메뉴 건너뛰기




Volumn 357, Issue 2, 2006, Pages 387-399

Identity elements required for enzymatic formation of N2,N 2-dimethylguanosine from N2-monomethylated derivative and its possible role in avoiding alternative conformations in archaeal tRNA

Author keywords

Archaea; Methylguanosine; Methyltransferase; Pyrococcus abyssi; tRNA modification

Indexed keywords

ARCHAEAL RNA; GUANOSINE DERIVATIVE; METHYLTRANSFERASE; N 2,N 2 DIMETHYLGUANOSINE; NUCLEOTIDE; TRANSFER RNA; UNCLASSIFIED DRUG; URACIL;

EID: 32644445218     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2005.12.087     Document Type: Article
Times cited : (41)

References (44)
  • 2
    • 13444288185 scopus 로고    scopus 로고
    • Compilation of tRNA sequences and sequences of tRNA genes
    • M. Sprinzl, and K.S. Vassilenko Compilation of tRNA sequences and sequences of tRNA genes Nucl. Acids Res. 33 2005 D139 D140
    • (2005) Nucl. Acids Res. , vol.33
    • Sprinzl, M.1    Vassilenko, K.S.2
  • 3
    • 0037439213 scopus 로고    scopus 로고
    • TRNA transfers to the limelight
    • A.K. Hopper, and E.M. Phizicky tRNA transfers to the limelight Genes Dev. 17 2003 162 180
    • (2003) Genes Dev. , vol.17 , pp. 162-180
    • Hopper, A.K.1    Phizicky, E.M.2
  • 5
    • 0021902799 scopus 로고
    • The nucleotide sequence of tyrosine tRNAQ* psi a from bovine liver
    • G.D. Johnson, I.L. Pirtle, and R.M. Pirtle The nucleotide sequence of tyrosine tRNAQ* psi A from bovine liver Arch. Biochem. Biophys. 236 1985 448 453
    • (1985) Arch. Biochem. Biophys. , vol.236 , pp. 448-453
    • Johnson, G.D.1    Pirtle, I.L.2    Pirtle, R.M.3
  • 6
    • 0023061746 scopus 로고
    • A human and a plant intron-containing tRNA-Tyr gene are both transcribed in a HeLa cell extract but spliced along different pathways
    • H. van Tol, N. Stange, H.J. Gross, and H. Beier A human and a plant intron-containing tRNA-Tyr gene are both transcribed in a HeLa cell extract but spliced along different pathways EMBO J. 6 1987 35 41
    • (1987) EMBO J. , vol.6 , pp. 35-41
    • Van Tol, H.1    Stange, N.2    Gross, H.J.3    Beier, H.4
  • 7
    • 0021153752 scopus 로고
    • Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class I tRNAs
    • R. Gupta Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class I tRNAs J. Biol. Chem. 259 1984 9461 9471
    • (1984) J. Biol. Chem. , vol.259 , pp. 9461-9471
    • Gupta, R.1
  • 8
    • 0022529031 scopus 로고
    • Transfer RNAs of Halobacterium volcanii: Sequences of five leucine and three serine tRNAs
    • R. Gupta Transfer RNAs of Halobacterium volcanii: sequences of five leucine and three serine tRNAs System Appl. Microbiol. 7 1986 102 105
    • (1986) System Appl. Microbiol. , vol.7 , pp. 102-105
    • Gupta, R.1
  • 9
    • 0021112528 scopus 로고
    • Sequences of halobacterial tRNAs and the paucity of U in the first position of their anticodons
    • X.R. Gu, K. Nicoghosian, R.J. Cedergren, and J.T. Wong Sequences of halobacterial tRNAs and the paucity of U in the first position of their anticodons Nucl. Acids Res. 11 1983 5433 5442
    • (1983) Nucl. Acids Res. , vol.11 , pp. 5433-5442
    • Gu, X.R.1    Nicoghosian, K.2    Cedergren, R.J.3    Wong, J.T.4
  • 10
    • 0022368898 scopus 로고
    • Halobacterium cutirubrum tRNA sequences
    • K. Nicoghosian, X.R. Gu, and R. Cedergren Halobacterium cutirubrum tRNA sequences FEBS Letters 193 1985 257 260
    • (1985) FEBS Letters , vol.193 , pp. 257-260
    • Nicoghosian, K.1    Gu, X.R.2    Cedergren, R.3
  • 13
    • 0028988341 scopus 로고
    • 2-dimethylguanosine in eukaryotic tRNA: Importance of the tRNA architecture
    • 2-dimethylguanosine in eukaryotic tRNA: importance of the tRNA architecture Biochimie 77 1995 54 61
    • (1995) Biochimie , vol.77 , pp. 54-61
    • Edqvist, J.1    Straby, K.B.2    Grosjean, H.3
  • 14
    • 0025039614 scopus 로고
    • Guanosine modifications in runoff transcripts of synthetic transfer RNA-Phe genes microinjected into Xenopus oocytes
    • H. Grosjean, L. Droogmans, R. Giege, and O.C. Uhlenbeck Guanosine modifications in runoff transcripts of synthetic transfer RNA-Phe genes microinjected into Xenopus oocytes Biochim. Biophys. Acta 1050 1990 267 273
    • (1990) Biochim. Biophys. Acta , vol.1050 , pp. 267-273
    • Grosjean, H.1    Droogmans, L.2    Giege, R.3    Uhlenbeck, O.C.4
  • 16
    • 0027935988 scopus 로고
    • Structural elements in yeast tRNAs required for homologous modification of guanosine-26 into dimethylguanosine-26 by the yeast Trm1 tRNA-modifying enzyme
    • J. Edqvist, K. Blomqvist, and K.B. Straby Structural elements in yeast tRNAs required for homologous modification of guanosine-26 into dimethylguanosine-26 by the yeast Trm1 tRNA-modifying enzyme Biochemistry 33 1994 9546 9551
    • (1994) Biochemistry , vol.33 , pp. 9546-9551
    • Edqvist, J.1    Blomqvist, K.2    Straby, K.B.3
  • 17
    • 0016693903 scopus 로고
    • 2 -dimethylguanylate when "fully sequenced" homogeneous species of transfer RNA are used as substrates for wheat embryo methyltransferases
    • 2 -dimethylguanylate when "fully sequenced" homogeneous species of transfer RNA are used as substrates for wheat embryo methyltransferases Can. J. Biochem. 53 1975 690 697
    • (1975) Can. J. Biochem. , vol.53 , pp. 690-697
    • Kwong, T.C.1    Lane, B.G.2
  • 18
    • 0015982013 scopus 로고
    • Sites of methylation of purified transfer ribonucleic acid preparations by enzymes from normal tissues and from tumours induced by dimethylnitrosamine and 1,2-dimethylhydrazine
    • A.E. Pegg Sites of methylation of purified transfer ribonucleic acid preparations by enzymes from normal tissues and from tumours induced by dimethylnitrosamine and 1,2-dimethylhydrazine Biochem. J. 137 1974 239 248
    • (1974) Biochem. J. , vol.137 , pp. 239-248
    • Pegg, A.E.1
  • 20
    • 4344606710 scopus 로고    scopus 로고
    • 2-methylation of guanosine at position 10 in tRNA is catalyzed by a THUMP domain-containing, S-adenosylmethionine-dependent methyltransferase, conserved in Archaea and Eukaryota
    • 2-methylation of guanosine at position 10 in tRNA is catalyzed by a THUMP domain-containing, S-adenosylmethionine- dependent methyltransferase, conserved in Archaea and Eukaryota J. Biol. Chem. 279 2004 37142 37152
    • (2004) J. Biol. Chem. , vol.279 , pp. 37142-37152
    • Armengaud, J.1    Urbonavicius, J.2    Fernandez, B.3    Chaussinand, G.4    Bujnicki, J.M.5    Grosjean, H.6
  • 21
    • 0036792830 scopus 로고    scopus 로고
    • TRNomics: Analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features
    • C. Marck, and H. Grosjean tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features RNA 8 2002 1189 1232
    • (2002) RNA , vol.8 , pp. 1189-1232
    • Marck, C.1    Grosjean, H.2
  • 22
    • 0029966338 scopus 로고    scopus 로고
    • Enzymatic formation of modified nucleosides in tRNA: Dependence on tRNA architecture
    • H. Grosjean, J. Edqvist, K.B. Straby, and R. Giege Enzymatic formation of modified nucleosides in tRNA: dependence on tRNA architecture J. Mol. Biol. 255 1996 67 85
    • (1996) J. Mol. Biol. , vol.255 , pp. 67-85
    • Grosjean, H.1    Edqvist, J.2    Straby, K.B.3    Giege, R.4
  • 24
    • 0032542064 scopus 로고    scopus 로고
    • Conformational transitions of an unmodified tRNA: Implications for RNA folding
    • E.J. Maglott, S.S. Deo, A. Przykorska, and G.D. Glick Conformational transitions of an unmodified tRNA: implications for RNA folding Biochemistry 37 1998 16349 16359
    • (1998) Biochemistry , vol.37 , pp. 16349-16359
    • Maglott, E.J.1    Deo, S.S.2    Przykorska, A.3    Glick, G.D.4
  • 25
    • 0025614348 scopus 로고
    • Conformation in solution of yeast tRNA(Asp) transcripts deprived of modified nucleotides
    • V. Perret, A. Garcia, J. Puglisi, H. Grosjean, J.P. Ebel, C. Florentz, and R. Giege Conformation in solution of yeast tRNA(Asp) transcripts deprived of modified nucleotides Biochimie 72 1990 735 743
    • (1990) Biochimie , vol.72 , pp. 735-743
    • Perret, V.1    Garcia, A.2    Puglisi, J.3    Grosjean, H.4    Ebel, J.P.5    Florentz, C.6    Giege, R.7
  • 26
    • 0001968230 scopus 로고
    • Primary, secondary, and tertiary structures of tRNAs
    • D. Soll U.L. RajBandary ASM Press Washington, DC
    • G. Dirheimer, G. Keith, P.. Dumas, and E. Westhof Primary, secondary, and tertiary structures of tRNAs D.. Soll U.L. RajBandary tRNA: Structure, Biogenesis, and Function 1995 ASM Press Washington, DC 93 126
    • (1995) TRNA: Structure, Biogenesis, and Function , pp. 93-126
    • Dirheimer, G.1    Keith, G.2    Dumas, P.3    Westhof, E.4
  • 28
    • 0036529621 scopus 로고    scopus 로고
    • Comparative genomics and evolution of proteins involved in RNA metabolism
    • V. Anantharaman, E.V. Koonin, and L. Aravind Comparative genomics and evolution of proteins involved in RNA metabolism Nucl. Acids Res. 30 2002 1427 1464
    • (2002) Nucl. Acids Res. , vol.30 , pp. 1427-1464
    • Anantharaman, V.1    Koonin, E.V.2    Aravind, L.3
  • 29
    • 3042731061 scopus 로고    scopus 로고
    • Bioinformatics-guided identification and experimental characterization of novel RNA methyltransferases
    • J.M. Bujnicki Springer Berlin
    • J.M. Bujnicki, L. Droogmans, H. Grosjean, S.K. Purushothaman, and B. Lapeyre Bioinformatics-guided identification and experimental characterization of novel RNA methyltransferases J.M. Bujnicki Practical Bioinformatics 2004 Springer Berlin 139 168
    • (2004) Practical Bioinformatics , pp. 139-168
    • Bujnicki, J.M.1    Droogmans, L.2    Grosjean, H.3    Purushothaman, S.K.4    Lapeyre, B.5
  • 30
    • 33344473452 scopus 로고    scopus 로고
    • Finding missing tRNA modification genes: A comparative genomics goldmine
    • J.M. Bujnicki Springer Berlin
    • V. De Crécy-Lagard Finding missing tRNA modification genes: a comparative genomics goldmine J.M. Bujnicki Practical Bioinformatics 2004 Springer Berlin 169 190
    • (2004) Practical Bioinformatics , pp. 169-190
    • De Crécy-Lagard, V.1
  • 31
    • 20044375499 scopus 로고    scopus 로고
    • Transfer RNA modification
    • R. Curtiss III A. Bock J.L. Ingrahan J.B. Kaper S. Maloy F.C. Neidhardt ASM Press Washington, DC*et al.
    • G.R. Bjork, and T.G. Hagervall Transfer RNA modification R. Curtiss III A. Bock J.L. Ingrahan J.B. Kaper S. Maloy F.C. Neidhardt Escherichia coli and Salmonella 2005 ASM Press Washington, DC
    • (2005) Escherichia Coli and Salmonella
    • Bjork, G.R.1    Hagervall, T.G.2
  • 32
    • 33344474405 scopus 로고    scopus 로고
    • Fine-tuning of RNA functions by modification and editing
    • S. Hohmann Springer Berlin
    • H. Grosjean Fine-tuning of RNA functions by modification and editing S. Hohmann Topics in Current Genetics vol. 12 2005 Springer Berlin
    • (2005) Topics in Current Genetics , vol.12
    • Grosjean, H.1
  • 33
    • 0016044321 scopus 로고
    • Three-dimensional structure of yeast phenylalanine transfer RNA at 3.0 Angstroms resolution
    • F.L. Suddath, G.J. Quigley, A. McPherson, D. Sneden, J.J. Kim, S.H. Kim, and A. Rich Three-dimensional structure of yeast phenylalanine transfer RNA at 3.0 Angstroms resolution Nature 248 1974 20 24
    • (1974) Nature , vol.248 , pp. 20-24
    • Suddath, F.L.1    Quigley, G.J.2    McPherson, A.3    Sneden, D.4    Kim, J.J.5    Kim, S.H.6    Rich, A.7
  • 36
    • 0029808124 scopus 로고    scopus 로고
    • A role for the bulged nucleotide 47 in the facilitation of tertiary interactions in the tRNA structure
    • S. Steinberg, and A. Ioudovitch A role for the bulged nucleotide 47 in the facilitation of tertiary interactions in the tRNA structure RNA 2 1996 84 87
    • (1996) RNA , vol.2 , pp. 84-87
    • Steinberg, S.1    Ioudovitch, A.2
  • 37
    • 0029400768 scopus 로고
    • 2-dimethylguanosine presence and alternate tRNA conformers
    • 2-dimethylguanosine presence and alternate tRNA conformers RNA 1 1995 886 891
    • (1995) RNA , vol.1 , pp. 886-891
    • Steinberg, S.1    Cedergren, R.2
  • 38
    • 0032529298 scopus 로고    scopus 로고
    • 2-methylguanosine is iso-energetic with guanosine in RNA duplexes and GNRA tetraloops
    • 2- methylguanosine is iso-energetic with guanosine in RNA duplexes and GNRA tetraloops Nucl. Acids Res. 26 1998 3640 3644
    • (1998) Nucl. Acids Res. , vol.26 , pp. 3640-3644
    • Rife, J.P.1    Cheng, C.S.2    Moore, P.B.3    Strobel, S.A.4
  • 41
    • 0033735040 scopus 로고    scopus 로고
    • Search for characteristic structural features of mammalian mitochondrial tRNAs
    • M. Helm, H. Brule, D. Friede, R. Giege, D. Putz, and C. Florentz Search for characteristic structural features of mammalian mitochondrial tRNAs RNA 6 2000 1356 1379
    • (2000) RNA , vol.6 , pp. 1356-1379
    • Helm, M.1    Brule, H.2    Friede, D.3    Giege, R.4    Putz, D.5    Florentz, C.6
  • 42
    • 18944364447 scopus 로고    scopus 로고
    • Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA
    • S.K. Purushothaman, J.M. Bujnicki, H. Grosjean, and B. Lapeyre Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA Mol. Cell. Biol. 25 2005 4359 4370
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 4359-4370
    • Purushothaman, S.K.1    Bujnicki, J.M.2    Grosjean, H.3    Lapeyre, B.4
  • 43
    • 0011895723 scopus 로고    scopus 로고
    • Mechanism, specificity and general properties of the yeast enzyme catalysing the formation of inosine 34 in the anticodon of transfer RNA
    • S. Auxilien, P.F. Crain, R.W. Trewyn, and H. Grosjean Mechanism, specificity and general properties of the yeast enzyme catalysing the formation of inosine 34 in the anticodon of transfer RNA J. Mol. Biol. 262 1996 437 458
    • (1996) J. Mol. Biol. , vol.262 , pp. 437-458
    • Auxilien, S.1    Crain, P.F.2    Trewyn, R.W.3    Grosjean, H.4
  • 44
    • 3142766402 scopus 로고    scopus 로고
    • Detection and quantification of modified nucleotides in RNA using thin-layer chromatography
    • H. Grosjean, G. Keith, and L. Droogmans Detection and quantification of modified nucleotides in RNA using thin-layer chromatography Methods Mol. Biol. 265 2004 357 391
    • (2004) Methods Mol. Biol. , vol.265 , pp. 357-391
    • Grosjean, H.1    Keith, G.2    Droogmans, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.