoir, S., Veldman, T., Schoell, B., Wienberg, J., Ferguson-Smith, M. A., Ning, Y., Ledbetter, D. H., Bar-Am, I., Soenksen, D., et al. (1996) Science 273, 494-497.
20. Hansen, R. S., Canfield, T. K., Lamb, M. M., Gartler, S. M. & Laird, C. D. (1993) Cell 73, 1403-1409.
21. Cleveland, W. S. & Devlin, S. J. (1988) J. Am. Stat. Assoc. 83, 596-610.
22. Francke, U. (1994) Cytogenet. Cell Genet. 6, 206-219.
23. Saccone, S. & Bernardi, G. (2001) Methods Cell Sci. 23, 7-15.
24. Smith, Z. E. & Higgs, D. R. (1999) Hum. Mol. Genet. 8, 1373-1386.
25. Schubeler, D., MacAlpine, D. M., Scalzo, D., Wirbelauer, C., Kooperberg, C., van Leeuwen, F., Gottschling, D. E., O'Neill, L. P., Turner, B. M., Delrow, J., et al. (2004) Genes Dev. 18, 1263-1271.
26. Gilbert, D. (2002) Curr. Opin. Cell Biol. 14, 377-383.
27. Hatton, K. S., Dhar, V., Brown, E. H., Iqbal, M. A., Stuart, S., Didamo, V. T. & Schildkraut, C. L. (1988) Mol. Cell. Biol. 8, 2149-2158.
28. Gartler, S. M., Goldstein, L., Tyler-Freer, S. E. & Hansen, R. S. (1999) Hum. Mol. Genet. 8, 1085-1089.
29. Azuara, V., Brown, K. E., Williams, R. R., Webb, N., Dillon, N., Festenstein, R., Buckle, V., Merkenschlager, M. & Fisher, A. G. (2003) Nat. Cell Biol. 5, 668-674.