메뉴 건너뛰기




Volumn 12, Issue 5, 2008, Pages 636-643

Computational prediction models for early detection of risk of cardiovascular events using mass spectrometry data

Author keywords

Cardiovascular risk; Early disease detection; Mass spectrometry (MS); Prediction models; Proteomics

Indexed keywords

DISEASE CONTROL; FEATURE EXTRACTION; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETERS; MASS SPECTROMETRY; MATHEMATICAL MODELS; SPECTROMETERS; SPECTROMETRY; SPECTRUM ANALYSIS; STATISTICAL TESTS;

EID: 51749121574     PISSN: 10897771     EISSN: None     Source Type: Journal    
DOI: 10.1109/TITB.2007.908756     Document Type: Article
Times cited : (20)

References (39)
  • 2
    • 0035491167 scopus 로고    scopus 로고
    • B. L. Adam, A. Vlahou, O. J. Semmes, and G. L. Wright, Jr., Proteomic approaches to biomarker discovery in prostate and bladder cancers, Proteomics, 1, pp. 1264-1270, 2001.
    • B. L. Adam, A. Vlahou, O. J. Semmes, and G. L. Wright, Jr., "Proteomic approaches to biomarker discovery in prostate and bladder cancers," Proteomics, vol. 1, pp. 1264-1270, 2001.
  • 3
    • 0035712849 scopus 로고    scopus 로고
    • Advances in proteontic analysis by mass spectrometry
    • T. Griffin, T. Goodlett, and R. Aebersold, "Advances in proteontic analysis by mass spectrometry," Curr. Opin. Biotechnol., vol. 12, pp. 607-612, 2002.
    • (2002) Curr. Opin. Biotechnol , vol.12 , pp. 607-612
    • Griffin, T.1    Goodlett, T.2    Aebersold, R.3
  • 4
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • R. Aebersold and M. Mann, "Mass spectrometry-based proteomics," Nature, vol. 422, pp. 198-207, 2003.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 5
    • 51749121902 scopus 로고    scopus 로고
    • Proteomics
    • C. A. Orengo, D. T. Jones, and J. M. Thornton, Eds. Oxford, U.K, BIOS Scientific
    • M. P. Weir, W. P. Blackstock, and M. Twyman, "Proteomics," in Bioinformatics: Genes, Proteins & Computers, C. A. Orengo, D. T. Jones, and J. M. Thornton, Eds. Oxford, U.K.: BIOS Scientific, 2003, pp. 245-257.
    • (2003) Bioinformatics: Genes, Proteins & Computers , pp. 245-257
    • Weir, M.P.1    Blackstock, W.P.2    Twyman, M.3
  • 7
    • 33644953280 scopus 로고    scopus 로고
    • A machine learning perspective on the development of clinical decision support systems utilizing mass spectra of blood samples
    • H. Shin and M. K. Markey, "A machine learning perspective on the development of clinical decision support systems utilizing mass spectra of blood samples," J. Biomed. Inf., vol. 39, pp. 227-248, 2006.
    • (2006) J. Biomed. Inf , vol.39 , pp. 227-248
    • Shin, H.1    Markey, M.K.2
  • 8
    • 0037029709 scopus 로고    scopus 로고
    • Proteomic analysis of nipple aspirate fluid to detect biologic markers of breast cancer
    • E. R. Sauter, W. Zhu, X.-J. Fan, R. P. Wassell, I. Chervoneva, and G. C. Du Bois, "Proteomic analysis of nipple aspirate fluid to detect biologic markers of breast cancer," Br. J. Cancer, vol. 86, pp. 1440-1443, 2002.
    • (2002) Br. J. Cancer , vol.86 , pp. 1440-1443
    • Sauter, E.R.1    Zhu, W.2    Fan, X.-J.3    Wassell, R.P.4    Chervoneva, I.5    Du Bois, G.C.6
  • 11
    • 18344396961 scopus 로고    scopus 로고
    • An integrated approach utilizing artificial neural networks and SELDI mass spectrometry for the classification of human tumours and rapid identification of potential biomarkers
    • G. Ball, S. Mian, F. Holding, R. O. Allibone, J. Lowe, S. Ali, G. Li, S. McCardle, I. O. Ellis, C. Creaser, and R. C. Rees, "An integrated approach utilizing artificial neural networks and SELDI mass spectrometry for the classification of human tumours and rapid identification of potential biomarkers," Bioinformatics, vol. 18, pp. 395-404, 2002.
    • (2002) Bioinformatics , vol.18 , pp. 395-404
    • Ball, G.1    Mian, S.2    Holding, F.3    Allibone, R.O.4    Lowe, J.5    Ali, S.6    Li, G.7    McCardle, S.8    Ellis, I.O.9    Creaser, C.10    Rees, R.C.11
  • 12
    • 0742269626 scopus 로고    scopus 로고
    • Probabilistic disease classification of expression-dependent proteomic data from mass spectrometry of human serum
    • R. H. Lilien, H. Farid, and B. R. Donald, "Probabilistic disease classification of expression-dependent proteomic data from mass spectrometry of human serum," J. Comput. Biol., vol. 10, pp. 925-946, 2003.
    • (2003) J. Comput. Biol , vol.10 , pp. 925-946
    • Lilien, R.H.1    Farid, H.2    Donald, B.R.3
  • 13
    • 0347181849 scopus 로고    scopus 로고
    • A data review and re-assessment of ovarian cencer serum proteomic profiling
    • doi:10.1186/1471-2105-4-24
    • J. M. Sorace and M. Zhan, "A data review and re-assessment of ovarian cencer serum proteomic profiling," BMC Bioinf., vol. 4, p. 24, 2003. (doi:10.1186/1471-2105-4-24).
    • (2003) BMC Bioinf , vol.4 , pp. 24
    • Sorace, J.M.1    Zhan, M.2
  • 14
    • 0141738784 scopus 로고    scopus 로고
    • Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data
    • B. Wu, T. Abbott, D. Fishman, W. McMurray, G. Mor, K. Stone, D. Ward, K. Williams, and H. Zhao, "Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data," Bioinformatics, vol. 19, pp. 1636-1643, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 1636-1643
    • Wu, B.1    Abbott, T.2    Fishman, D.3    McMurray, W.4    Mor, G.5    Stone, K.6    Ward, D.7    Williams, K.8    Zhao, H.9
  • 15
    • 10244279272 scopus 로고    scopus 로고
    • Sample classification from protein mass spectrometry, by 'peak probability contrasts'
    • R. Tibshirani, T. Hastie, B. Narasimhan, S. Soltys, G. Shi, A. Koong, and Q.-T. Le, "Sample classification from protein mass spectrometry, by 'peak probability contrasts'," Bioinformatics, vol. 20, pp. 3034-3044, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 3034-3044
    • Tibshirani, R.1    Hastie, T.2    Narasimhan, B.3    Soltys, S.4    Shi, G.5    Koong, A.6    Le, Q.-T.7
  • 16
    • 18744384734 scopus 로고    scopus 로고
    • Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum
    • J. S. Morris, K. R. Coombes, J. Koomen, K. A. Baggerly, and R. Kobayashi, "Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum," Bioinformatics vol. 21, pp. 1764-1775, 2005.
    • (2005) Bioinformatics , vol.21 , pp. 1764-1775
    • Morris, J.S.1    Coombes, K.R.2    Koomen, J.3    Baggerly, K.A.4    Kobayashi, R.5
  • 17
    • 19544394460 scopus 로고    scopus 로고
    • Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data
    • J. S. Yu, S. Ongarello, R. Fiedler, X. W. Chen, G. Toffolo, C. Cobelli, and Z. Trajanoski, "Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data," Bioinformatics, vol. 21, pp. 2200-2209, 2005.
    • (2005) Bioinformatics , vol.21 , pp. 2200-2209
    • Yu, J.S.1    Ongarello, S.2    Fiedler, R.3    Chen, X.W.4    Toffolo, G.5    Cobelli, C.6    Trajanoski, Z.7
  • 18
    • 25444463295 scopus 로고    scopus 로고
    • Feature selection and nearest centroid classification for protein mass spectrometry
    • doi:10.1186/1471-2105-6-68
    • I. Levner, "Feature selection and nearest centroid classification for protein mass spectrometry," BMC Bioinf., vol. 6, p. 68, 2005. (doi:10.1186/1471-2105-6-68).
    • (2005) BMC Bioinf , vol.6 , pp. 68
    • Levner, I.1
  • 19
    • 11144254100 scopus 로고    scopus 로고
    • Quantifying reproducibility for differential proteomics: Noise analysis for protein liquid chromatography-mass spectrometry of human serum
    • M. Anderle, S. Roy, H. Lin, C. Becker, and K. Joho, "Quantifying reproducibility for differential proteomics: Noise analysis for protein liquid chromatography-mass spectrometry of human serum," Bioinformatics, vol. 20, pp. 3575-3582, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 3575-3582
    • Anderle, M.1    Roy, S.2    Lin, H.3    Becker, C.4    Joho, K.5
  • 22
    • 0037381236 scopus 로고    scopus 로고
    • Mass spectrometry-based diagnostics: The upcoming revolution in disease detection
    • E. F. Petricoin and L. A. Liotta, "Mass spectrometry-based diagnostics: The upcoming revolution in disease detection," Clin. Chem., vol. 49, pp.533-534,2003.
    • (2003) Clin. Chem , vol.49 , pp. 533-534
    • Petricoin, E.F.1    Liotta, L.A.2
  • 23
    • 0038662530 scopus 로고    scopus 로고
    • J. D. Wulfkuhle, L. A. Liotta, and and E. F. Petricoin, Proteomic applications for the early detection of cancer, Nature, 3, pp. 267-275, 2003.
    • J. D. Wulfkuhle, L. A. Liotta, and and E. F. Petricoin, "Proteomic applications for the early detection of cancer," Nature, vol. 3, pp. 267-275, 2003.
  • 24
    • 26244449114 scopus 로고    scopus 로고
    • Which diagnostic tests are most useful in a chest pain unit protocol?
    • doi:10.1186/1471-227X-5-6
    • S. Goodacre, T. Locker, J. Arnold, K. Angelini, and F. Morris, "Which diagnostic tests are most useful in a chest pain unit protocol?," BMC Emerg. Med., vol. 5, p. 6, 2005. (doi:10.1186/1471-227X-5-6).
    • (2005) BMC Emerg. Med , vol.5 , pp. 6
    • Goodacre, S.1    Locker, T.2    Arnold, J.3    Angelini, K.4    Morris, F.5
  • 25
    • 23744507255 scopus 로고    scopus 로고
    • Markers for early detection of cardiac diseases
    • A. Wu, "Markers for early detection of cardiac diseases," Scand. J. Clin. Lab. Investig., vol. 65, no. 240, pp. 112-121, 2005.
    • (2005) Scand. J. Clin. Lab. Investig , vol.65 , Issue.240 , pp. 112-121
    • Wu, A.1
  • 27
    • 0030449549 scopus 로고    scopus 로고
    • Selection of antino acid parameters for Fourier transform-based analysis of proteins
    • J. Lazovic, "Selection of antino acid parameters for Fourier transform-based analysis of proteins," CABIOS, vol. 12, pp. 553-562, 1996.
    • (1996) CABIOS , vol.12 , pp. 553-562
    • Lazovic, J.1
  • 28
    • 85032750863 scopus 로고    scopus 로고
    • Genomic signal processing
    • Jul
    • D. Anatassiou, "Genomic signal processing," IEEE Signal Process. Mag., vol. 18, no. 4, pp. 8-20, Jul. 2001.
    • (2001) IEEE Signal Process. Mag , vol.18 , Issue.4 , pp. 8-20
    • Anatassiou, D.1
  • 29
    • 0036224263 scopus 로고    scopus 로고
    • Protein sequence comparison based on the wavelet transform approach
    • C. H. de Trad, Q. Fang, and I. Cosic, "Protein sequence comparison based on the wavelet transform approach," Protein Eng, vol. 15, pp. 193-203, 2002.
    • (2002) Protein Eng , vol.15 , pp. 193-203
    • de Trad, C.H.1    Fang, Q.2    Cosic, I.3
  • 30
    • 11444250228 scopus 로고    scopus 로고
    • Genomics and proteomics: A signal processor's tour
    • Fourth Quarter
    • P. P. Vaidyanathan, "Genomics and proteomics: A signal processor's tour," IEEE Circuits Syst. Mag., vol. 4, no. 4, pp. 6-28, Fourth Quarter 2004.
    • (2004) IEEE Circuits Syst. Mag , vol.4 , Issue.4 , pp. 6-28
    • Vaidyanathan, P.P.1
  • 31
    • 33746611643 scopus 로고    scopus 로고
    • LPC cepstral distortion measure for protein sequence comparison
    • Jun
    • T. D. Pham, "LPC cepstral distortion measure for protein sequence comparison," IEEE Trans. Nanobiosci., vol. 5, no. 2, pp. 83-88, Jun. 2006.
    • (2006) IEEE Trans. Nanobiosci , vol.5 , Issue.2 , pp. 83-88
    • Pham, T.D.1
  • 37
    • 0014704814 scopus 로고
    • A statistical method for estimation of speech spectral density and formant frequencies
    • F. Itakura and S. Saito, "A statistical method for estimation of speech spectral density and formant frequencies," Electron. Commun. Jpn. vol. 53A, pp. 36-43, 1970.
    • (1970) Electron. Commun. Jpn , vol.53 A , pp. 36-43
    • Itakura, F.1    Saito, S.2
  • 38
    • 0032318171 scopus 로고    scopus 로고
    • A geostatistical model for linear prediction analysis of speech
    • T. D. Pham and M. Wagner, "A geostatistical model for linear prediction analysis of speech," Pattern Recognit., vol. 31, pp. 1981-1991, 1998.
    • (1998) Pattern Recognit , vol.31 , pp. 1981-1991
    • Pham, T.D.1    Wagner, M.2
  • 39
    • 0035575568 scopus 로고    scopus 로고
    • Personalized medicine: Revolutionizing drug discovery and patient care
    • G. S. Ginsburg and J. J. McCarthy, "Personalized medicine: Revolutionizing drug discovery and patient care," Trends Biotechnol vol. 19, pp. 491-496, 2001.
    • (2001) Trends Biotechnol , vol.19 , pp. 491-496
    • Ginsburg, G.S.1    McCarthy, J.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.