-
1
-
-
33846269602
-
tRNA's wobble decoding of the genome: 40 years of modification
-
Agris P.F., Vendeix F.A., and Graham W.D. tRNA's wobble decoding of the genome: 40 years of modification. J. Mol. Biol. 366 (2007) 1-13
-
(2007)
J. Mol. Biol.
, vol.366
, pp. 1-13
-
-
Agris, P.F.1
Vendeix, F.A.2
Graham, W.D.3
-
2
-
-
20044375499
-
Transfer RNA modification
-
Bock A., Curtis R., Kaper J.B., Neidhardt F.C., Nystrom T., and Squires C.L. (Eds), ASM Press, Washington, DC http://www.ecosal.org
-
Björk G.R., and Hagervall T.G. Transfer RNA modification. In: Bock A., Curtis R., Kaper J.B., Neidhardt F.C., Nystrom T., and Squires C.L. (Eds). Escherichia coli and Salmonella. Cellular and Molecular Biology (2005), ASM Press, Washington, DC. http://www.ecosal.org http://www.ecosal.org
-
(2005)
Escherichia coli and Salmonella. Cellular and Molecular Biology
-
-
Björk, G.R.1
Hagervall, T.G.2
-
3
-
-
33750998821
-
The early history of tRNA recognition by aminoacyl-tRNA synthetases
-
Giege R. The early history of tRNA recognition by aminoacyl-tRNA synthetases. J. Biosci. 31 (2006) 477-488
-
(2006)
J. Biosci.
, vol.31
, pp. 477-488
-
-
Giege, R.1
-
4
-
-
0028272470
-
The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles
-
Kowalak J.A., Dalluge J.J., McCloskey J.A., and Stetter K.O. The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles. Biochemistry 33 (1994) 7869-7876
-
(1994)
Biochemistry
, vol.33
, pp. 7869-7876
-
-
Kowalak, J.A.1
Dalluge, J.J.2
McCloskey, J.A.3
Stetter, K.O.4
-
5
-
-
0042337212
-
opt, 95 °C)
-
opt, 95 °C). J. Bacteriol. 185 (2003) 5483-5490
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5483-5490
-
-
Noon, K.R.1
Guymon, R.2
Crain, P.F.3
McCloskey, J.A.4
Thomm, M.5
Lim, J.6
Cavicchioli, R.7
-
6
-
-
0028988341
-
2-dimethylguanosine in eukaryotic tRNA: importance of the tRNA architecture
-
2-dimethylguanosine in eukaryotic tRNA: importance of the tRNA architecture. Biochimie 77 (1995) 54-61
-
(1995)
Biochimie
, vol.77
, pp. 54-61
-
-
Edqvist, J.1
Straby, K.B.2
Grosjean, H.3
-
7
-
-
0028943560
-
Posttranscriptionally modified nucleosides in transfer RNA: their locations and frequencies
-
Grosjean H., Sprinzl M., and Steinberg S. Posttranscriptionally modified nucleosides in transfer RNA: their locations and frequencies. Biochimie 77 (1995) 139-141
-
(1995)
Biochimie
, vol.77
, pp. 139-141
-
-
Grosjean, H.1
Sprinzl, M.2
Steinberg, S.3
-
8
-
-
13444288185
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Sprinzl M., and Vassilenko K.S. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res. 33 (2005) D139-D140
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Sprinzl, M.1
Vassilenko, K.S.2
-
10
-
-
33744456017
-
2G10 methyltransferase, a genuine autonomously folding domain
-
2G10 methyltransferase, a genuine autonomously folding domain. Nucleic Acids Res. 34 (2006) 2483-2494
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 2483-2494
-
-
Gabant, G.1
Auxilien, S.2
Tuszynska, I.3
Locard, M.4
Gajda, M.J.5
Chaussinand, G.6
-
11
-
-
32644445218
-
2-monomethylated derivative and its possible role in avoiding alternative conformations in archaeal tRNA
-
2-monomethylated derivative and its possible role in avoiding alternative conformations in archaeal tRNA. J. Mol. Biol. 357 (2006) 387-399
-
(2006)
J. Mol. Biol.
, vol.357
, pp. 387-399
-
-
Urbonavicius, J.1
Armengaud, J.2
Grosjean, H.3
-
12
-
-
0027935988
-
Structural elements in yeast tRNAs required for homologous modification of guanosine-26 into dimethylguanosine-26 by the yeast Trm1 tRNA-modifying enzyme
-
Edqvist J., Blomqvist K., and Straby K.B. Structural elements in yeast tRNAs required for homologous modification of guanosine-26 into dimethylguanosine-26 by the yeast Trm1 tRNA-modifying enzyme. Biochemistry 33 (1994) 9546-9551
-
(1994)
Biochemistry
, vol.33
, pp. 9546-9551
-
-
Edqvist, J.1
Blomqvist, K.2
Straby, K.B.3
-
15
-
-
0023046558
-
A single tRNA (guanine) methyltransferase from Tetrahymena with both mono- and di-methylating activity
-
Reinhart M.P., Lewis J.M., and Leboy P.S. A single tRNA (guanine) methyltransferase from Tetrahymena with both mono- and di-methylating activity. Nucleic Acids Res. 14 (1986) 1131-1148
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 1131-1148
-
-
Reinhart, M.P.1
Lewis, J.M.2
Leboy, P.S.3
-
16
-
-
0342546428
-
2-dimethylguanosine-26 methyltransferase encoded by gene trm1 increases efficiency of suppression of an ochre codon in Schizosaccharomyces pombe
-
2-dimethylguanosine-26 methyltransferase encoded by gene trm1 increases efficiency of suppression of an ochre codon in Schizosaccharomyces pombe. FEBS Lett. 464 (1999) 67-70
-
(1999)
FEBS Lett.
, vol.464
, pp. 67-70
-
-
Niederberger, C.1
Graub, R.2
Costa, A.3
Desgres, J.4
Schweingruber, M.E.5
-
17
-
-
0033534795
-
246arginine is important for the enzyme activity
-
246arginine is important for the enzyme activity. Gene 226 (1999) 73-81
-
(1999)
Gene
, vol.226
, pp. 73-81
-
-
Liu, J.1
Zhou, G.Q.2
Straby, K.B.3
-
18
-
-
0034666278
-
26) dimethyltransferase: functional expression and characterization of a cloned hTRM1 gene
-
26) dimethyltransferase: functional expression and characterization of a cloned hTRM1 gene. Nucleic Acids Res. 28 (2000) 3445-3451
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3445-3451
-
-
Liu, J.1
Straby, K.B.2
-
26
-
-
0033522646
-
The 2.2 Å structure of the rRNA methyltransferase ErmC′ and its complexes with cofactor and cofactor analogs: implications for the reaction mechanism
-
Schluckebier G., Zhong P., Stewart K.D., Kavanaugh T.J., and Abad-Zapatero C. The 2.2 Å structure of the rRNA methyltransferase ErmC′ and its complexes with cofactor and cofactor analogs: implications for the reaction mechanism. J. Mol. Biol. 289 (1999) 277-291
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 277-291
-
-
Schluckebier, G.1
Zhong, P.2
Stewart, K.D.3
Kavanaugh, T.J.4
Abad-Zapatero, C.5
-
27
-
-
2342650072
-
Crystal structure of KsgA, a universally conserved rRNA adenine dimethyltransferase in Escherichia coli
-
O'Farrell H.C., Scarsdale J.N., and Rife J.P. Crystal structure of KsgA, a universally conserved rRNA adenine dimethyltransferase in Escherichia coli. J. Mol. Biol. 339 (2004) 337-353
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 337-353
-
-
O'Farrell, H.C.1
Scarsdale, J.N.2
Rife, J.P.3
-
28
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm L., and Sander C. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233 (1993) 123-138
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
29
-
-
0028210328
-
Crystal structure of catechol O-methyltransferase
-
Vidgren J., Svensson L.A., and Liljas A. Crystal structure of catechol O-methyltransferase. Nature 368 (1994) 354-358
-
(1994)
Nature
, vol.368
, pp. 354-358
-
-
Vidgren, J.1
Svensson, L.A.2
Liljas, A.3
-
30
-
-
0036906006
-
Structure-based experimental confirmation of biochemical function to a methyltransferase, MJ0882, from hyperthermophile Methanococcus jannaschii
-
Huang L., Hung L., Odell M., Yokota H., Kim R., and Kim S.H. Structure-based experimental confirmation of biochemical function to a methyltransferase, MJ0882, from hyperthermophile Methanococcus jannaschii. J. Struct. Funct. Genomics 2 (2002) 121-127
-
(2002)
J. Struct. Funct. Genomics
, vol.2
, pp. 121-127
-
-
Huang, L.1
Hung, L.2
Odell, M.3
Yokota, H.4
Kim, R.5
Kim, S.H.6
-
31
-
-
34247097013
-
Methyltransferase that modifies guanine 966 of the 16 S rRNA: functional identification and tertiary structure
-
Lesnyak D.V., Osipiuk J., Skarina T., Sergiev P.V., Bogdanov A.A., Edwards A., et al. Methyltransferase that modifies guanine 966 of the 16 S rRNA: functional identification and tertiary structure. J. Biol. Chem. 282 (2007) 5880-5887
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 5880-5887
-
-
Lesnyak, D.V.1
Osipiuk, J.2
Skarina, T.3
Sergiev, P.V.4
Bogdanov, A.A.5
Edwards, A.6
-
33
-
-
0346494941
-
SCOP database in 2004: refinements integrate structure and sequence family data
-
Andreeva A., Howorth D., Brenner S.E., Hubbard T.J., Chothia C., and Murzin A.G. SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res. 32 (2004) D226-D229
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Andreeva, A.1
Howorth, D.2
Brenner, S.E.3
Hubbard, T.J.4
Chothia, C.5
Murzin, A.G.6
-
34
-
-
0029165043
-
Structure of phenylalanyl-tRNA synthetase from Thermus thermophilus
-
Mosyak L., Reshetnikova L., Goldgur Y., Delarue M., and Safro M.G. Structure of phenylalanyl-tRNA synthetase from Thermus thermophilus. Nat. Struct. Biol. 2 (1995) 537-547
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 537-547
-
-
Mosyak, L.1
Reshetnikova, L.2
Goldgur, Y.3
Delarue, M.4
Safro, M.G.5
-
36
-
-
34548801413
-
Detection of enzymatic activity of transfer RNA modification enzymes using radiolabeled tRNA substrates
-
Grosjean H., Droogmans L., Roovers M., and Keith G. Detection of enzymatic activity of transfer RNA modification enzymes using radiolabeled tRNA substrates. Methods Enzymol. 425 (2007) 55-101
-
(2007)
Methods Enzymol.
, vol.425
, pp. 55-101
-
-
Grosjean, H.1
Droogmans, L.2
Roovers, M.3
Keith, G.4
-
39
-
-
0142216637
-
Insights into catalysis by a knotted TrmD tRNA methyltransferase
-
Elkins P.A., Watts J.M., Zalacain M., van Thiel A., Vitazka P.R., Redlak M., et al. Insights into catalysis by a knotted TrmD tRNA methyltransferase. J. Mol. Biol. 333 (2003) 931-949
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 931-949
-
-
Elkins, P.A.1
Watts, J.M.2
Zalacain, M.3
van Thiel, A.4
Vitazka, P.R.5
Redlak, M.6
-
41
-
-
0023424957
-
A synthetic substrate for tRNA splicing
-
Reyes V.M., and Abelson J. A synthetic substrate for tRNA splicing. Anal. Biochem. 166 (1987) 90-106
-
(1987)
Anal. Biochem.
, vol.166
, pp. 90-106
-
-
Reyes, V.M.1
Abelson, J.2
-
43
-
-
2142689200
-
SOLVE and RESOLVE: automated structure solution, density modification and model building
-
Terwilliger T. SOLVE and RESOLVE: automated structure solution, density modification and model building. J. Synchrotron Radiat. 11 (2004) 49-52
-
(2004)
J. Synchrotron Radiat.
, vol.11
, pp. 49-52
-
-
Terwilliger, T.1
-
44
-
-
0347383761
-
SOLVE and RESOLVE: automated structure solution and density modification
-
Terwilliger T.C. SOLVE and RESOLVE: automated structure solution and density modification. Methods Enzymol. 374 (2003) 22-37
-
(2003)
Methods Enzymol.
, vol.374
, pp. 22-37
-
-
Terwilliger, T.C.1
-
45
-
-
0032790081
-
XtalView/Xfit-a versatile program for manipulating atomic coordinates and electron density
-
McRee D.E. XtalView/Xfit-a versatile program for manipulating atomic coordinates and electron density. J. Struct. Biol. 125 (1999) 156-165
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
46
-
-
3543012707
-
Crystallography & NMR system: a new software suite for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr., Sect. D: Biol. Crystallogr. 54 (1998) 905-921
-
(1998)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
-
47
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
Collaborative Computational Project, Number 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr., Sect. D: Biol. Crystallogr. 50 (1994) 760-763
-
(1994)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
50
-
-
0035964342
-
Electrostatics of nanosystems: application to microtubules and the ribosome
-
Baker N.A., Sept D., Joseph S., Holst M.J., and McCammon J.A. Electrostatics of nanosystems: application to microtubules and the ribosome. Proc. Natl Acad. Sci. USA 98 (2001) 10037-10041
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
51
-
-
23144448512
-
ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures
-
Landau M., Mayrose I., Rosenberg Y., Glaser F., Martz E., Pupko T., and Ben-Tal N. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res. 33 (2005) W299-W302
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Landau, M.1
Mayrose, I.2
Rosenberg, Y.3
Glaser, F.4
Martz, E.5
Pupko, T.6
Ben-Tal, N.7
|