The asymmetric meiosis in pentaploid dogroses (Rosa sect. Caninae) is associated with a skewed distribution of rRNA gene families in the gametes

Heredity

Volumn 101, Issue 4, 2008, Pages 359-367

  Kovarik, A ^a   Werlemark, G ^b   Leitch, A R ^c   Souckova Skalicka, K ^a   Lim, Y K ^c   Khaitova L ^a   Koukalova, B ^a   Nybom, H ^b  

^a INSTITUTE OF BIOPHYSICS   (Czech Republic)

^b SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^c QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

Concerted evolution; Meiosis; Polyploidy; rDNA; Rosa Caninae

Indexed keywords

PLANT DNA; RIBOSOMAL SPACER DNA; RIBOSOME RNA;

CHROMOSOME; CYTOGENETICS; DECIDUOUS TREE; GAMETE; GENOME; HYPOTHESIS TESTING; POLYPLOIDY; RNA;

ARTICLE; CLASSIFICATION; COMPARATIVE STUDY; GENETICS; GENOME; GERM CELL; MEIOSIS; MOLECULAR CLONING; MOLECULAR GENETICS; MULTIGENE FAMILY; MUTATION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; PLANT LEAF; POLLEN; POLYPLOIDY; ROSE; SWEDEN;

BASE SEQUENCE; CLONING, MOLECULAR; DNA, PLANT; DNA, RIBOSOMAL SPACER; GENOME, PLANT; GERM CELLS; MEIOSIS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; MUTATION; PHYLOGENY; PLANT LEAVES; POLLEN; POLYPLOIDY; RNA, RIBOSOMAL; ROSA; SWEDEN;

CANIDAE; ROSA; ROSA CANINA; ROSA DUMALIS; ROSA RUBIGINOSA;

EID: 52549100719     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2008.63     Document Type: Article

References (35)

1. Alvarez I, Wendel JF (2003). Ribosomal ITS sequences and plant phylogenetic inference. Mol Phylogenet Evol 29: 417-434.
2. Buckler ES, Ippolito A, Holtsford TP (1997). The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145: 821-832.
3. Cronn R, Cedroni M, Haselkorn T, Grover C, Wendel JF (2002). PCR-mediated recombination in amplification products derived from polyploid cotton. Theor Appl Genet 104: 482-489.
4. Dadejova M, Lim KY, Souckova-Skalicka K, Matyasek R, Grandbastien MA, Leitch A et al. (2007). Transcription activity of rRNA genes correlates with a tendency towards intergenomic homogenization in Nicotiana allotetraploids. New Phytol 174: 658-668.
5. Dover G (1982). Molecular drive: cohesive mode of species evolution. Nature 9: 111-116.
6. Eickbush TH, Eickbush DG (2007). Finely orchestrated movements: evolution of the ribosomal RNA genes. Genetics 175: 477-485.
7. Fojtova M, Kovarik A, Votruba I, Holy A (1998). Evaluation of the impact of S-adenosylhomocysteine metabolic pools on cytosine methylation of the tobacco genome. Eur J Biochem 252: 347-352.
8. Franzke A, Mummenhoff K (1999). Recent hybrid speciation in Cardamine (Brassicaceae)-conversion of nuclear ribosomal ITS sequences in statu nascendi. Theor Appl Genet 98: 831-834.
9. Galtier N, Gouy M, Gautier C (1996). SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny. Comput Applic Biosci 12: 543-548.
10. Ganley AR, Kobayashi T (2007). Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data. Genome Res 17: 184-191.
11. Harpke D, Peterson A (2006). Non-concerted ITS evolution in Mammillaria (Cactaceae). Mol Phylogenet Evol 41: 579-593.
12. Kejnovsky E, Hobza R, Kubat Z, Widmer A, Marais GA, Vyskot B (2007). High intrachromosomal similarity of retrotransposon long terminal repeats: evidence for homogenization by gene conversion on plant sex chromosomes? Gene 390: 92-97.
13. Keller I, Chintauan-Marquier IC, Veltsos P, Nichols RA (2006). Ribosomal DNA in the grasshopper Podisma pedestris: escape from concerted evolution. Genetics 174: 863-874.
14. Kimura M (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
15. Koopman WJM, Wissemann V, De Cock K, Van Huylenbroeck J, De Riek J, Sabatino GJH et al. (2008). AFLP markers as a tool to reconstruct complex relationships: a case study in Rosa (Rosaceae). Am J Bot 95: 353-366.
16. Kovarik A, Matyasek R, Leitch A, Gazdova B, Fulnecek J, Bezdek M (1997). Variability in CpNpG methylation in higher plant genomes. Gene 204: 25-33.
17. Kovarik A, Pires JC, Leitch AR, Lim KY, Sherwood AM, Matyasek R et al. (2005). Rapid concerted evolution of nuclear ribosomal DNA in two Tragopogon allopolyploids of recent and recurrent origin. Genetics 169: 931-944.
18. Leach CR, Houben A, Field B, Pistrick K, Demidov D, Timmis JN (2005). Molecular evidence for transcription of genes on a B chromosome in Crepis capillaris. Genetics 171: 269-278.
19. Lim KY, Kovarik A, Matyasek R, Bezdek M, Lichtenstein CP, Leitch AR (2000). Gene conversion of ribosomal DNA in Nicotiana tabacum is associated with undermethylated, decondensed and probably active gene units. Chromosoma 109: 161-172.
20. Lim KY, Werlemark G, Matyasek R, Bringloe JB, Sieber V, El Mokadem H et al. (2005). Evolutionary implications of permanent odd polyploidy in the stable sexual, pentaploid of Rosa canina L. Heredity 94: 501-506.
21. Matyasek R, Tate JA, Lim YK, Srubarova H, Koh J, Leitch AR et al. (2007). Concerted evolution of rDNA in recently formed Tragopogon allotetraploids is typically associated with an inverse correlation between gene copy number and expression. Genetics 176: 2509-2519.
22. Nieto Feliner G, Rossello JA (2007). Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants. Mol Phylogenet Evol 44: 911-919.
23. Nybom H, Esselink GD, Werlemark G, Leus L, Vosman B (2006). Unique genomic configuration revealed by microsatellite DNA in polyploid dogroses, Rosa sect. Caninae. J Evol Biol 19: 635-648.
24. Nybom H, Esselink GD, Werlemark G, Vosman B (2004). Microsatellite DNA marker inheritance indicates preferential pairing between two highly homologous genomes in polyploid and hemisexual dogroses, Rosa L. Sect. Caninae DC. Heredity 92: 139-150.
25. Ritz CM, Schmuths H, Wissemann V (2005). Evolution by reticulation: European dogroses originated by multiple hybridization across the genus Rosa. J Heredity 96: 4-14.
26. Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984). Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 81: 8014-8018.
27. Täckholm G (1920). On the cytology of the genus Rosa. Svensk Bot Tidskrift 14: 300-311.
28. Volkov RA, Komarova NY, Hemleben V (2007). Ribosomal DNA in plant hybrids: inheritance, rearrangement, expression. Syst Biodivers 5: 261-276.
29. Weiss-Schneeweiss H, Schneeweiss GM, Stuessy TF, Mabuchi T, Park J-M, Jang C-G et al. (2007). Chromosomal stasis in diploids contrasts with restructuring in auto- and allopolyploid taxa of Hepatica (Ranunculaceae). New Phytol 174: 669-682.
30. Werlemark G, Nybom H (2001). Skewed distribution of morphological character scores and molecular markers in three interspecific crosses in Rosa sect. Caninae. Hereditas 134: 1-13.
31. Wissemann V (2002). Molecular evidence for allopolyploid origin of the Rosa canina-complex (Rosaceae, Rosoideae). J Appl Bot 76: 176-178.
32. Wissemann V (2003). Conventional taxonomy (wild roses). In Roberts AV, Debener T, Gudin S (eds). Encyclopedia of Rose Science. Elsevier Academic Press: Oxford, pp 111-117.
33. Wissemann V (2006). Beauty and the bastards. B I F Futura 21: 158-163.
34. Zhang LB, Comes HP, Kadereit JW (2001). Phylogeny and quaternary history of the European montane/alpine endemic Soldanella (Primulaceae) based on ITS and AFLP variation. Am J Bot 88: 2331-2345.
35. Zhang W, Qu J, Gu H, Gao W, Liu M, Chen J et al. (2002). Studies on the origin and evolution of tetraploid wheats based on the internal transcribed spacer (ITS) sequences of nuclear ribosomal DNA. Theor Appl Genet 104: 1099-1106.