-
1
-
-
0027237601
-
Coding end sequence can markedly affect the initiation of V(D)J recombination
-
Gerstein RM, Lieber MR. Coding end sequence can markedly affect the initiation of V(D)J recombination. Genes Dev. 1993;7:1459-1469.
-
(1993)
Genes Dev
, vol.7
, pp. 1459-1469
-
-
Gerstein, R.M.1
Lieber, M.R.2
-
2
-
-
0027495670
-
V(D)J recombination coding junction formation without DNA homology: Processing of coding end termini
-
Boubnov NV, Wills ZP, Weaver DT. V(D)J recombination coding junction formation without DNA homology: Processing of coding end termini. Mol Cell Biol. 1993;13:6957-6968.
-
(1993)
Mol Cell Biol
, vol.13
, pp. 6957-6968
-
-
Boubnov, N.V.1
Wills, Z.P.2
Weaver, D.T.3
-
3
-
-
0028956147
-
Asymmetric processing of coding ends and the effect of coding end nucleotide composition on V(D)J recombination
-
Ezekiel UR, Engler P, Stern D, Storb U. Asymmetric processing of coding ends and the effect of coding end nucleotide composition on V(D)J recombination. Immunity. 1995;2:381-389.
-
(1995)
Immunity
, vol.2
, pp. 381-389
-
-
Ezekiel, U.R.1
Engler, P.2
Stern, D.3
Storb, U.4
-
4
-
-
26644444577
-
The DNA-PKcs phosphorylation sites of human artemis
-
Ma Y, Pannicke U, Lu H, Niewolik D, Schwarz K, Lieber MR. The DNA-PKcs phosphorylation sites of human artemis. J Biol Chem. 2005;280:33839-33846.
-
(2005)
J Biol Chem
, vol.280
, pp. 33839-33846
-
-
Ma, Y.1
Pannicke, U.2
Lu, H.3
Niewolik, D.4
Schwarz, K.5
Lieber, M.R.6
-
5
-
-
33750685856
-
DNA-PKcs dependence of artemis endonucleolytic activity: Differences between hairpins and 5′ or 3′ overhangs
-
Niewolik D, Pannicke U, Lu H, et al. DNA-PKcs dependence of artemis endonucleolytic activity: Differences between hairpins and 5′ or 3′ overhangs. J Biol Chem. 2006;281:33900-33909.
-
(2006)
J Biol Chem
, vol.281
, pp. 33900-33909
-
-
Niewolik, D.1
Pannicke, U.2
Lu, H.3
-
7
-
-
0034714199
-
Interactions of the DNA ligase IV-XRCC4 complex with DNA ends and the DNA-dependent protein kinase
-
Chen L, Trujillo K, Sung P, Tomkinson AE. Interactions of the DNA ligase IV-XRCC4 complex with DNA ends and the DNA-dependent protein kinase. J Biol Chem. 2000;275:26196-26205.
-
(2000)
J Biol Chem
, vol.275
, pp. 26196-26205
-
-
Chen, L.1
Trujillo, K.2
Sung, P.3
Tomkinson, A.E.4
-
9
-
-
31044432090
-
XLF interacts with the XRCC4-DNA ligase IV complex to promote nonhomologous end-joining
-
Ahnesorg P, Smith P, Jackson SP. XLF interacts with the XRCC4-DNA ligase IV complex to promote nonhomologous end-joining. Cell. 2006;124:301-313.
-
(2006)
Cell
, vol.124
, pp. 301-313
-
-
Ahnesorg, P.1
Smith, P.2
Jackson, S.P.3
-
10
-
-
31044440630
-
Cernunnos, a novel nonhomologous end-joining factor, is mutated in human immunodeficiency with microcephaly
-
Buck D, Malivert L, deChasseval R, et al. Cernunnos, a novel nonhomologous end-joining factor, is mutated in human immunodeficiency with microcephaly. Cell. 2006;124:287-299.
-
(2006)
Cell
, vol.124
, pp. 287-299
-
-
Buck, D.1
Malivert, L.2
deChasseval, R.3
-
11
-
-
0033168094
-
The role of Schizosaccharomyces pombe Rad32, the Mre11 homologue, and other DNA damage response proteins in non-homologous end joining and telomere length maintenance
-
Wilson S, Warr N, Taylor DL, Watts FZ. The role of Schizosaccharomyces pombe Rad32, the Mre11 homologue, and other DNA damage response proteins in non-homologous end joining and telomere length maintenance. Nucl Acids Res. 1999;27:2655-2661.
-
(1999)
Nucl Acids Res
, vol.27
, pp. 2655-2661
-
-
Wilson, S.1
Warr, N.2
Taylor, D.L.3
Watts, F.Z.4
-
12
-
-
0036293744
-
Association of DNA polymerase mu with Ku and DNA ligase IV: Role of in end-joining double-strand break repair
-
Mahajan KN, NickMcElhinny SA, Mitchell BS, Ramsden DA. Association of DNA polymerase mu with Ku and DNA ligase IV: Role of in end-joining double-strand break repair. Mol Cell Biol. 2002;22:5194-5202.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 5194-5202
-
-
Mahajan, K.N.1
NickMcElhinny, S.A.2
Mitchell, B.S.3
Ramsden, D.A.4
-
13
-
-
9744241712
-
A biochemically defi ned system for mammalian nonhomologous DNA end joining
-
Ma Y, Lu H, Tippin B, et al. A biochemically defi ned system for mammalian nonhomologous DNA end joining. Mol Cell. 2004;16:701-713.
-
(2004)
Mol Cell
, vol.16
, pp. 701-713
-
-
Ma, Y.1
Lu, H.2
Tippin, B.3
-
14
-
-
25444475799
-
Repair of double-strand DNA breaks by the human nonhomologous DNA end joining pathway: The iterative processing model
-
Ma Y, Lu H, Schwarz K, Lieber MR. Repair of double-strand DNA breaks by the human nonhomologous DNA end joining pathway: The iterative processing model. Cell Cycle. 2005;4:1193-2000.
-
(2005)
Cell Cycle
, vol.4
, pp. 1193-2000
-
-
Ma, Y.1
Lu, H.2
Schwarz, K.3
Lieber, M.R.4
-
15
-
-
33747892852
-
Recombinase, chromosomal translocations and lymphoid neoplasia: Targeting mistakes and repair failures
-
Marculescu R, Vanura K, Montpellier B, et al. Recombinase, chromosomal translocations and lymphoid neoplasia: Targeting mistakes and repair failures. DNA Repair. 2006;5:1246-1258.
-
(2006)
DNA Repair
, vol.5
, pp. 1246-1258
-
-
Marculescu, R.1
Vanura, K.2
Montpellier, B.3
-
16
-
-
33748138991
-
Roles of nonhomologous DNA end joining, V(D)J recombination, and class switch recombination in chromosomal translocations
-
Lieber MR, Yu K, Raghavan SC. Roles of nonhomologous DNA end joining, V(D)J recombination, and class switch recombination in chromosomal translocations. DNA Repair. 2006;5:1234-1245.
-
(2006)
DNA Repair
, vol.5
, pp. 1234-1245
-
-
Lieber, M.R.1
Yu, K.2
Raghavan, S.C.3
-
17
-
-
0026588937
-
BCL2 oncogene translocation is mediated by a c-like consensus
-
Wyatt RT, Rudders RA, Zelenetz A, Delellis RA, Krontiris TG. BCL2 oncogene translocation is mediated by a c-like consensus. J Exp Med. 1992;175:1575-1588.
-
(1992)
J Exp Med
, vol.175
, pp. 1575-1588
-
-
Wyatt, R.T.1
Rudders, R.A.2
Zelenetz, A.3
Delellis, R.A.4
Krontiris, T.G.5
-
18
-
-
0343953047
-
Follicular lymphomas BCL-2/IgH junctions contain templated nucleotide insertions: Novel insights into the mechanism of t(14;18) translocation
-
Jager U, Bocskor S, Le T, et al. Follicular lymphomas BCL-2/IgH junctions contain templated nucleotide insertions: Novel insights into the mechanism of t(14;18) translocation. Blood. 2000;95:3520-3529.
-
(2000)
Blood
, vol.95
, pp. 3520-3529
-
-
Jager, U.1
Bocskor, S.2
Le, T.3
-
19
-
-
1542287213
-
A non-BDNA structure at the bcl-2 major break point region is cleaved by the RAG complex
-
Raghavan SC, Swanson PC, Wu X, Hsieh C-L, Lieber MR. A non-BDNA structure at the bcl-2 major break point region is cleaved by the RAG complex. Nature. 2004a;428:88-93.
-
(2004)
Nature
, vol.428
, pp. 88-93
-
-
Raghavan, S.C.1
Swanson, P.C.2
Wu, X.3
Hsieh, C.-L.4
Lieber, M.R.5
-
20
-
-
0037033440
-
V(D)J-mediated translocations in lymphoid neoplasms: A functional assessment of genomic instability by cryptic sites
-
Marculescu R, Le T, Simon P, Jaeger U, Nadel B. V(D)J-mediated translocations in lymphoid neoplasms: A functional assessment of genomic instability by cryptic sites. J Exp Med. 2002;195:85-98.
-
(2002)
J Exp Med
, vol.195
, pp. 85-98
-
-
Marculescu, R.1
Le, T.2
Simon, P.3
Jaeger, U.4
Nadel, B.5
-
21
-
-
0035800747
-
Analysis of the V(D)J recombination efficiency at lymphoid chromosomal translocation breakpoints
-
Raghavan SC, Kirsch IR, Lieber MR. Analysis of the V(D)J recombination efficiency at lymphoid chromosomal translocation breakpoints. J Biol Chem. 2001;276:29126-29133.
-
(2001)
J Biol Chem
, vol.276
, pp. 29126-29133
-
-
Raghavan, S.C.1
Kirsch, I.R.2
Lieber, M.R.3
-
22
-
-
20744431751
-
Evidence for a triplex DNA conformation at the bcl-2 major breakpoint region of the t(14;18) translocation
-
Raghavan SC, Chastain P, Lee JS, et al. Evidence for a triplex DNA conformation at the bcl-2 major breakpoint region of the t(14;18) translocation. J Biol Chem. 2005c;280:22749-22760.
-
(2005)
J Biol Chem
, vol.280
, pp. 22749-22760
-
-
Raghavan, S.C.1
Chastain, P.2
Lee, J.S.3
-
23
-
-
21744455557
-
Double-strand break formation by the RAG complex at the bcl-2 Mbr and at other non-B DNA structures in vitro
-
Raghavan SC, Swanson PC, Ma Y, Lieber MR. Double-strand break formation by the RAG complex at the bcl-2 Mbr and at other non-B DNA structures in vitro. Mol Cell Biol. 2005a;25:5904-5919.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 5904-5919
-
-
Raghavan, S.C.1
Swanson, P.C.2
Ma, Y.3
Lieber, M.R.4
-
24
-
-
0033387958
-
The RAG1/RAG2 complex constitutes a 3′ flap endonuclease: Implications for junctional diversity in V(D)J and transpositional recombination
-
Santagata S, Besmer E, Villa A, et al. The RAG1/RAG2 complex constitutes a 3′ flap endonuclease: Implications for junctional diversity in V(D)J and transpositional recombination. Mol Cell. 1999;4:935-947.
-
(1999)
Mol Cell
, vol.4
, pp. 935-947
-
-
Santagata, S.1
Besmer, E.2
Villa, A.3
-
25
-
-
0030795764
-
A complex of RAG-1 and RAG-2 persists on the DNA after single-strand cleavage at V(D)J recombination signal sequences
-
Grawunder U, Lieber MR. A complex of RAG-1 and RAG-2 persists on the DNA after single-strand cleavage at V(D)J recombination signal sequences. Nucl Acids Res. 1997;25:1375-1382.
-
(1997)
Nucl Acids Res
, vol.25
, pp. 1375-1382
-
-
Grawunder, U.1
Lieber, M.R.2
-
26
-
-
8544228390
-
Chromosomal translocations and non-B DNA structures in the human genome
-
Raghavan SC, Lieber MR. Chromosomal translocations and non-B DNA structures in the human genome. Cell Cycle. 2004;3:762-768.
-
(2004)
Cell Cycle
, vol.3
, pp. 762-768
-
-
Raghavan, S.C.1
Lieber, M.R.2
-
27
-
-
3242892354
-
The bounty of RAGs: Recombination signal complexes and reaction outcomes
-
Swanson PC. The bounty of RAGs: Recombination signal complexes and reaction outcomes. Immunolog Rev. 2004;200:90-114.
-
(2004)
Immunolog Rev
, vol.200
, pp. 90-114
-
-
Swanson, P.C.1
-
28
-
-
22544460769
-
Both V(D)J coding ends but neither signal end can recombine at the bcl-2 major breakpoint region and the rejoining is ligase IV dependent
-
Raghavan SC, Hsieh C-L, Lieber MR. Both V(D)J coding ends but neither signal end can recombine at the bcl-2 major breakpoint region and the rejoining is ligase IV dependent. Mol Cell Biol. 2005b;25: 6475-6484.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 6475-6484
-
-
Raghavan, S.C.1
Hsieh, C.-L.2
Lieber, M.R.3
-
29
-
-
33747893961
-
Myc translocations in B cell and plasma cell neoplasms
-
Janz S. Myc translocations in B cell and plasma cell neoplasms. DNA Repair. 2006;5:1213-1224.
-
(2006)
DNA Repair
, vol.5
, pp. 1213-1224
-
-
Janz, S.1
-
30
-
-
4644257592
-
AID is required for c-myc/ IgH chromosomal translocations in vivo
-
Ramiro AR, Jankovic M, Eisenreich T, et al. AID is required for c-myc/ IgH chromosomal translocations in vivo. Cell. 2004;118:431-438.
-
(2004)
Cell
, vol.118
, pp. 431-438
-
-
Ramiro, A.R.1
Jankovic, M.2
Eisenreich, T.3
-
31
-
-
0033603340
-
Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells
-
Muramatsu M, Sankaranand V, Anant S, et al. Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells. J Biol Chem. 1999;274: 18470-18476.
-
(1999)
J Biol Chem
, vol.274
, pp. 18470-18476
-
-
Muramatsu, M.1
Sankaranand, V.2
Anant, S.3
-
32
-
-
0037991681
-
Class switch recombination and somatic hypermutation require activation-induced cytidine deaminase (AID), a member of the RNA editing cytidine deaminase family
-
Muramatsu M, Kinoshita K, Fagarasan S, Yamada S, Shinkai Y, Honjo T. Class switch recombination and somatic hypermutation require activation-induced cytidine deaminase (AID), a member of the RNA editing cytidine deaminase family. Cell. 2000;102:541-544.
-
(2000)
Cell
, vol.102
, pp. 541-544
-
-
Muramatsu, M.1
Kinoshita, K.2
Fagarasan, S.3
Yamada, S.4
Shinkai, Y.5
Honjo, T.6
-
33
-
-
0037650190
-
R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells
-
Yu K, Chedin F, Hsieh C-L, Wilson TE, Lieber MR. R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells. Nature Immunol. 2003;4:442-451.
-
(2003)
Nature Immunol
, vol.4
, pp. 442-451
-
-
Yu, K.1
Chedin, F.2
Hsieh, C.-L.3
Wilson, T.E.4
Lieber, M.R.5
-
34
-
-
0037926476
-
Processive AID-catalyzed cytosine deamination on single-stranded DNA stimulates somatic hypermutation
-
Pham P, Bransteitter R, Petruska J, Goodman MF. Processive AID-catalyzed cytosine deamination on single-stranded DNA stimulates somatic hypermutation. Nature. 2003;424:103-107.
-
(2003)
Nature
, vol.424
, pp. 103-107
-
-
Pham, P.1
Bransteitter, R.2
Petruska, J.3
Goodman, M.F.4
-
35
-
-
0037388165
-
Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase
-
Bransteitter R, Pham P, Scharff MD, Goodman MF. Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase. Proc Natl Acad Sci. 2003;100:4102-4107.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 4102-4107
-
-
Bransteitter, R.1
Pham, P.2
Scharff, M.D.3
Goodman, M.F.4
-
36
-
-
1342282983
-
DNA substrate length and surrounding sequence affect the activation induced deaminase activity at cytidine
-
Yu K, Huang FT, Lieber MR. DNA substrate length and surrounding sequence affect the activation induced deaminase activity at cytidine. J Biol Chem. 2004;279:6496-6500.
-
(2004)
J Biol Chem
, vol.279
, pp. 6496-6500
-
-
Yu, K.1
Huang, F.T.2
Lieber, M.R.3
-
37
-
-
0242268033
-
Nucleic acid structures and enzymes in the immunoglobulin class switch recombination mechanism
-
Yu K, Lieber MR. Nucleic acid structures and enzymes in the immunoglobulin class switch recombination mechanism. DNA Repair. 2003;2: 1163-1174.
-
(2003)
DNA Repair
, vol.2
, pp. 1163-1174
-
-
Yu, K.1
Lieber, M.R.2
-
38
-
-
33645527783
-
The downstream boundary of chromosomal R-loops at murine switch regions: Implications for the mechanism of class switch recombination
-
Huang F-T, Yu K, Hsieh C-L, Lieber MR. The downstream boundary of chromosomal R-loops at murine switch regions: implications for the mechanism of class switch recombination. Proc Natl Acad Sci. 2006;103:5030-5035.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 5030-5035
-
-
Huang, F.-T.1
Yu, K.2
Hsieh, C.-L.3
Lieber, M.R.4
-
39
-
-
14044254831
-
Fine-structure analysis of activation-induced deaminase accessibility to class switch region R-loops
-
Yu K, Roy D, Bayramyan M, Haworth IS, Lieber MR. Fine-structure analysis of activation-induced deaminase accessibility to class switch region R-loops. Mol Cell Biol. 2005;25:1730-1736.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 1730-1736
-
-
Yu, K.1
Roy, D.2
Bayramyan, M.3
Haworth, I.S.4
Lieber, M.R.5
-
40
-
-
0029598833
-
RNA: DNA complex formation upon transcription of immunoglobulin switch regions: Implications for the mechanism and regulation of class switch recombination
-
Daniels GA, Lieber MR. RNA: DNA complex formation upon transcription of immunoglobulin switch regions: Implications for the mechanism and regulation of class switch recombination. Nucl Acids Res. 1995;23:5006-5011
-
(1995)
Nucl Acids Res
, vol.23
, pp. 5006-5011
-
-
Daniels, G.A.1
Lieber, M.R.2
|