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Volumn 13, Issue 16, 2008, Pages 6072-6078

Prediction of protein allergenicity using local description of amino acid sequence

Author keywords

Allergens; Allergy Assessment; Bioinformatics; Prediction; Review; Support Vector Machine

Indexed keywords

ALLERGEN; EPITOPE; PROTEIN;

EID: 52049102422     PISSN: 27686701     EISSN: 27686698     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (33)

References (44)
  • 1
    • 0030330040 scopus 로고    scopus 로고
    • Introduction to allergic diseases
    • Mekori Y. A.: Introduction to allergic diseases. Crit Rev Food Sci Nutr 36, S1-18 (1996)
    • (1996) Crit Rev Food Sci Nutr , vol.36
    • Mekori, Y.A.1
  • 2
    • 1542316862 scopus 로고    scopus 로고
    • Statistical Evaluation of Local Alignment Features Predicting Allergenicity Using Supervised Classification Algorithms
    • DOI 10.1159/000076382
    • Soeria-Atmadja D., A. Zorzet, M. G. Gustafsson, U. Hammerling: Statistical evaluation of local alignment features predicting allergenicity using supervised classification algorithms. Int Arch Allergy Immunol 133, 101-112 (2004) (Pubitemid 38314641)
    • (2004) International Archives of Allergy and Immunology , vol.133 , Issue.2 , pp. 101-112
    • Soeria-Atmadja, D.1    Zorzet, A.2    Gustafsson, M.G.3    Hammerling, U.4
  • 4
    • 0027715015 scopus 로고
    • The human IgE network
    • DOI 10.1038/366421a0
    • Sutton B. J., H. J. Gould: The human IgE network. Nature 366, 421-428 (1993) (Pubitemid 24013874)
    • (1993) Nature , vol.366 , Issue.6454 , pp. 421-428
    • Sutton, B.J.1    Gould, H.J.2
  • 7
    • 13244265577 scopus 로고    scopus 로고
    • Allermatch, a webtool for the prediction of potential allergenicity according to current FAO/WHO codex alimentarius guidelines
    • Fiers M. W., G. A. Kleter, H. Nijland, A. A. Peijnenburg, J. P. Nap, R. C. van Ham: Allermatch, a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines. BMC Bioinformatics 5, 133 (2004)
    • (2004) BMC Bioinformatics , vol.5 , pp. 133
    • Fiers, M.W.1    Kleter, G.A.2    Nijland, H.3    Peijnenburg, A.A.4    Nap, J.P.5    Van Ham, R.C.6
  • 8
    • 0031618972 scopus 로고    scopus 로고
    • The use of amino acid sequence alignments to assess potential allergenicity of proteins used in genetically modified foods
    • Gendel S. M.: The use of amino acid sequence alignments to assess potential allergenicity of proteins used in genetically modified foods. Adv Food Nutr Res 42, 45-62 (1998)
    • (1998) Adv Food Nutr Res , vol.42 , pp. 45-62
    • Gendel, S.M.1
  • 9
    • 0036260304 scopus 로고    scopus 로고
    • Sequence analysis for assessing potential allergenicity
    • Gendel S. M.: Sequence analysis for assessing potential allergenicity. Ann N Y Acad Sci 964, 87-98 (2002) (Pubitemid 34596833)
    • (2002) Annals of the New York Academy of Sciences , vol.964 , pp. 87-98
    • Gendel, S.M.1
  • 10
    • 0038380463 scopus 로고    scopus 로고
    • Allergenicity prediction by protein sequence
    • Stadler M. B., B. M. Stadler: Allergenicity prediction by protein sequence. FASEB J 17, 1141-1143 (2003)
    • (2003) FASEB J , vol.17 , pp. 1141-1143
    • Stadler, M.B.1    Stadler, B.M.2
  • 12
    • 33144474710 scopus 로고    scopus 로고
    • The value of short amino acid sequence matches for prediction of protein allergenicity
    • DOI 10.1093/toxsci/kfj068
    • Silvanovich A., M. A. Nemeth, P. Song, R. Herman, L. Tagliani, G. A. Bannon: The value of short amino acid sequence matches for prediction of protein allergenicity. Toxicol Sci 90, 252-258 (2006) (Pubitemid 43264745)
    • (2006) Toxicological Sciences , vol.90 , Issue.1 , pp. 252-258
    • Silvanovich, A.1    Nemeth, M.A.2    Song, P.3    Herman, R.4    Tagliani, L.5    Bannon, G.A.6
  • 13
    • 0036941115 scopus 로고    scopus 로고
    • Prediction of food protein allergenicity: A bio-informatic learning systems approach
    • Zorzet A., M. Gustafsson, U. Hammerling: Prediction of food protein allergenicity: a bioinformatic learning systems approach. In Silico Biol 2, 525-534 (2002) (Pubitemid 36329194)
    • (2002) Silico Biology , vol.2 , Issue.4 , pp. 525-534
    • Zorzet, A.1    Gustafsson, M.2    Hammerling, U.3
  • 14
    • 8844259689 scopus 로고    scopus 로고
    • Predicting allergenic proteins using wavelet transform
    • DOI 10.1093/bioinformatics/bth286
    • Li K. B., P. Issac, A. Krishnan: Predicting allergenic proteins using wavelet transform. Bioinformatics 20, 2572-2578 (2004) (Pubitemid 39530143)
    • (2004) Bioinformatics , vol.20 , Issue.16 , pp. 2572-2578
    • Li, K.-B.1    Issac, P.2    Krishnan, A.3
  • 15
    • 12744279638 scopus 로고    scopus 로고
    • Supervised identification of allergen-representative peptides for in silico detection of potentially allergenic proteins
    • Bjorklund A. K., D. Soeria-Atmadja, A. Zorzet, U. Hammerling, M. G. Gustafsson: Supervised identification of allergen-representative peptides for in silico detection of potentially allergenic proteins. Bioinformatics 21, 39-50 (2005)
    • (2005) Bioinformatics , vol.21 , pp. 39-50
    • Bjorklund, A.K.1    Soeria-Atmadja, D.2    Zorzet, A.3    Hammerling, U.4    Gustafsson, M.G.5
  • 16
    • 33747871140 scopus 로고    scopus 로고
    • AlgPred: Prediction of allergenic proteins and mapping of IgE epitopes
    • DOI 10.1093/nar/gkl343
    • Saha S., G. P. Raghava: AlgPred: prediction of allergenic proteins and mapping of IgE epitopes. Nucleic Acids Res 34, W202-W209 (2006) (Pubitemid 44529765)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS.
    • Saha, S.1    Raghava, G.P.S.2
  • 17
    • 0037081391 scopus 로고    scopus 로고
    • Construction of recombinant targeting immunogens incorporating an HIV-1 neutralizing epitope into sites of differing conformational constraint
    • DOI 10.1016/S0264-410X(01)00441-8, PII S0264410X01004418
    • Ho J., K. S. MacDonald, B. H. Barber: Construction of recombinant targeting immunogens incorporating an HIV-1 neutralizing epitope into sites of differing conformational constraint. Vaccine 20, 1169-1180 (2002) (Pubitemid 34135954)
    • (2002) Vaccine , vol.20 , Issue.7-8 , pp. 1169-1180
    • Ho, J.1    MacDonald, K.S.2    Barber, B.H.3
  • 21
    • 0036037451 scopus 로고    scopus 로고
    • Non-allergenic antigen in allergic sensitization: Responses to the mite ferritin heavy chain antigen by allergic and non-allergic subjects
    • DOI 10.1046/j.1365-2222.2002.01473.x
    • Epton M. J., W. Smith, B. J. Hales, L. Hazell, P. J. Thompson, W. R. Thomas: Non-allergenic antigen in allergic sensitization: responses to the mite ferritin heavy chain antigen by allergic and non-allergic subjects. Clin Exp Allergy 32, 1341-1347 (2002) (Pubitemid 35024961)
    • (2002) Clinical and Experimental Allergy , vol.32 , Issue.9 , pp. 1341-1347
    • Epton, M.J.1    Smith, W.2    Hales, B.J.3    Hazell, L.4    Thompson, P.J.5    Thomas, W.R.6
  • 22
    • 0346880190 scopus 로고    scopus 로고
    • Molecular and immunological characterization of the C-terminal region of a new Echinococcus granulosus Heat Shock Protein 70
    • DOI 10.1046/j.1365-3024.2003.00617.x
    • Ortona E., P. Margutti, F. Delunardo, S. Vaccari, R. Rigano, E. Profumo, B. Buttari, A. Teggi, A. Siracusano: Molecular and immunological characterization of the Cterminal region of a new Echinococcus granulosus Heat Shock Protein 70. Parasite Immunol 25, 119-126 (2003) (Pubitemid 38021349)
    • (2003) Parasite Immunology , vol.25 , Issue.3 , pp. 119-126
    • Ortona, E.1    Margutti, P.2    Delunardo, F.3    Vaccari, S.4    Rigano, R.5    Profumo, E.6    Buttari, B.7    Teggi, A.8    Siracusano, A.9
  • 23
  • 24
    • 0029853998 scopus 로고    scopus 로고
    • Absence of cross-reactivity of IgE antibodies from subjects allergic to Hevea brasiliensis latex with a new source of natural rubber latex from guayule (Parthenium argentatum)
    • Siler D. J., K. Cornish, R. G. Hamilton: Absence of cross-reactivity of IgE antibodies from subjects allergic to Hevea brasiliensis latex with a new source of natural rubber latex from guayule (Parthenium argentatum). J Allergy Clin Immunol 98, 895-902 (1996) (Pubitemid 26405889)
    • (1996) Journal of Allergy and Clinical Immunology , vol.98 , Issue.5 , pp. 895-902
    • Siler, D.J.1    Cornish, K.2    Hamilton, R.G.3
  • 25
    • 0035977837 scopus 로고    scopus 로고
    • Determination of protein allergenicity: Studies in mice
    • DOI 10.1016/S0378-4274(01)00276-4, PII S0378427401002764
    • Dearman R. J., I. Kimber: Determination of protein allergenicity: studies in mice. Toxicol Lett 120, 181-186 (2001) (Pubitemid 32375085)
    • (2001) Toxicology Letters , vol.120 , Issue.1-3 , pp. 181-186
    • Dearman, R.J.1    Kimber, I.2
  • 26
    • 0242721787 scopus 로고    scopus 로고
    • Evaluation of protein allergenic potential in mice: Dose-response analyses
    • DOI 10.1046/j.1365-2222.2003.01793.x
    • Dearman R. J., S. Stone, H. T. Caddick, D. A. Basketter, I. Kimber: Evaluation of protein allergenic potential in mice: dose-response analyses. Clin Exp Allergy 33, 1586-1594 (2003) (Pubitemid 37421639)
    • (2003) Clinical and Experimental Allergy , vol.33 , Issue.11 , pp. 1586-1594
    • Dearman, R.J.1    Stone, S.2    Caddick, H.T.3    Basketter, D.A.4    Kimber, I.5
  • 27
    • 0036838688 scopus 로고    scopus 로고
    • C-terminal cysteine residues determine the IgE binding of Aspergillus fumigatus allergen Asp f 2
    • Banerjee B., V. P. Kurup, P. A. Greenberger, K. J. Kelly, J. N. Fink: C-terminal cysteine residues determine the IgE binding of Aspergillus fumigatus allergen Asp f 2. J Immunol 169, 5137-5144 (2002) (Pubitemid 35217183)
    • (2002) Journal of Immunology , vol.169 , Issue.9 , pp. 5137-5144
    • Banerjee, B.1    Kurup, V.P.2    Greenberger, P.A.3    Kelly, K.J.4    Fink, J.N.5
  • 28
    • 0030788260 scopus 로고    scopus 로고
    • Determination of the N- and C-terminal sequences required to bind human ige of the major house dust mite allergen Der f 2 and epitope mapping for monoclonal antibodies
    • DOI 10.1016/S0161-5890(97)00020-5, PII S0161589097000205
    • Takai T., T. Yuuki, Y. Okumura, A. Mori, H. Okudaira: Determination of the N-and C-terminal sequences required to bind human IgE of the major house dust mite allergen Der f 2 and epitope mapping for monoclonal antibodies. Mol Immunol 34, 255-261 (1997) (Pubitemid 27293740)
    • (1997) Molecular Immunology , vol.34 , Issue.3 , pp. 255-261
    • Takai, T.1    Yuuki, T.2    Okumura, Y.3    Mori, A.4    Okudaira, H.5
  • 29
    • 0037470521 scopus 로고    scopus 로고
    • Reduction of antigenicity and allergenicity of genetically modified egg white allergen, ovomucoid third domain
    • DOI 10.1016/S0006-291X(03)00117-7
    • Mine Y., E. Sasaki, J. W. Zhang: Reduction of antigenicity and allergenicity of genetically modified egg white allergen, ovomucoid third domain. Biochem Biophys Res Commun 302, 133-137 (2003) (Pubitemid 36268930)
    • (2003) Biochemical and Biophysical Research Communications , vol.302 , Issue.1 , pp. 133-137
    • Mine, Y.1    Sasaki, E.2    Zhang, J.W.3
  • 32
    • 33847328275 scopus 로고    scopus 로고
    • AllerTool: A web server for predicting allergenicity and allergic cross-reactivity in proteins
    • DOI 10.1093/bioinformatics/btl621
    • Zhang Z. H., J. L. Koh, G. L. Zhang, K. H. Choo, M. T. Tammi, J. C. Tong: AllerTool: a web server for predicting allergenicity and allergic cross-reactivity in proteins. Bioinformatics 23, 504-506 (2007) (Pubitemid 46323136)
    • (2007) Bioinformatics , vol.23 , Issue.4 , pp. 504-506
    • Zhang, Z.H.1    Koh, J.L.Y.2    Zhang, G.L.3    Choo, K.H.4    Tammi, M.T.5    Tong, J.C.6
  • 33
    • 33748199236 scopus 로고    scopus 로고
    • Computer prediction of allergen proteins from sequence-derived protein structural and physicochemical properties
    • DOI 10.1016/j.molimm.2006.02.010, PII S0161589006000368
    • Cui J., L. Y. Han, H. Li, C. Y. Ung, Z. Q. Tang, C. J. Zheng, Z. W. Cao, Y. Z. Chen: Computer prediction of allergen proteins from sequence-derived protein structural and physicochemical properties. Mol Immunol 44, 514-520 (2007) (Pubitemid 44308349)
    • (2007) Molecular Immunology , vol.44 , Issue.4 , pp. 514-520
    • Cui, J.1    Han, L.Y.2    Li, H.3    Ung, C.Y.4    Tang, Z.Q.5    Zheng, C.J.6    Cao, Z.W.7    Chen, Y.Z.8
  • 34
    • 0029047319 scopus 로고
    • Prediction of protein folding class using global description of amino acid sequence
    • Dubchak I., I. Muchnik, S. R. Holbrook, S. H. Kim: Prediction of protein folding class using global description of amino acid sequence. Proc Natl Acad Sci USA 92, 8700-8704 (1995)
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 8700-8704
    • Dubchak, I.1    Muchnik, I.2    Holbrook, S.R.3    Kim, S.H.4
  • 35
  • 36
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte J., R. F. Doolittle: A simple method for displaying the hydropathic character of a protein. J Mol Biol 157, 105-132 (1982)
    • (1982) J Mol Biol , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 37
    • 0014349825 scopus 로고
    • The characterization of amino acid sequences in proteins by statistical methods
    • Zimmerman J. M., N. Eliezer, R. Simha: The characterization of amino acid sequences in proteins by statistical methods. J Theor Biol 21, 170-201 (1968)
    • (1968) J Theor Biol , vol.21 , pp. 170-201
    • Zimmerman, J.M.1    Eliezer, N.2    Simha, R.3
  • 38
    • 0020371598 scopus 로고
    • The structural dependence of amino acid hydrophobicity parameters
    • DOI 10.1016/0022-5193(82)90191-6
    • Charton M., B. I. Charton: The structural dependence of amino acid hydrophobicity parameters. J Theor Biol 99, 629-644 (1982) (Pubitemid 13192303)
    • (1982) Journal of Theoretical Biology , vol.99 , Issue.4 , pp. 629-644
    • Charton, M.1    Charton, B.I.2
  • 40
    • 0025969881 scopus 로고
    • Suggestions for "safe" residue substitutions in site-directed mutagenesis
    • Bordo D., P. Argos: Suggestions for "safe" residue substitutions in site-directed mutagenesis. J Mol Biol 217: 721-729 (1991) (Pubitemid 121003317)
    • (1991) Journal of Molecular Biology , vol.217 , Issue.4 , pp. 721-729
    • Bordo, D.1    Argos, P.2
  • 41
    • 33646876222 scopus 로고    scopus 로고
    • Prediction of HLA-DQ3.2β ligands: Evidence of multiple registers in class II binding peptides
    • DOI 10.1093/bioinformatics/btl071
    • Tong J. C., G. L. Zhang, T. W. Tan, J. T. August, V. Brusic, S. Ranganathan: Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides. Bioinformatics 22, 1232-1238 (2006) (Pubitemid 43779016)
    • (2006) Bioinformatics , vol.22 , Issue.10 , pp. 1232-1238
    • Tong, J.C.1    Zhang, G.L.2    Tan, T.W.3    August, J.T.4    Brusic, V.5    Ranganathan, S.6
  • 42
    • 0022446684 scopus 로고
    • Continuous and discontinuous protein antigenic determinants
    • Barlow D. J., M. S. Edwards, J. M. Thornton: Continuous and discontinuous protein antigenic determinants. Nature 322, 747-748 (1986) (Pubitemid 16074126)
    • (1986) Nature , vol.322 , Issue.6081 , pp. 747-748
    • Barlow, D.J.1    Edwards, M.S.2    Thornton, J.M.3
  • 44
    • 0344360732 scopus 로고    scopus 로고
    • Towards the in silico identification of class II restricted T-cell epitopes: A partial least squares iterative self-consistent algorithm for affinity prediction
    • DOI 10.1093/bioinformatics/btg312
    • Doytchinova I. A., D. R. Flower: Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction. Bioinformatics 19, 2263-2270 (2003) (Pubitemid 37492833)
    • (2003) Bioinformatics , vol.19 , Issue.17 , pp. 2263-2270
    • Doytchinova, I.A.1    Flower, D.R.2


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