-
2
-
-
0030811295
-
Interaction of tRNA with tRNA (guanosine-1)methyltransferase: Binding specificity determinants involve the dinucleotide G36pG37 and tertiary structure
-
Redlak M., Andraos-Selim C., Giege R., Florentz C., Holmes W.M. Interaction of tRNA with tRNA (guanosine-1)methyltransferase: binding specificity determinants involve the dinucleotide G36pG37 and tertiary structure. Biochemistry. 36:1997;8699-8709.
-
(1997)
Biochemistry
, vol.36
, pp. 8699-8709
-
-
Redlak, M.1
Andraos-Selim, C.2
Giege, R.3
Florentz, C.4
Holmes, W.M.5
-
3
-
-
0344923796
-
Structural alterations of the tRNA(m1G37)methyltransferase from Salmonella typhimurium affect tRNA substrate specificity
-
Li J.N., Bjork G.R. Structural alterations of the tRNA(m1G37) methyltransferase from Salmonella typhimurium affect tRNA substrate specificity. RNA. 5:1999;395-408.
-
(1999)
RNA
, vol.5
, pp. 395-408
-
-
Li, J.N.1
Bjork, G.R.2
-
5
-
-
0026690885
-
Structural requirements for tRNA methylation. Action of Escherichia coli tRNA(guanosine-1)methyltransferase on tRNA(1Leu) structural variants
-
Holmes W.M., Andraos-Selim C., Roberts I., Wahab S.Z. Structural requirements for tRNA methylation. Action of Escherichia coli tRNA(guanosine-1)methyltransferase on tRNA(1Leu) structural variants. J. Biol. Chem. 267:1992;13440-13445.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 13440-13445
-
-
Holmes, W.M.1
Andraos-Selim, C.2
Roberts, I.3
Wahab, S.Z.4
-
6
-
-
0030678555
-
TRNA recognition for modification: Solution probing of tRNA complexed with Escherichia coli tRNA (guanosine-1) methyltransferase
-
Gabryszuk J., Holmes W.M. tRNA recognition for modification: solution probing of tRNA complexed with Escherichia coli tRNA (guanosine-1) methyltransferase. RNA. 3:1997;1327-1336.
-
(1997)
RNA
, vol.3
, pp. 1327-1336
-
-
Gabryszuk, J.1
Holmes, W.M.2
-
7
-
-
0035883736
-
AdoMet-dependent methylation, DNA methyltransferases and base flipping
-
Cheng X., Roberts R.J. AdoMet-dependent methylation, DNA methyltransferases and base flipping. Nucl. Acids Res. 29:2001;3784-3795.
-
(2001)
Nucl. Acids Res.
, vol.29
, pp. 3784-3795
-
-
Cheng, X.1
Roberts, R.J.2
-
8
-
-
0036917889
-
SAM (dependent) I AM: The S-adenosylmethionine-dependent methyltransferase fold
-
Martin J.L., McMillan F.M. SAM (dependent) I AM: the S- adenosylmethionine-dependent methyltransferase fold. Curr. Opin. Struct. Biol. 12:2002;783-793.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 783-793
-
-
Martin, J.L.1
McMillan, F.M.2
-
9
-
-
0036132209
-
SPOUT: A class of methyltransferases that includes spoU and trmD RNA methylase superfamilies, and novel superfamilies of predicted prokaryotic RNA methylases
-
Anantharaman V., Koonin E.V., Aravind L. SPOUT: a class of methyltransferases that includes spoU and trmD RNA methylase superfamilies, and novel superfamilies of predicted prokaryotic RNA methylases. J. Mol. Microbiol. Biotechnol. 4:2002;71-75.
-
(2002)
J. Mol. Microbiol. Biotechnol.
, vol.4
, pp. 71-75
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
10
-
-
0036774065
-
The structure of the RlmB 23 S rRNA methyltransferase reveals a new methyltransferase fold with a unique knot
-
Michel G., Sauve V., Larocque R., Li Y., Matte A., Cygler M. The structure of the RlmB 23 S rRNA methyltransferase reveals a new methyltransferase fold with a unique knot. Structure (Camb). 10:2002;1303-1315.
-
(2002)
Structure (Camb)
, vol.10
, pp. 1303-1315
-
-
Michel, G.1
Sauve, V.2
Larocque, R.3
Li, Y.4
Matte, A.5
Cygler, M.6
-
11
-
-
0035997122
-
An enzyme with a deep trefoil knot for the active-site architecture
-
Nureki O., Shirouzu M., Hashimoto K., Ishitani R., Terada T., Tamakoshi M., et al. An enzyme with a deep trefoil knot for the active-site architecture. Acta Crystallog. sect. D. 58:2002;1129-1137.
-
(2002)
Acta Crystallog. sect. D
, vol.58
, pp. 1129-1137
-
-
Nureki, O.1
Shirouzu, M.2
Hashimoto, K.3
Ishitani, R.4
Terada, T.5
Tamakoshi, M.6
-
12
-
-
0037375572
-
Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): A cofactor bound at a site formed by a knot
-
Lim K., Zhang H., Tempczyk A., Krajewski W., Bonander N., Toedt J., et al. Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): a cofactor bound at a site formed by a knot. Proteins: Struct. Funct. Genet. 51:2003;56-67.
-
(2003)
Proteins: Struct. Funct. Genet.
, vol.51
, pp. 56-67
-
-
Lim, K.1
Zhang, H.2
Tempczyk, A.3
Krajewski, W.4
Bonander, N.5
Toedt, J.6
-
13
-
-
0037297693
-
Deep trefoil knot implicated in RNA binding found in an archaebacterial protein
-
Zarembinski T.I., Kim Y., Peterson K., Christendat D., Dharamsi A., Arrowsmith C.H., et al. Deep trefoil knot implicated in RNA binding found in an archaebacterial protein. Proteins: Struct. Funct. Genet. 50:2003;177-183.
-
(2003)
Proteins: Struct. Funct. Genet.
, vol.50
, pp. 177-183
-
-
Zarembinski, T.I.1
Kim, Y.2
Peterson, K.3
Christendat, D.4
Dharamsi, A.5
Arrowsmith, C.H.6
-
14
-
-
0036829013
-
The active site of the SET domain is constructed on a knot
-
Jacobs S.A., Harp J.M., Devarakonda S., Kim Y., Rastinejad F., Khorasanizadeh S. The active site of the SET domain is constructed on a knot. Nature Struct. Biol. 9:2002;833-838.
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 833-838
-
-
Jacobs, S.A.1
Harp, J.M.2
Devarakonda, S.3
Kim, Y.4
Rastinejad, F.5
Khorasanizadeh, S.6
-
15
-
-
0037526102
-
Crystal structure of tRNA(m1G37)methyltransferase: Insights into tRNA recognition
-
Ahn H.J., Kim H.W., Yoon H.J., Lee B.I., Suh S.W., Yang J.K. Crystal structure of tRNA(m1G37)methyltransferase: insights into tRNA recognition. EMBO J. 22:2003;2593-2603.
-
(2003)
EMBO J.
, vol.22
, pp. 2593-2603
-
-
Ahn, H.J.1
Kim, H.W.2
Yoon, H.J.3
Lee, B.I.4
Suh, S.W.5
Yang, J.K.6
-
16
-
-
0029897830
-
Purification, crystallization, and preliminary X-ray diffraction studies of tRNA-guanine transglycosylase from Zymomonas mobilis
-
Romier C., Ficner R., Reuter K., Suck D. Purification, crystallization, and preliminary X-ray diffraction studies of tRNA-guanine transglycosylase from Zymomonas mobilis. Proteins: Struct. Funct. Genet. 24:1996;516-519.
-
(1996)
Proteins: Struct. Funct. Genet.
, vol.24
, pp. 516-519
-
-
Romier, C.1
Ficner, R.2
Reuter, K.3
Suck, D.4
-
17
-
-
0035966271
-
Cocrystal structure of a tRNA Psi55 pseudouridine synthase: Nucleotide flipping by an RNA-modifying enzyme
-
Hoang C., Ferre-D'Amare A.R. Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme. Cell. 107:2001;929-939.
-
(2001)
Cell
, vol.107
, pp. 929-939
-
-
Hoang, C.1
Ferre-D'Amare, A.R.2
-
18
-
-
0038613099
-
Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme
-
Ishitani R., Nureki O., Nameki N., Okada N., Nishimura S., Yokoyama S. Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme. Cell. 113:2003;383-394.
-
(2003)
Cell
, vol.113
, pp. 383-394
-
-
Ishitani, R.1
Nureki, O.2
Nameki, N.3
Okada, N.4
Nishimura, S.5
Yokoyama, S.6
-
19
-
-
0023644998
-
Structure of the C-terminal domain of the ribosomal protein L7/L12 from Escherichia coli at 1.7 Å
-
Leijonmarck M., Liljas A. Structure of the C-terminal domain of the ribosomal protein L7/L12 from Escherichia coli at 1.7 Å J. Mol. Biol. 195:1987;555-579.
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 555-579
-
-
Leijonmarck, M.1
Liljas, A.2
-
20
-
-
0033578955
-
Local folding coupled to RNA binding in the yeast ribosomal protein L30
-
Mao H., Williamson J.R. Local folding coupled to RNA binding in the yeast ribosomal protein L30. J. Mol. Biol. 292:1999;345-359.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 345-359
-
-
Mao, H.1
Williamson, J.R.2
-
21
-
-
0042736455
-
Mutational analysis defines the roles of conserved amino acid residues in the predicted catalytic pocket of the rRNA:m6A methyltransferase ErmC′
-
Maravic G., Feder M., Pongor S., Flogel M., Bujnicki J.M. Mutational analysis defines the roles of conserved amino acid residues in the predicted catalytic pocket of the rRNA:m6A methyltransferase ErmC′ J. Mol. Biol. 332:2003;99-109.
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 99-109
-
-
Maravic, G.1
Feder, M.2
Pongor, S.3
Flogel, M.4
Bujnicki, J.M.5
-
22
-
-
0142138438
-
Alanine-scanning mutagenesis of the predicted rRNA-binding domain of ErmC′ redefines the substrate-binding site and suggests a model for protein-RNA interactions
-
Maravic G., Bujnicki J.M., Feder M., Pongor S., Flogel M. Alanine-scanning mutagenesis of the predicted rRNA-binding domain of ErmC′ redefines the substrate-binding site and suggests a model for protein-RNA interactions. Nucl. Acids Res. 31:2003;4941-4949.
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 4941-4949
-
-
Maravic, G.1
Bujnicki, J.M.2
Feder, M.3
Pongor, S.4
Flogel, M.5
-
23
-
-
0031059866
-
-
Carter, C. W. Jr & Sweet, R. M., eds.), Academic Press, New York
-
Otwinowski, Z. & Minor, W. (1992). Processing of X-ray Diffraction Data Collected in Oscillation Mode, Methods in Enzymology, Volume 276: Macromolecular Crystallography (Carter, C. W. Jr & Sweet, R. M., eds.), part A, pp. 307-326, Academic Press, New York.
-
(1992)
Processing of X-ray Diffraction Data Collected in Oscillation Mode, Methods in Enzymology, Volume 276: Macromolecular Crystallography
, vol.276
, Issue.PART A
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
26
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallog. sect. A. 47:1991;110-119.
-
(1991)
Acta Crystallog. sect. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
27
-
-
0030729838
-
An extensively modified version of MolScript that includes greatly enhanced coloring capabilities
-
132-4
-
Esnouf R.M. An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J. Mol. Graph. Model. 15:1997;. 112-3, 132-4.
-
(1997)
J. Mol. Graph. Model.
, vol.15
, pp. 112-113
-
-
Esnouf, R.M.1
-
28
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis P.J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24:1991;946-950.
-
(1991)
J. Appl. Crystallog.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
29
-
-
0030815133
-
Raster3D photorealistic molecular graphics
-
Merritt E.A., Bacon D.J. Raster3D photorealistic molecular graphics. Methods Enzymol. 277:1997;505-524.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
-
30
-
-
0028057108
-
Raster3D version 2.0. A program for photorealistic molecular graphics
-
Merritt E.A.M., Murphy M.E.P. Raster3D version 2.0. A program for photorealistic molecular graphics. Acta Crystallog. sect. D. 50:1994;869-873.
-
(1994)
Acta Crystallog. sect. D
, vol.50
, pp. 869-873
-
-
Merritt, E.A.M.1
Murphy, M.E.P.2
-
31
-
-
0142169168
-
Examining and manipulating molecular surfaces: Generation and manipulation of solid models with the MOLCAD molecular graphics system
-
Brickmann J.G.T., Heiden W., Waldherr-Techner M. Examining and manipulating molecular surfaces: generation and manipulation of solid models with the MOLCAD molecular graphics system. J. Mol. Graph. 10:1992;35.
-
(1992)
J. Mol. Graph.
, vol.10
, pp. 35
-
-
Brickmann, J.G.T.1
Heiden, W.2
Waldherr-Techner, M.3
-
32
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 25:1997;3389-3402.
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
33
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22:1994;4673-4680.
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
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