-
1
-
-
34447299402
-
Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource
-
Adzhubei, A. A., A. V. Vlasova, H. Hagen-Larsen, T. A. Ruden, J. K. Laerdahl, and B. Hoyheim. Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource. BMC Genom., 8: 209 (2007).
-
(2007)
BMC Genom
, vol.8
, pp. 209
-
-
Adzhubei, A.A.1
Vlasova, A.V.2
Hagen-Larsen, H.3
Ruden, T.A.4
Laerdahl, J.K.5
Hoyheim, B.6
-
2
-
-
32944464648
-
Pathogen recognition and innate immunity
-
Akira, S., S. Uematsu, and O. Takeuchi. Pathogen recognition and innate immunity. Cell, 124: 783-801 (2006).
-
(2006)
Cell
, vol.124
, pp. 783-801
-
-
Akira, S.1
Uematsu, S.2
Takeuchi, O.3
-
3
-
-
29244448340
-
Microarray data analysis: From disarray to consolidation and consensus
-
Allison, D. B., X. Q. Cui. G. P. Page, and M. Sabripour. Microarray data analysis: From disarray to consolidation and consensus. Nat. Rev. Genet., 7: 55-65 (2006).
-
(2006)
Nat. Rev. Genet
, vol.7
, pp. 55-65
-
-
Allison, D.B.X.1
Cui, Q.2
Page, G.P.3
Sabripour, M.4
-
4
-
-
0035151325
-
Immune-relevant (including acute phase) genes identified in the livers of rainbow trout, Oncorhynchus mykiss, by means of suppression subtractive hybridization
-
Bayne, C. J., L. Gerwick. K. Fujiki, M. Nakao, and T. Yano. Immune-relevant (including acute phase) genes identified in the livers of rainbow trout, Oncorhynchus mykiss, by means of suppression subtractive hybridization. Dev. Comp. Immunol., 25: 205-217 (2001).
-
(2001)
Dev. Comp. Immunol
, vol.25
, pp. 205-217
-
-
Bayne, C.J.1
Gerwick, L.2
Fujiki, K.3
Nakao, M.4
Yano, T.5
-
5
-
-
33747152222
-
Advances in fish cytokine biology give clues to the evolution of a complex network
-
Bird. S., J. Zou, and C. J. Secombes. Advances in fish cytokine biology give clues to the evolution of a complex network. Curr. Pharmaceut. Design, 12: 3051-3069 (2006).
-
(2006)
Curr. Pharmaceut. Design
, vol.12
, pp. 3051-3069
-
-
Bird, S.1
Zou, J.2
Secombes, C.J.3
-
6
-
-
18344396568
-
Minimum information about a microanay experiment (MIAME) - Toward standards for microanay data
-
Brazma, A., P. Hingamp, J. Quackenbush, G. Sherlock, P. Spellman, C. Stoeckert, J. Aach, W. Ansorge, C. A. Ball. H. C. Causton, T. Gaasterland, P. Glenisson, F. C. P. Holstege, I. F. Kim, V. Markowitz, J. C. Matese, H. Parkinson, A. Robinson, U. Sarkans, S. Schulze-Kremer, J. Stewart, R. Taylor, J. Vilo, and M. Vingron. Minimum information about a microanay experiment (MIAME) - Toward standards for microanay data. Nat. Genet., 29: 365-371 (2001).
-
(2001)
Nat. Genet
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
Aach, J.7
Ansorge, W.8
Ball, C.A.9
Causton, H.C.10
Gaasterland, T.11
Glenisson, P.12
Holstege, F.C.P.13
Kim, I.F.14
Markowitz, V.15
Matese, J.C.16
Parkinson, H.17
Robinson, A.18
Sarkans, U.19
Schulze-Kremer, S.20
Stewart, J.21
Taylor, R.22
Vilo, J.23
Vingron, M.24
more..
-
7
-
-
33749864877
-
Stable expression of bioactive recombinant pleurocidin in a fish cell line
-
Brocal, I., A. Falco, V. Mas, A. Rocha, L. Perez, J. M. Coll, and A. Estepa. Stable expression of bioactive recombinant pleurocidin in a fish cell line. Appl. Microbiol. Biotechnol., 72: 1217-1228 (2006).
-
(2006)
Appl. Microbiol. Biotechnol
, vol.72
, pp. 1217-1228
-
-
Brocal, I.1
Falco, A.2
Mas, V.3
Rocha, A.4
Perez, L.5
Coll, J.M.6
Estepa, A.7
-
8
-
-
44749094658
-
Characterization of gamma-interferon responsive promoters in fish
-
Castro. R., S. A. M. Martin, S. Bird, J. Lamas, and C. J. Secombes. Characterization of gamma-interferon responsive promoters in fish. Mol. Immunol., 45: 3454-3462 (2008).
-
(2008)
Mol. Immunol
, vol.45
, pp. 3454-3462
-
-
Castro, R.1
Martin, S.A.M.2
Bird, S.3
Lamas, J.4
Secombes, C.J.5
-
9
-
-
0032528299
-
A reliable way of obtaining stable inducible clones
-
Chambard, J. C., and P. Pognonec. A reliable way of obtaining stable inducible clones. Nucl. Acids Res., 26: 3443-3444 (1998).
-
(1998)
Nucl. Acids Res
, vol.26
, pp. 3443-3444
-
-
Chambard, J.C.1
Pognonec, P.2
-
10
-
-
33744978512
-
Enhanced viability of a nervous necrosis virus-infected stable cell line over-expressing a fusion product of the zfBcl-x(L) and green fluorescent protein genes
-
Chen, S. P., H. L. Yang, H. Y. Lin, M. C. Chen, J. L. Wu, and J. R. Hong. Enhanced viability of a nervous necrosis virus-infected stable cell line over-expressing a fusion product of the zfBcl-x(L) and green fluorescent protein genes. J. Fish Dis., 29: 347-354 (2006).
-
(2006)
J. Fish Dis
, vol.29
, pp. 347-354
-
-
Chen, S.P.1
Yang, H.L.2
Lin, H.Y.3
Chen, M.C.4
Wu, J.L.5
Hong, J.R.6
-
11
-
-
84954964873
-
A program for smoothing scatterplots by robust locally weighted regression
-
Cleveland, W. S. Lowess - A program for smoothing scatterplots by robust locally weighted regression. Am. Statist., 35: 54-54 (1981).
-
(1981)
Am. Statist
, vol.35
, pp. 54-54
-
-
Cleveland, W.S.L.1
-
12
-
-
1642370448
-
An M×1 promoter-reporter system to study interferon pathways in rainbow trout
-
Collet, B., P. Boudinot. A. Benmansour, and C. J. Secombes. An M×1 promoter-reporter system to study interferon pathways in rainbow trout. Dev. Comp. Immunol., 28: 793-801 (2004).
-
(2004)
Dev. Comp. Immunol
, vol.28
, pp. 793-801
-
-
Collet, B.1
Boudinot, P.2
Benmansour, A.3
Secombes, C.J.4
-
13
-
-
13444278633
-
Construction and analysis of a secreting expression vector for fish cells
-
Collet, B., and Secombes, C. J. Construction and analysis of a secreting expression vector for fish cells. Vaccine, 23: 1534-1539 (2005).
-
(2005)
Vaccine
, vol.23
, pp. 1534-1539
-
-
Collet, B.1
Secombes, C.J.2
-
14
-
-
0031146141
-
Characterization of a long-term cell line (SHK-1) developed from the head kidney of Atlantic salmon (Salmo salar L)
-
Dannevig, B. H., B. E. Brudeseth, T. Gjoen, M. Rode, H. I. Wergeland, O. Evensen, and C. M. Press. Characterization of a long-term cell line (SHK-1) developed from the head kidney of Atlantic salmon (Salmo salar L). Fish Shellfish Immunol, 7: 213-226 (1997).
-
(1997)
Fish Shellfish Immunol
, vol.7
, pp. 213-226
-
-
Dannevig, B.H.1
Brudeseth, B.E.2
Gjoen, T.3
Rode, M.4
Wergeland, H.I.5
Evensen, O.6
Press, C.M.7
-
15
-
-
15844428981
-
Suppression subtractive hybridization: A method for generating differentially regulated or tissue-specific cDNA probes and libraries
-
Diatchenko. L., Y. F. C. Lau, A. P. Campbell, A. Chenchik, F. Moqadam, B. Huang, S. Lukyanov, K. Lukyanov. N. Gurskaya, E. D. Sverdlov, and P. D. Siebert. Suppression subtractive hybridization: A method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl. Acad. Sci. USA, 93: 6025-6030 (1996).
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 6025-6030
-
-
Diatchenko, L.1
Lau, Y.F.C.2
Campbell, A.P.3
Chenchik, A.4
Moqadam, F.5
Huang, B.6
Lukyanov, S.7
Lukyanov, K.8
Gurskaya, N.9
Sverdlov, E.D.10
Siebert, P.D.11
-
16
-
-
33846575226
-
Microanay studies of gene expression in fish
-
Douglas, S. E. Microanay studies of gene expression in fish. Omics - J. Integr. Biol., 10: 474-489 (2006).
-
(2006)
Omics - J. Integr. Biol
, vol.10
, pp. 474-489
-
-
Douglas, S.E.1
-
17
-
-
10944267202
-
Identification of genes differentially expressed in Atlantic salmon (Salmo salar) in response to infection by Aeromonas salmonicida using cDNA microanay technology
-
Ewart, K. V., J. C. Belanger, J. Williams. T. Karakach, S. Penny, S. C. M. Tsoi, R. C. Richards, and S. E. Douglas. Identification of genes differentially expressed in Atlantic salmon (Salmo salar) in response to infection by Aeromonas salmonicida using cDNA microanay technology. Dev. Comp. Immunol., 29: 333-347 (2005).
-
(2005)
Dev. Comp. Immunol
, vol.29
, pp. 333-347
-
-
Ewart, K.V.1
Belanger, J.C.2
Williams, J.3
Karakach, T.4
Penny, S.5
Tsoi, S.C.M.6
Richards, R.C.7
Douglas, S.E.8
-
18
-
-
0034832754
-
Fish cell lines as versatile tools in ecotoxicology: Assessment of cytotoxicity, cytochrome P4501A induction potential, and estrogenic activity of chemicals and environmental samples
-
Fent. K. Fish cell lines as versatile tools in ecotoxicology: Assessment of cytotoxicity, cytochrome P4501A induction potential, and estrogenic activity of chemicals and environmental samples. Toxicol. in Vitro, 15: 477-488 (2001).
-
(2001)
Toxicol. in Vitro
, vol.15
, pp. 477-488
-
-
Fent, K.1
-
19
-
-
0032138318
-
Development of a monocyte/macrophage- like cell line, RTS11, from rainbow trout spleen
-
Ganassin, R. C., and N. C. Bols. Development of a monocyte/macrophage- like cell line, RTS11, from rainbow trout spleen. Fish Shellfish Immunol., 8: 457-476 (1998).
-
(1998)
Fish Shellfish Immunol
, vol.8
, pp. 457-476
-
-
Ganassin, R.C.1
Bols, N.C.2
-
20
-
-
37849185741
-
Gene transcript changes in individual rainbow trout livers following an inflammatory stimulus
-
Gerwick, L., G. Corley-Smith, and C. J. Bayne. Gene transcript changes in individual rainbow trout livers following an inflammatory stimulus. Fish Shellfish Immunol., 22 : 157-171 (2007).
-
(2007)
Fish Shellfish Immunol
, vol.22
, pp. 157-171
-
-
Gerwick, L.1
Corley-Smith, G.2
Bayne, C.J.3
-
21
-
-
33748697895
-
Generation of a large scale repertoire of expressed sequence tags (ESTs) from normalized rainbow trout cDNA libraries
-
Govoroun, M., F. Le Gac, and Y. Guiguen. Generation of a large scale repertoire of expressed sequence tags (ESTs) from normalized rainbow trout cDNA libraries. BMC Genom., 7: (2006).
-
(2006)
BMC Genom
, vol.7
-
-
Govoroun, M.1
Le Gac, F.2
Guiguen, Y.3
-
22
-
-
29144462664
-
An EST-based approach for identifying genes expressed in the intestine and gills of pre-smolt Atlantic salmon (Salmo salar)
-
Hagen-Larsen, H., J. K. Laerdahl, F. Panitz, A. Adzhubei, and B. Hoyheim. An EST-based approach for identifying genes expressed in the intestine and gills of pre-smolt Atlantic salmon (Salmo salar). BMC Genom., 6: (2005).
-
(2005)
BMC Genom
, vol.6
-
-
Hagen-Larsen, H.1
Laerdahl, J.K.2
Panitz, F.3
Adzhubei, A.4
Hoyheim, B.5
-
23
-
-
39049137983
-
The biological effects of rainbow trout (Oncorhynchus mykiss) recombinant interleukin-8
-
Harun, O., J. Zou, Y. Zhang, P. Nie, and C. Secombes. The biological effects of rainbow trout (Oncorhynchus mykiss) recombinant interleukin-8. Dev. Comp. Immunol., 32: 673-681 (2008).
-
(2008)
Dev. Comp. Immunol
, vol.32
, pp. 673-681
-
-
Harun, O.1
Zou, J.2
Zhang, Y.3
Nie, P.4
Secombes, C.5
-
24
-
-
0005312194
-
Transfection of cultured fish cells with exogenous DNA
-
Heimlich, A., G. S. Bailey, and D. W. Barnes. Transfection of cultured fish cells with exogenous DNA. Cytotechnology, 1: 215-221 (1988).
-
(1988)
Cytotechnology
, vol.1
, pp. 215-221
-
-
Heimlich, A.1
Bailey, G.S.2
Barnes, D.W.3
-
25
-
-
1542645990
-
Retention of the developmental pluripotency in medaka embryonic stem cells after gene transfer and long-term drug selection for gene targeting in fish
-
Hong, Y. H., S. L. Chen, J. F. Gui, and M. Schartl. Retention of the developmental pluripotency in medaka embryonic stem cells after gene transfer and long-term drug selection for gene targeting in fish. Transgen. Res. 13: 41-50 (2004).
-
(2004)
Transgen. Res
, vol.13
, pp. 41-50
-
-
Hong, Y.H.1
Chen, S.L.2
Gui, J.F.3
Schartl, M.4
-
26
-
-
8844273294
-
Transgenic cell lines which stably express progestogen receptors (PRS) alpha and beta and the PR-responsive reporter genes
-
Ikeuchi, T., T. Kobayashi, T. Todo, and Y. Nagahama. Transgenic cell lines which stably express progestogen receptors (PRS) alpha and beta and the PR-responsive reporter genes. Fish Physiol. Biochem., 28: 151-151 (2003).
-
(2003)
Fish Physiol. Biochem
, vol.28
, pp. 151-151
-
-
Ikeuchi, T.1
Kobayashi, T.2
Todo, T.3
Nagahama, Y.4
-
27
-
-
33751313845
-
Cloning and expression analysis of an IL-6 homolog in rainbow trout (Oncorhynchus mykiss)
-
Iliev, D. B., B. Castellana, S. MacKenzie, J. V. Planas, and F. W. Goetz. Cloning and expression analysis of an IL-6 homolog in rainbow trout (Oncorhynchus mykiss). Mol. Immunol., 44: 1803-1807 (2007).
-
(2007)
Mol. Immunol
, vol.44
, pp. 1803-1807
-
-
Iliev, D.B.1
Castellana, B.2
MacKenzie, S.3
Planas, J.V.4
Goetz, F.W.5
-
29
-
-
3042719892
-
Response of rainbow trout transcriptome to model chemical contaminants
-
Koskinen, H., P. Pehkonen, E. Vehniainen, A. Krasnov, C. Rexroad, S. Afanasyev, H. Molsa, and A. Oikari. Response of rainbow trout transcriptome to model chemical contaminants. Biochem. Biophys. Res. Commun., 320: 745-753 (2004).
-
(2004)
Biochem. Biophys. Res. Commun
, vol.320
, pp. 745-753
-
-
Koskinen, H.1
Pehkonen, P.2
Vehniainen, E.3
Krasnov, A.4
Rexroad, C.5
Afanasyev, S.6
Molsa, H.7
Oikari, A.8
-
30
-
-
33750499960
-
Inhibition of nervous necrosis virus propagation by fish Mx proteins
-
Lin, C. H., J. A. C. John, C. H. Lin, and C. Y. Chang. Inhibition of nervous necrosis virus propagation by fish Mx proteins. Biochem. Biophys. Res. Commun., 351: 534-539 (2006).
-
(2006)
Biochem. Biophys. Res. Commun
, vol.351
, pp. 534-539
-
-
Lin, C.H.1
John, J.A.C.2
Lin, C.H.3
Chang, C.Y.4
-
31
-
-
22844435410
-
Innate immunity of fish (overview)
-
Magnadottir. B. Innate immunity of fish (overview). Fish Shellfish Immunol., 20: 137-151 (2006).
-
(2006)
Fish Shellfish Immunol
, vol.20
, pp. 137-151
-
-
Magnadottir, B.1
-
32
-
-
24044455869
-
-
Margulies, M, M. Egholm, W E. Altman, S. Attiya, J. S. Bader, L. A. Bemben, J. Berka, M. S. Braverman, Y. J. Chen, Z. T. Chen, S. B. Dewell, L. Du, J. M. Fierro, X. V. Gomes, B. C. Godwin, W. He, S. Helgesen, C. H. Ho, G. P. Irzyk, S. C. Jando, M. L. I. Alenquer, T. P. Jarvie, K. B. Jirage, J. B. Kim, J. R. Knight, J. R. Lanza, J. H. Leamon, S. M. Lefkowitz, M. Lei, J. Li, K. L. Lohman. H. Lu, V. B. Makhijani, K. E. McDade, M. P. McKenna, E. W. Myers, E. Nickerson, J. R. Nobile, R. Plant, B. P. Puc. M. T. Ronan, G. T. Roth, G. J. Sarkis. J. F. Simons, J. W. Simpson, M. Srinivasan, K. R. Tartaro, A. Tomasz, K. A. Vogt. G. A. Volkmer, S. H. Wang, Y. Wang, M. P. Weiner, P. G. Yu, R. F. Begley, and J. M. Rothberg. Genome sequencing in microfabricated high-density picolitre reactors. Nature, 437: 376-380 2005
-
Margulies, M., M. Egholm, W E. Altman, S. Attiya, J. S. Bader, L. A. Bemben, J. Berka, M. S. Braverman, Y. J. Chen, Z. T. Chen, S. B. Dewell, L. Du, J. M. Fierro, X. V. Gomes, B. C. Godwin, W. He, S. Helgesen, C. H. Ho, G. P. Irzyk, S. C. Jando, M. L. I. Alenquer, T. P. Jarvie, K. B. Jirage, J. B. Kim, J. R. Knight, J. R. Lanza, J. H. Leamon, S. M. Lefkowitz, M. Lei, J. Li, K. L. Lohman. H. Lu, V. B. Makhijani, K. E. McDade, M. P. McKenna, E. W. Myers, E. Nickerson, J. R. Nobile, R. Plant, B. P. Puc. M. T. Ronan, G. T. Roth, G. J. Sarkis. J. F. Simons, J. W. Simpson, M. Srinivasan, K. R. Tartaro, A. Tomasz, K. A. Vogt. G. A. Volkmer, S. H. Wang, Y. Wang, M. P. Weiner, P. G. Yu, R. F. Begley, and J. M. Rothberg. Genome sequencing in microfabricated high-density picolitre reactors. Nature, 437: 376-380 (2005).
-
-
-
-
33
-
-
33644941076
-
Transcriptome response following administration of a live bacterial vaccine in Atlantic salmon (Salmo salar)
-
Martin, S. A. M., S. C. Blaney, D. F. Houlihan, and C. J. Secombes. Transcriptome response following administration of a live bacterial vaccine in Atlantic salmon (Salmo salar). Mol. Immunol., 43: 1900-1911 (2006).
-
(2006)
Mol. Immunol
, vol.43
, pp. 1900-1911
-
-
Martin, S.A.M.1
Blaney, S.C.2
Houlihan, D.F.3
Secombes, C.J.4
-
34
-
-
37449010560
-
Interferon type I and type II responses in an Atlantic salmon (Salmo salar) SHK-1 cell line using the salmon TRAITS/SGP microanay
-
Martin. S. A. M., J. B. Taggart, P. J. Seear, J. E. Bron, R. Talbot, A. J. Teale, G. E. Sweeney, B. Hoyheim, D. F. Houlihan, D. R. Tocher. J. Zou, and C. J. Secombes. Interferon type I and type II responses in an Atlantic salmon (Salmo salar) SHK-1 cell line using the salmon TRAITS/SGP microanay. Physiol. Genom., 32: 33-44 (2007a).
-
(2007)
Physiol. Genom
, vol.32
, pp. 33-44
-
-
Martin, S.A.M.1
Taggart, J.B.2
Seear, P.J.3
Bron, J.E.4
Talbot, R.5
Teale, A.J.6
Sweeney, G.E.7
Hoyheim, B.8
Houlihan, D.F.9
Tocher, D.R.10
Zou, J.11
Secombes, C.J.12
-
35
-
-
34447539555
-
Directional responses following recombinant cytokine stimulation of rainbow trout (Oncorhynchus mykiss) RTS-11 macrophage cells as revealed by transcriptome profiling
-
Martin. S. A. M., J. Zou, D. F. Houlihan, and C. J. Secombes. Directional responses following recombinant cytokine stimulation of rainbow trout (Oncorhynchus mykiss) RTS-11 macrophage cells as revealed by transcriptome profiling. BMC Genom., 8: 150 (2007b).
-
(2007)
BMC Genom
, vol.8
, pp. 150
-
-
Martin, S.A.M.1
Zou, J.2
Houlihan, D.F.3
Secombes, C.J.4
-
36
-
-
0036179067
-
A transformed fish cell line expressing a green fluorescent protein-luciferase fusion gene responding to cellular stress
-
Molina, A., R. Carpeaux. J. A. Martial, and M. Muller. A transformed fish cell line expressing a green fluorescent protein-luciferase fusion gene responding to cellular stress. Toxicol. in Vitro, 16: 201-207 (2002).
-
(2002)
Toxicol. in Vitro
, vol.16
, pp. 201-207
-
-
Molina, A.1
Carpeaux, R.2
Martial, J.A.3
Muller, M.4
-
37
-
-
33745647259
-
Transcriptome profiling the gills of amoebic gill disease (AGD)-affected Atlantic salmon (Salmo salar L.): A role for tumor suppressor p53 in AGD pathogenesis?
-
Morrison. R. N., G. A. Cooper, B. F. Koop, M. L. Rise, A. R. Bridle, M. B. Adams, and B. F. Nowak. Transcriptome profiling the gills of amoebic gill disease (AGD)-affected Atlantic salmon (Salmo salar L.): A role for tumor suppressor p53 in AGD pathogenesis? Physiol. Genom., 26: 15-34 (2006).
-
(2006)
Physiol. Genom
, vol.26
, pp. 15-34
-
-
Morrison, R.N.1
Cooper, G.A.2
Koop, B.F.3
Rise, M.L.4
Bridle, A.R.5
Adams, M.B.6
Nowak, B.F.7
-
38
-
-
0036316141
-
Survey of transcript expression in rainbow trout leukocytes reveals a major contribution of interferon-responsive genes in the early response to a rhabdovirus infection
-
O'Fanell, C., N. Vaghefi, M. Cantonnet, B. Buteau, P. Boudinot, and A. Benmansour. Survey of transcript expression in rainbow trout leukocytes reveals a major contribution of interferon-responsive genes in the early response to a rhabdovirus infection. J. Virol., 76: 8040-8049 (2002).
-
(2002)
J. Virol
, vol.76
, pp. 8040-8049
-
-
O'Fanell, C.1
Vaghefi, N.2
Cantonnet, M.3
Buteau, B.4
Boudinot, P.5
Benmansour, A.6
-
39
-
-
52049115055
-
-
Parmigiani, G., E. S. Garrett, R. A. Irizarry, and S. L. Zeger. The analysis of gene expression data: An overview of methods and software, pp. 1-45. In: Statistics for Biology and Health (K. Dietz, M. Gail, K. Krickeberg, J. Samet, and A. Tsiatis, Eds.). New York: Springer (2003).
-
Parmigiani, G., E. S. Garrett, R. A. Irizarry, and S. L. Zeger. The analysis of gene expression data: An overview of methods and software, pp. 1-45. In: Statistics for Biology and Health (K. Dietz, M. Gail, K. Krickeberg, J. Samet, and A. Tsiatis, Eds.). New York: Springer (2003).
-
-
-
-
40
-
-
33645868644
-
Comprehensive gene expression profiling following DNA vaccination of rainbow trout against infectious hematopoietic necrosis virus
-
Purcell, M. K., K. M. Nichols, J. R. Winton, G. Kurath, G. H. Thorgaard, P. Wheeler. J. D. Hansen, R. P. Herwig, and L. K. Park. Comprehensive gene expression profiling following DNA vaccination of rainbow trout against infectious hematopoietic necrosis virus. Mol. Immunol., 43: 2089-2106 (2006).
-
(2006)
Mol. Immunol
, vol.43
, pp. 2089-2106
-
-
Purcell, M.K.1
Nichols, K.M.2
Winton, J.R.3
Kurath, G.4
Thorgaard, G.H.5
Wheeler, P.6
Hansen, J.D.7
Herwig, R.P.8
Park, L.K.9
-
42
-
-
1442348203
-
Sequence analysis of a rainbow trout cDNA library and creation of a gene index
-
Rexroad. C. E., Y. Lee, J. W. Keele, S. Karamycheva, G. Brown, B. Koop, S. A. Gahr, Y Palti, and J. Quackenbush. Sequence analysis of a rainbow trout cDNA library and creation of a gene index. Cytogenet. Genome Res., 102: 347-354 (2003).
-
(2003)
Cytogenet. Genome Res
, vol.102
, pp. 347-354
-
-
Rexroad, C.E.1
Lee, Y.2
Keele, J.W.3
Karamycheva, S.4
Brown, G.5
Koop, B.6
Gahr, S.A.7
Palti, Y.8
Quackenbush, J.9
-
43
-
-
15244347492
-
Microarray analyses identify molecular biomarkers of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis infection
-
Rise, M. L., S. R. M. Jones, G. D. Brown, K. R. von Schalburg, W. S. Davidson, and B. F. Koop. Microarray analyses identify molecular biomarkers of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis infection. Physiol. Genom., 20: 21-35 (2004a).
-
(2004)
Physiol. Genom
, vol.20
, pp. 21-35
-
-
Rise, M.L.1
Jones, S.R.M.2
Brown, G.D.3
von Schalburg, K.R.4
Davidson, W.S.5
Koop, B.F.6
-
44
-
-
12144288565
-
-
Rise. M. L., K. R. von Schalburg, G. D. Brown, M. A. Mawer, R. H. Devlin, N. Kuipers, M. Busby, M. Beetz-Sargent, R. Alberto, A. R. Gibbs, P. Hunt, R. Shukin, J. A. Zeznik, C. Nelson, S. R. M. Jones, D. E. Smailus, S. J. M. Jones. J. E. Schein, M. A. Marra, Y. S. N. Butterfield, J. M. Stott, S. H. S. Ng, W. S. Davidson, and B. F. Koop. Development and application of a salmonid EST database and cDNA microanay: Data mining and interspecific hybridization characteristics. Genome Res., 14: 478-490 (2004b).
-
Rise. M. L., K. R. von Schalburg, G. D. Brown, M. A. Mawer, R. H. Devlin, N. Kuipers, M. Busby, M. Beetz-Sargent, R. Alberto, A. R. Gibbs, P. Hunt, R. Shukin, J. A. Zeznik, C. Nelson, S. R. M. Jones, D. E. Smailus, S. J. M. Jones. J. E. Schein, M. A. Marra, Y. S. N. Butterfield, J. M. Stott, S. H. S. Ng, W. S. Davidson, and B. F. Koop. Development and application of a salmonid EST database and cDNA microanay: Data mining and interspecific hybridization characteristics. Genome Res., 14: 478-490 (2004b).
-
-
-
-
45
-
-
33748805500
-
Genome-wide survey of the gene expression response to saprolegniasis in Atlantic salmon
-
Roberge, C., D. J. Paez, O. Rossignol, H. Guderley, J. Dodson, and L. Bernatchez. Genome-wide survey of the gene expression response to saprolegniasis in Atlantic salmon. Mol. Immunol., 44: 1374-1383 (2007).
-
(2007)
Mol. Immunol
, vol.44
, pp. 1374-1383
-
-
Roberge, C.1
Paez, D.J.2
Rossignol, O.3
Guderley, H.4
Dodson, J.5
Bernatchez, L.6
-
46
-
-
28044467784
-
Use of a rainbow trout oligonucleotide microanay to determine transcriptional patterns in anatoxin B-1-induced hepatocellular carcinoma compared to adjacent liver
-
Tilton, S. C., L. G. Gerwick, J. D. Hendricks, C. S. Rosato, G. Corley-Smith, S. A. Givan, G. S. Bailey, C. J. Bayne, and D. E. Williams. Use of a rainbow trout oligonucleotide microanay to determine transcriptional patterns in anatoxin B-1-induced hepatocellular carcinoma compared to adjacent liver. Toxicol. Sci., 88: 319-330 (2005).
-
(2005)
Toxicol. Sci
, vol.88
, pp. 319-330
-
-
Tilton, S.C.1
Gerwick, L.G.2
Hendricks, J.D.3
Rosato, C.S.4
Corley-Smith, G.5
Givan, S.A.6
Bailey, G.S.7
Bayne, C.J.8
Williams, D.E.9
-
47
-
-
10944272186
-
Identification of immune-relevant genes from Atlantic salmon using suppression subtractive hybridization
-
Tsoi, S. C. M., K. V. Ewart, S. Penny, K. Melville, R. S. Liebscher, L. L. Brown, and S. E. Douglas. Identification of immune-relevant genes from Atlantic salmon using suppression subtractive hybridization. Mar. Biotechnol., 6: 199-214 (2004).
-
(2004)
Mar. Biotechnol
, vol.6
, pp. 199-214
-
-
Tsoi, S.C.M.1
Ewart, K.V.2
Penny, S.3
Melville, K.4
Liebscher, R.S.5
Brown, L.L.6
Douglas, S.E.7
-
48
-
-
0037015889
-
Tools for targeted manipulation of the mouse genome
-
Van der Weyden, L., D. J. Adams, and A. Bradley. Tools for targeted manipulation of the mouse genome. Physiol. Genom., 11: 133-164 (2002).
-
(2002)
Physiol. Genom
, vol.11
, pp. 133-164
-
-
Van der Weyden, L.1
Adams, D.J.2
Bradley, A.3
-
49
-
-
0346335584
-
Applications and needs of fish and shellfish cell culture for disease control in aquaculture
-
Villena, A. J. Applications and needs of fish and shellfish cell culture for disease control in aquaculture. Rev. Fish Biol. Fish., 13: 111-140 (2003).
-
(2003)
Rev. Fish Biol. Fish
, vol.13
, pp. 111-140
-
-
Villena, A.J.1
-
50
-
-
20044367625
-
An experimental evaluation of a loop versus a reference design for two-channel microanays
-
Vinciotti, V. R. Khanin, D. D'AHmonte, X. Liu, N. Cattini, G. Hotchkiss, G. Bucca, O. de Jesus, J. Rasaiyaah, C. P. Smith, P. Kellam, and E. Wit. An experimental evaluation of a loop versus a reference design for two-channel microanays. Bioinformatics, 21: 492-501 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 492-501
-
-
Vinciotti, V.1
Khanin, R.2
D'AHmonte, D.3
Liu, X.4
Cattini, N.5
Hotchkiss, G.6
Bucca, G.7
de Jesus, O.8
Rasaiyaah, J.9
Smith, C.P.10
Kellam, P.11
Wit, E.12
-
51
-
-
25444479154
-
Fish and chips: Various methodologies demonstrate utility of a 16,006-gene salmonid microanay
-
von Schalburg, K. R., M. L. Rise, G. A. Cooper, G. D. Brown, A. R. Gibbs, C. C. Nelson, W. S. Davidson, and B. F. Koop. Fish and chips: Various methodologies demonstrate utility of a 16,006-gene salmonid microanay. BMC Genomics, 6: 126 (2005).
-
(2005)
BMC Genomics
, vol.6
, pp. 126
-
-
von Schalburg, K.R.1
Rise, M.L.2
Cooper, G.A.3
Brown, G.D.4
Gibbs, A.R.5
Nelson, C.C.6
Davidson, W.S.7
Koop, B.F.8
-
52
-
-
14644398002
-
Cloning and expression of the first nonmammalian interleukin-11 gene in rainbow trout Oncorhynchus mykiss
-
Wang, T. H., J. W. Holland, N. Bols, and C. J. Secombes. Cloning and expression of the first nonmammalian interleukin-11 gene in rainbow trout Oncorhynchus mykiss. Febs J., 272: 1136-1147 (2005).
-
(2005)
Febs J
, vol.272
, pp. 1136-1147
-
-
Wang, T.H.1
Holland, J.W.2
Bols, N.3
Secombes, C.J.4
-
53
-
-
20644438444
-
Inhibition of reporter gene and Iridovirus-tiger frog virus in fish cell by RNA interference
-
Xie, J. F., L. Lu, M. Deng, S. P. Weng, J. Y. Zhu, Y Wu, L. Gan, S. M. Chan, and H. G. He. Inhibition of reporter gene and Iridovirus-tiger frog virus in fish cell by RNA interference. Virology, 338: 43-52 (2005).
-
(2005)
Virology
, vol.338
, pp. 43-52
-
-
Xie, J.F.1
Lu, L.2
Deng, M.3
Weng, S.P.4
Zhu, J.Y.5
Wu, Y.6
Gan, L.7
Chan, S.M.8
He, H.G.9
-
54
-
-
0036319960
-
Design issues for cDNA microanay experiments
-
Yang, Y. H., and T. Speed. Design issues for cDNA microanay experiments. Nat. Rev. Genet., 3: 579-588 (2002).
-
(2002)
Nat. Rev. Genet
, vol.3
, pp. 579-588
-
-
Yang, Y.H.1
Speed, T.2
-
55
-
-
23444445740
-
Identification and bioactivities of IFN-gamma in rainbow trout Oncorhynchus mykiss: The first Th1-type cytokine characterized functionally in fish
-
Zou, J., A. Carrington, B. Collet, J. M. Dijkstra, Y. Yoshiura. N. Bols, and C. Secombes. Identification and bioactivities of IFN-gamma in rainbow trout Oncorhynchus mykiss: The first Th1-type cytokine characterized functionally in fish. J. Immunol., 175: 2484-2494 (2005).
-
(2005)
J. Immunol
, vol.175
, pp. 2484-2494
-
-
Zou, J.1
Carrington, A.2
Collet, B.3
Dijkstra, J.M.4
Yoshiura, Y.5
Bols, N.6
Secombes, C.7
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