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Volumn 78, Issue 3, 2008, Pages

Kinetic Monte Carlo method for rule-based modeling of biochemical networks

Author keywords

[No Author keywords available]

Indexed keywords

AGGLOMERATION; CHEMICAL REACTIONS; GRAFTING (CHEMICAL); LAWS AND LEGISLATION; MANAGEMENT SCIENCE; MATHEMATICAL MODELS; MONTE CARLO METHODS; NUMERICAL ANALYSIS; PILES; RADIATION DAMAGE; SYNTHESIS (CHEMICAL); VECTORS;

EID: 51849129931     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.78.031910     Document Type: Article
Times cited : (85)

References (61)
  • 3
    • 0037458820 scopus 로고    scopus 로고
    • SCIEAS 0036-8075 10.1126/science.1080010
    • D. Bray, Science SCIEAS 0036-8075 10.1126/science.1080010 299, 1189 (2003).
    • (2003) Science , vol.299 , pp. 1189
    • Bray, D.1
  • 8
    • 0037453510 scopus 로고    scopus 로고
    • SCIEAS 0036-8075 10.1126/science.1083653
    • T. Pawson and P. Nash, Science SCIEAS 0036-8075 10.1126/science.1083653 300, 445 (2003).
    • (2003) Science , vol.300 , pp. 445
    • Pawson, T.1    Nash, P.2
  • 10
    • 0017030517 scopus 로고
    • JCTPAH 0021-9991 10.1016/0021-9991(76)90041-3
    • D. T. Gillespie, J. Comput. Phys. JCTPAH 0021-9991 10.1016/0021-9991(76) 90041-3 22, 403 (1976).
    • (1976) J. Comput. Phys. , vol.22 , pp. 403
    • Gillespie, D.T.1
  • 11
    • 33645429016 scopus 로고
    • JPCHAX 0022-3654 10.1021/j100540a008
    • D. T. Gillespie, J. Phys. Chem. JPCHAX 0022-3654 10.1021/j100540a008 81, 2340 (1977).
    • (1977) J. Phys. Chem. , vol.81 , pp. 2340
    • Gillespie, D.T.1
  • 12
    • 33644660951 scopus 로고    scopus 로고
    • edited by K. E. Sickafus, E. A. Kotomin, and B. P. Uberuaga (Springer, Dordrecht, The Netherlands
    • A. F. Voter, in Radiation Effects in Solids, edited by, K. E. Sickafus, E. A. Kotomin, and, B. P. Uberuaga, (Springer, Dordrecht, The Netherlands, 2007), p. 1.
    • (2007) Radiation Effects in Solids , pp. 1
    • Voter, A.F.1
  • 13
    • 34249950625 scopus 로고    scopus 로고
    • ARPLAP 0066-426X 10.1146/annurev.physchem.58.032806.104637
    • D. T. Gillespie, Annu. Rev. Phys. Chem. ARPLAP 0066-426X 10.1146/annurev.physchem.58.032806.104637 58, 35 (2007).
    • (2007) Annu. Rev. Phys. Chem. , vol.58 , pp. 35
    • Gillespie, D.T.1
  • 14
    • 14844289958 scopus 로고    scopus 로고
    • NABIF9 1087-0156 10.1038/nbt1054
    • L. Lok and R. Brent, Nat. Biotechnol. NABIF9 1087-0156 10.1038/nbt1054 23, 131 (2005).
    • (2005) Nat. Biotechnol. , vol.23 , pp. 131
    • Lok, L.1    Brent, R.2
  • 17
    • 0542389101 scopus 로고
    • IJMPEO 0129-1831 10.1142/S0129183195000216
    • T. Fricke and D. Wendt, Int. J. Mod. Phys. C IJMPEO 0129-1831 10.1142/S0129183195000216 6, 277 (1995).
    • (1995) Int. J. Mod. Phys. C , vol.6 , pp. 277
    • Fricke, T.1    Wendt, D.2
  • 18
    • 51849155833 scopus 로고    scopus 로고
    • JCRGAE 0022-0248
    • T. P. Schulze, J. Cryst. Growth JCRGAE 0022-0248 263, 505 (2004).
    • (2004) J. Cryst. Growth , vol.263 , pp. 505
    • Schulze, T.P.1
  • 21
    • 38049004035 scopus 로고    scopus 로고
    • JCTPAH 0021-9991 10.1016/j.jcp.2007.10.021
    • T. P. Shulze, J. Comput. Phys. JCTPAH 0021-9991 10.1016/j.jcp.2007.10.021 227, 2455 (2008).
    • (2008) J. Comput. Phys. , vol.227 , pp. 2455
    • Shulze, T.P.1
  • 33
  • 34
    • 0001096113 scopus 로고
    • PLEEE8 1063-651X 10.1103/PhysRevE.51.R867
    • J. L. Blue, I. Beichl, and F. Sullivan, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.51.R867 51, R867 (1995).
    • (1995) Phys. Rev. e , vol.51 , pp. 867
    • Blue, J.L.1    Beichl, I.2    Sullivan, F.3
  • 35
    • 0001144902 scopus 로고    scopus 로고
    • JPCHAX 0022-3654 10.1021/jp993732q
    • M. A. Gibson and J. Bruck, J. Phys. Chem. JPCHAX 0022-3654 10.1021/jp993732q 104, 1876 (2000).
    • (2000) J. Phys. Chem. , vol.104 , pp. 1876
    • Gibson, M.A.1    Bruck, J.2
  • 37
    • 0026675654 scopus 로고
    • JOIMA3 0022-1767
    • H. Metzger, J. Immunol. JOIMA3 0022-1767 149, 1477 (1992).
    • (1992) J. Immunol. , vol.149 , pp. 1477
    • Metzger, H.1
  • 38
    • 0036630357 scopus 로고    scopus 로고
    • IMRED2 0105-2896
    • H. Metzger, Immunol. Rev. IMRED2 0105-2896 185, 186 (2002).
    • (2002) Immunol. Rev. , vol.185 , pp. 186
    • Metzger, H.1
  • 50
    • 0032492834 scopus 로고    scopus 로고
    • JTBIAP 0022-5193 10.1006/jtbi.1997.0651
    • C. J. Morton-Firth and D. Bray, J. Theor. Biol. JTBIAP 0022-5193 10.1006/jtbi.1997.0651 192, 117 (1998).
    • (1998) J. Theor. Biol. , vol.192 , pp. 117
    • Morton-Firth, C.J.1    Bray, D.2
  • 52
    • 0034961694 scopus 로고    scopus 로고
    • BOINFP 1367-4803 10.1093/bioinformatics/17.6.575
    • N. Le Novére and T. S. Shimizu, Bioinformatics BOINFP 1367-4803 10.1093/bioinformatics/17.6.575 17, 575 (2001).
    • (2001) Bioinformatics , vol.17 , pp. 575
    • Le Novére, N.1    Shimizu, T.S.2
  • 53
    • 0002296942 scopus 로고
    • (a) JCTPAH 0021-9991 10.1016/0021-9991(75)90060-1
    • (a) A. B. Bortz, M. H. Kalos, and J. L. Lebowitz, J. Comput. Phys. JCTPAH 0021-9991 10.1016/0021-9991(75)90060-1 17, 10 (1975);
    • (1975) J. Comput. Phys. , vol.17 , pp. 10
    • Bortz, A.B.1    Kalos, M.H.2    Lebowitz, J.L.3
  • 54
    • 51849126328 scopus 로고    scopus 로고
    • (b)
    • (b) W. Fontana (private communication).
    • Fontana, W.1
  • 55
    • 33646150440 scopus 로고    scopus 로고
    • BIOJAU 0006-3495 10.1529/biophysj.105.072207
    • T. Zhang and R. Schwartz, Biophys. J. BIOJAU 0006-3495 10.1529/biophysj.105.072207 90, 57 (2006).
    • (2006) Biophys. J. , vol.90 , pp. 57
    • Zhang, T.1    Schwartz, R.2
  • 57
    • 0034680741 scopus 로고    scopus 로고
    • SCIEAS 0036-8075 10.1126/science.290.5495.1328
    • T. Tlusty and S. A. Safran, Science SCIEAS 0036-8075 10.1126/science.290. 5495.1328 290, 1328 (2000).
    • (2000) Science , vol.290 , pp. 1328
    • Tlusty, T.1    Safran, S.A.2
  • 59
    • 0001740502 scopus 로고    scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.82.5060
    • S. K. Kumar and A. Z. Panagiotopoulos, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.82.5060 82, 5060 (1999).
    • (1999) Phys. Rev. Lett. , vol.82 , pp. 5060
    • Kumar, S.K.1    Panagiotopoulos, A.Z.2
  • 60
    • 2842574379 scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.41.829
    • T. C. Lubensky and J. Isaacson, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.41.829 41, 829 (1978).
    • (1978) Phys. Rev. Lett. , vol.41 , pp. 829
    • Lubensky, T.C.1    Isaacson, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.