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Volumn 4, Issue 9, 2008, Pages

Screening and replication using the same data set: Testing strategies for family-based studies in which all probands are affected

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ASTHMA; BONFERRONI CORRECTION; CALCULATION; CHILD; DATA ANALYSIS; EFFECT SIZE; FAMILY BASED ASSOCIATION TRANSMISSION DISEQUILIBRIUM TEST; FAMILY STUDY; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC ASSOCIATION; GENETIC MARKER; GENETIC SCREENING; GENOTYPE; HEREDITY; HUMAN; MAJOR CLINICAL STUDY; MATHEMATICAL ANALYSIS; METHODOLOGY; NUCLEOTIDE SEQUENCE; PARENT; PROGENY; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; BIOLOGICAL MODEL; COMPUTER SIMULATION; FAMILY; FEMALE; GENETICS; GENOME; MALE; MEDICAL GENETICS; PEDIGREE; POPULATION GENETICS; QUANTITATIVE TRAIT; STATISTICAL MODEL;

EID: 52949101735     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1000197     Document Type: Article
Times cited : (25)

References (37)
  • 1
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • The International HapMap Consortium
    • The International HapMap Consortium (2005) A haplotype map of the human genome. Nature 427: 1299-1320.
    • (2005) Nature , vol.427 , pp. 1299-1320
  • 2
    • 41549105745 scopus 로고    scopus 로고
    • The international hapmap consortium: A second generation human haplotype map of over 3.1 million snps
    • The International HapMap Consortium
    • The International HapMap Consortium (2007) The international hapmap consortium: A second generation human haplotype map of over 3.1 million snps. Nature 449: 851-861.
    • (2007) Nature , vol.449 , pp. 851-861
  • 3
    • 20844455582 scopus 로고    scopus 로고
    • Genotyping over 100,000 snps on a pair of oligonucleotide arrays
    • Matsuzaki H, Dong S, Loi H, Di X, Liu G, et al. (2004) Genotyping over 100,000 snps on a pair of oligonucleotide arrays. Nat Meth 11: 109-11.
    • (2004) Nat Meth , vol.11 , pp. 109-111
    • Matsuzaki, H.1    Dong, S.2    Loi, H.3    Di, X.4    Liu, G.5
  • 4
    • 20844440702 scopus 로고    scopus 로고
    • Dynamic model based algorithms for screening and genotyping over 100 k snps on oligonucleotide microarrays
    • Di X, Matsuzaki H, Webster TA, Hubbell E, Liu G, et al. (2005) Dynamic model based algorithms for screening and genotyping over 100 k snps on oligonucleotide microarrays. Bioinf 21: 1958-63.
    • (2005) Bioinf , vol.21 , pp. 1958-1963
    • Di, X.1    Matsuzaki, H.2    Webster, T.A.3    Hubbell, E.4    Liu, G.5
  • 6
    • 33751094810 scopus 로고    scopus 로고
    • The chips are down
    • Wadma M (2006) The chips are down. Nature Digest 444: 256-7.
    • (2006) Nature Digest , vol.444 , pp. 256-257
    • Wadma, M.1
  • 8
    • 22844449221 scopus 로고    scopus 로고
    • Genomic screening and replication using the same data set in family-based association testing
    • Van Steen K, McQueen MB, Herbert A, Raby B, Lyon H, et al. (2005b) Genomic screening and replication using the same data set in family-based association testing. Nat Genet 37: 683-691.
    • (2005) Nat Genet , vol.37 , pp. 683-691
    • Van Steen, K.1    McQueen, M.B.2    Herbert, A.3    Raby, B.4    Lyon, H.5
  • 9
    • 34548261853 scopus 로고    scopus 로고
    • Genomewide weighted hypothesis testing in family-based association studies, with an application to a 100 k scan
    • Ionita-Laza I, McQueen MB, Laird NM, Lange C (2007) Genomewide weighted hypothesis testing in family-based association studies, with an application to a 100 k scan. Am J Hum Genet 81: 607-14.
    • (2007) Am J Hum Genet , vol.81 , pp. 607-614
    • Ionita-Laza, I.1    McQueen, M.B.2    Laird, N.M.3    Lange, C.4
  • 10
    • 35548959623 scopus 로고    scopus 로고
    • Two-stage association tests for genome-wide association studies based on family data with arbitrary family structure
    • Feng T, Zhang S, Sha Q (2007) Two-stage association tests for genome-wide association studies based on family data with arbitrary family structure. Eur J of Hum Genet 15: 1169-75.
    • (2007) Eur J of Hum Genet , vol.15 , pp. 1169-1175
    • Feng, T.1    Zhang, S.2    Sha, Q.3
  • 11
    • 33947428419 scopus 로고    scopus 로고
    • Adaptive Two-Stage Analysis of Genetic Association in Case-Control Designs
    • Zheng G, Song K, Elston RC (2007) Adaptive Two-Stage Analysis of Genetic Association in Case-Control Designs. Hum Hered 63: 175-186.
    • (2007) Hum Hered , vol.63 , pp. 175-186
    • Zheng, G.1    Song, K.2    Elston, R.C.3
  • 12
    • 9344224529 scopus 로고    scopus 로고
    • A novel MHC class I-like gene is mutated in patients with hereditary haemochromatosis
    • Feder JN, Gnirke A, Thomas W, Tsuchihasi Z (1996) A novel MHC class I-like gene is mutated in patients with hereditary haemochromatosis. Nat Genet 12: 399-408.
    • (1996) Nat Genet , vol.12 , pp. 399-408
    • Feder, J.N.1    Gnirke, A.2    Thomas, W.3    Tsuchihasi, Z.4
  • 13
    • 0032231375 scopus 로고    scopus 로고
    • Detecting marker-disease association by testing for hardy-weinberg disequilibrium at a marker locus
    • Nielsen DM, Ehm MG, Weir BS (1998) Detecting marker-disease association by testing for hardy-weinberg disequilibrium at a marker locus. Amer J Hum Genet 63: 1531-40.
    • (1998) Amer J Hum Genet , vol.63 , pp. 1531-1540
    • Nielsen, D.M.1    Ehm, M.G.2    Weir, B.S.3
  • 14
    • 0347604255 scopus 로고    scopus 로고
    • Tests for a disease-susceptibility locus allowing for an inbreeding coefficient
    • Song K, Elston RC (2003) Tests for a disease-susceptibility locus allowing for an inbreeding coefficient. Genetica 119: 269-81.
    • (2003) Genetica , vol.119 , pp. 269-281
    • Song, K.1    Elston, R.C.2
  • 15
    • 0142122910 scopus 로고    scopus 로고
    • Using the noninformative families in family-based association tests: A powerful new testing strategy
    • Lange C, DeMeo D, Silverman EK, Weiss S, Laird NM (2003b) Using the noninformative families in family-based association tests: A powerful new testing strategy. Am J Hum Genet 79: 801-811.
    • (2003) Am J Hum Genet , vol.79 , pp. 801-811
    • Lange, C.1    DeMeo, D.2    Silverman, E.K.3    Weiss, S.4    Laird, N.M.5
  • 16
    • 0345257865 scopus 로고    scopus 로고
    • A new powerful non-parametric two-stage approach for testing multiple phenotypes in family-based association studies
    • Lange C, Lyon H, DeMeo D, Raby B, Silverman E, et al. (2003c) A new powerful non-parametric two-stage approach for testing multiple phenotypes in family-based association studies. Human Heredity 56: 10-17.
    • (2003) Human Heredity , vol.56 , pp. 10-17
    • Lange, C.1    Lyon, H.2    DeMeo, D.3    Raby, B.4    Silverman, E.5
  • 17
    • 0142121519 scopus 로고    scopus 로고
    • A multivariate family-based association test using generalized estimating equations: FBAT-GEE
    • Lange C, Silverman EK, Xu X, Weiss S, Laird NM (2003a) A multivariate family-based association test using generalized estimating equations: FBAT-GEE. Biostat 4: 195-206.
    • (2003) Biostat , vol.4 , pp. 195-206
    • Lange, C.1    Silverman, E.K.2    Xu, X.3    Weiss, S.4    Laird, N.M.5
  • 18
    • 0034054165 scopus 로고    scopus 로고
    • A unified approach to adjusting association tests for population admixture with arbitrary pedigree structure and arbitrary missing marker information
    • Rabinowitz D, Laird NM (2000) A unified approach to adjusting association tests for population admixture with arbitrary pedigree structure and arbitrary missing marker information. Hum Hered 50: 211-223.
    • (2000) Hum Hered , vol.50 , pp. 211-223
    • Rabinowitz, D.1    Laird, N.M.2
  • 19
    • 0033814928 scopus 로고    scopus 로고
    • Implementing a unified approach to family based tests of association
    • Laird NM, Horvath S, Xu X (2000) Implementing a unified approach to family based tests of association. Genet Epi 19: S36-S42.
    • (2000) Genet Epi , vol.19
    • Laird, N.M.1    Horvath, S.2    Xu, X.3
  • 20
    • 0027377799 scopus 로고
    • Transmisson test for linkage disequilibrium: The insulin gene region and insulin-dependent diabetes mellitus (IDDm)
    • Spielman RS, McGinnis RE, Ewens WJ (1993) Transmisson test for linkage disequilibrium: The insulin gene region and insulin-dependent diabetes mellitus (IDDm). Am J Hum Genet 52: 506-516.
    • (1993) Am J Hum Genet , vol.52 , pp. 506-516
    • Spielman, R.S.1    McGinnis, R.E.2    Ewens, W.J.3
  • 21
    • 33646188852 scopus 로고    scopus 로고
    • Family-based designs in the age of large-scale gene-association studies
    • Laird NM, Lange C (2006) Family-based designs in the age of large-scale gene-association studies. Nat Rev 7: 385-394.
    • (2006) Nat Rev , vol.7 , pp. 385-394
    • Laird, N.M.1    Lange, C.2
  • 22
    • 0036668724 scopus 로고    scopus 로고
    • On a general class of conditional tests for family-based association studies in genetics: The asymptotic distribution, the conditional power and optimality considerations
    • Lange C, Laird NM (2002a) On a general class of conditional tests for family-based association studies in genetics: the asymptotic distribution, the conditional power and optimality considerations. Genet Epi 23: 165-180.
    • (2002) Genet Epi , vol.23 , pp. 165-180
    • Lange, C.1    Laird, N.M.2
  • 23
    • 32044468121 scopus 로고    scopus 로고
    • Family-based association test for time-to-onset data with time-dependent differences between the hazard functions
    • Jiang H, Harrington D, Raby BA, Bertram L, Blacker D, et al. (2006) Family-based association test for time-to-onset data with time-dependent differences between the hazard functions. Genet Epi 30: 124-32.
    • (2006) Genet Epi , vol.30 , pp. 124-132
    • Jiang, H.1    Harrington, D.2    Raby, B.A.3    Bertram, L.4    Blacker, D.5
  • 24
    • 0036724540 scopus 로고    scopus 로고
    • Analytical sample size and power calculations for a general class of family-based association tests: Dichotomous traits
    • Lange C, Laird NM (2002b) Analytical sample size and power calculations for a general class of family-based association tests: Dichotomous traits. Am J Hum Genet 71: 575-584.
    • (2002) Am J Hum Genet , vol.71 , pp. 575-584
    • Lange, C.1    Laird, N.M.2
  • 26
    • 0033358557 scopus 로고    scopus 로고
    • A note on power approximations for the transmission/ disequilibrium test
    • Knapp M (1999) A note on power approximations for the transmission/ disequilibrium test. Am J Hum Genet 64: 1177-1185.
    • (1999) Am J Hum Genet , vol.64 , pp. 1177-1185
    • Knapp, M.1
  • 27
    • 23044515462 scopus 로고    scopus 로고
    • The estimation of heritability for twin data based on concordances of sex and disease
    • Tan H, Walker M, Gagnon F, Wen SW (2005) The estimation of heritability for twin data based on concordances of sex and disease. Chronic Dis Can 26: 9-12.
    • (2005) Chronic Dis Can , vol.26 , pp. 9-12
    • Tan, H.1    Walker, M.2    Gagnon, F.3    Wen, S.W.4
  • 28
    • 0035513659 scopus 로고    scopus 로고
    • Genes and environment in asthma: A study of 4 year old twins
    • Koeppen-Schomerus G, Stevenson J, R P (2001) Genes and environment in asthma: a study of 4 year old twins. Arch Dis Child 85: 398-400.
    • (2001) Arch Dis Child , vol.85 , pp. 398-400
    • Koeppen-Schomerus, G.1    Stevenson, J.R.P.2
  • 29
    • 0035083143 scopus 로고    scopus 로고
    • Genome-wide linkage analyses of total serum IgE using variance components analysis in asthmatic families
    • Mathias RA, Freidhoff LR, Blumenthal MN, Meyers DA, Lester L, et al. (2001) Genome-wide linkage analyses of total serum IgE using variance components analysis in asthmatic families. Genet Epi 20: 340-55.
    • (2001) Genet Epi , vol.20 , pp. 340-355
    • Mathias, R.A.1    Freidhoff, L.R.2    Blumenthal, M.N.3    Meyers, D.A.4    Lester, L.5
  • 31
    • 0033012176 scopus 로고    scopus 로고
    • The childhood asthma management program (CAMP): Design, rationale, and methods. childhood asthma management program research group
    • CAMP
    • CAMP (1999) The childhood asthma management program (CAMP): design, rationale, and methods. childhood asthma management program research group. Control Clin Trials 20: 91-120.
    • (1999) Control Clin Trials , vol.20 , pp. 91-120
  • 32
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J Royal Stat Soc B 57: 289-300.
    • (1995) J Royal Stat Soc B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 33
    • 31744435871 scopus 로고    scopus 로고
    • Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies
    • Skol AD, Scott LJ, Abecasis GR, Boehnke M (2006) Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies. Nat Genet 38: 209-13.
    • (2006) Nat Genet , vol.38 , pp. 209-213
    • Skol, A.D.1    Scott, L.J.2    Abecasis, G.R.3    Boehnke, M.4
  • 34
    • 33645825830 scopus 로고    scopus 로고
    • A common genetic variant is associated with adult and childhood obesity
    • Herbert A, Gerry NP, McQueen MB, Heid IM, Pfeufer A, et al. (2006) A common genetic variant is associated with adult and childhood obesity. Science 312: 279-83.
    • (2006) Science , vol.312 , pp. 279-283
    • Herbert, A.1    Gerry, N.P.2    McQueen, M.B.3    Heid, I.M.4    Pfeufer, A.5
  • 37
    • 32044469601 scopus 로고    scopus 로고
    • PBAT: A comprehensive software package for genome-wide association analysis of complex family based studies
    • Van Steen K, Lange C (2005a) PBAT: a comprehensive software package for genome-wide association analysis of complex family based studies. Hum Genomics 2: 67-6.
    • (2005) Hum Genomics , vol.2 , pp. 67-76
    • Van Steen, K.1    Lange, C.2


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