-
1
-
-
0038497542
-
A structure for DNA
-
April
-
J. D. Watson and F. H. C. Crick, "A structure for DNA," Nature, p. 737, April 1953.
-
(1953)
Nature
, vol.737
-
-
Watson, J.D.1
Crick, F.H.C.2
-
2
-
-
0004096392
-
-
Garland Publishing Inc., New York
-
B. Alberts, D. Bray, A. Johnson, J. Lewis, M. Raff, K. Roberts, and P. Walter, Essential Cell Biology, Garland Publishing Inc., New York, 1998.
-
(1998)
Essential Cell Biology
-
-
Alberts, B.1
Bray, D.2
Johnson, A.3
Lewis, J.4
Raff, M.5
Roberts, K.6
Walter, P.7
-
4
-
-
0003516147
-
-
Cambridge Univ. Press
-
R. Durbin, S. R. Eddy, A. Krogh, and G. Mitchison, Biological Sequence Analysis, Cambridge Univ. Press, 1998.
-
(1998)
Biological Sequence Analysis
-
-
Durbin, R.1
Eddy, S.R.2
Krogh, A.3
Mitchison, G.4
-
5
-
-
11444258726
-
Bioinformatics, part 1: Advances and challenges
-
Dec. Genomic Engineering, Nov. 2002
-
Proc. of IEEE special issues, Dec. 2000 (Genomic Engineering), Nov. 2002 (Bioinformatics, part 1: Advances and Challenges), and Dec. 2002 (Bioinformatics, part 2: Genomics and Proteomics Engineering).
-
(2000)
Proc. of IEEE Special Issues
-
-
-
6
-
-
11444257661
-
Bioinformatics, part 2: Genomics and proteomics engineering
-
Dec.
-
Proc. of IEEE special issues, Dec. 2000 (Genomic Engineering), Nov. 2002 (Bioinformatics, part 1: Advances and Challenges), and Dec. 2002 (Bioinformatics, part 2: Genomics and Proteomics Engineering).
-
(2002)
Proc. of IEEE Special Issues
-
-
-
7
-
-
0024610919
-
A tutorial on hidden Markov models and selected applications in speech recognition
-
Feb.
-
L. R. Rabiner, "A tutorial on hidden Markov models and selected applications in speech recognition," Proc. of the IEEE, vol. 77, no. 2, pp. 257-286, Feb. 1989.
-
(1989)
Proc. of the IEEE
, vol.77
, Issue.2
, pp. 257-286
-
-
Rabiner, L.R.1
-
9
-
-
1542742235
-
The role of signal processing concepts in genomics and proteomics
-
P. P. Vaidyanathan and B-J. Yoon, "The role of signal processing concepts in genomics and proteomics," Journal of the Franklin Institute, vol. 341, pp. 111-135, 2004.
-
(2004)
Journal of the Franklin Institute
, vol.341
, pp. 111-135
-
-
Vaidyanathan, P.P.1
Yoon, B.-J.2
-
11
-
-
0007534936
-
-
Vintage books, Random House, Inc., NY
-
J. D, Watson, Genes, Girls, and Gamow, Vintage books, Random House, Inc., NY, 2001.
-
(2001)
Genes, Girls, and Gamow
-
-
Watson, J.D.1
-
12
-
-
0141487875
-
-
(with Andrew Berry) Alfred A. Knopf, NY
-
J. D. Watson (with Andrew Berry) DNA: The Secret of Life, Alfred A. Knopf, NY, 2003.
-
(2003)
DNA: the Secret of Life
-
-
Watson, J.D.1
-
13
-
-
0028662507
-
Macromolecular bioactivity: Is It resonant interaction between macromolecules? - Theory and applications
-
Dec.
-
I. Cosic, "Macromolecular bioactivity: Is It resonant interaction between macromolecules? - theory and applications," IEEE. Trans. Biomedical Engr., vol. 41, no. 12, pp. 1101-1114, Dec. 1994.
-
(1994)
IEEE. Trans. Biomedical Engr.
, vol.41
, Issue.12
, pp. 1101-1114
-
-
Cosic, I.1
-
14
-
-
0032869848
-
Optimal structure for automatic processing of DNA sequences
-
Sept.
-
S. W. Davies, M. Eizenman, and S. Pasupathy, "Optimal structure for automatic processing of DNA sequences," IEEE Trans. on Biomedical Engr., vol. 46, no. 9, pp. 1044-1056, Sept. 1999.
-
(1999)
IEEE Trans. on Biomedical Engr.
, vol.46
, Issue.9
, pp. 1044-1056
-
-
Davies, S.W.1
Eizenman, M.2
Pasupathy, S.3
-
15
-
-
0032053975
-
Filter matrix estimation in automated DNA sequencing
-
April
-
W. Huang, D. R. Fuhrmann, D. G. Politte, L. J. Thomas, and D. J. States, "Filter matrix estimation In automated DNA sequencing," IEEE Trans. on Biomedical Engr., vol. 45, no. 4, pp. 422-428, April 1998.
-
(1998)
IEEE Trans. on Biomedical Engr.
, vol.45
, Issue.4
, pp. 422-428
-
-
Huang, W.1
Fuhrmann, D.R.2
Politte, D.G.3
Thomas, L.J.4
States, D.J.5
-
16
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
R. Koradi, M. Billeter, and K. Wthrich, "MOLMOL: A program for display and analysis of macromolecular structures," J. of Mol. Graphics, vol. 14, pp. 51-55, 1996.
-
(1996)
J. of Mol. Graphics
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wthrich, K.3
-
17
-
-
0036290642
-
Wavelet transforms for the characterization and detection of repeating motifs
-
K.B. Murray, D. Gorse, and J. M. Thornton, "Wavelet transforms for the characterization and detection of repeating motifs," J. Molecular Biology, vol. 316, pp. 341-363, 2002.
-
(2002)
J. Molecular Biology
, vol.316
, pp. 341-363
-
-
Murray, K.B.1
Gorse, D.2
Thornton, J.M.3
-
18
-
-
0345983655
-
Investigation of the structural and functional relationships of oncogene proteins
-
Dec.
-
E. Pirogova, Q. Fang, M. Akay, and I. Cosic, "Investigation of the structural and functional relationships of oncogene proteins," Proc. of the IEEE, vol. 90, no. 12, pp. 1859-1867, Dec. 2002.
-
(2002)
Proc. of the IEEE
, vol.90
, Issue.12
, pp. 1859-1867
-
-
Pirogova, E.1
Fang, Q.2
Akay, M.3
Cosic, I.4
-
19
-
-
21744462818
-
Identification and location of hot spots in proteins using the short-time Fourier transform
-
CA, Nov.
-
P. Ramachandran, A. Antoniou, and P. P. Vaidyanathan, "Identification and location of hot spots in proteins using the short-time Fourier transform," presented at IEEE Asilomar Conference on Signals, Systems, and Computers, Monterey, CA, Nov. 2004.
-
(2004)
IEEE Asilomar Conference on Signals, Systems, and Computers, Monterey
-
-
Ramachandran, P.1
Antoniou, A.2
Vaidyanathan, P.P.3
-
20
-
-
0037447260
-
Frequency domain analysis of noise in autoregulated gene circuits
-
April 15
-
M. L. Simpson, C. D. Cox, and G. S. Sayler, "Frequency domain analysis of noise in autoregulated gene circuits," Proc. of the Nat. Academy of Sci., vol. 100, no. 8, pp. 4551-4556, April 15, 2003.
-
(2003)
Proc. of the Nat. Academy of Sci.
, vol.100
, Issue.8
, pp. 4551-4556
-
-
Simpson, M.L.1
Cox, C.D.2
Sayler, G.S.3
-
21
-
-
5644289657
-
Engineering in the biological substrate: Information processing in genetic circuits
-
May
-
M. L. Simpson, C. D. Cox, G. D. Peterson, and G. S. Sayler, "Engineering in the biological substrate: Information processing in genetic circuits," Proc. of the IEEE, vol. 92, no. 5, pp. 848-863, May 2004.
-
(2004)
Proc. of the IEEE
, vol.92
, Issue.5
, pp. 848-863
-
-
Simpson, M.L.1
Cox, C.D.2
Peterson, G.D.3
Sayler, G.S.4
-
22
-
-
1542568040
-
Spectrogram analysis of genomes
-
Dec.
-
D. Sussillo, A. Kundaje, and D. Anastassiou, "Spectrogram analysis of genomes," Eurasip J. of Applied Signal Processing, vol. 2003, no. 4, Dec. 2003.
-
(2003)
Eurasip J. of Applied Signal Processing
, vol.2003
, Issue.4
-
-
Sussillo, D.1
Kundaje, A.2
Anastassiou, D.3
-
23
-
-
1542778368
-
Iterative deconvolution for automatic base scaling of the DNA electrophoresis time series
-
Raleigh, NC, Oct.
-
X-P. Zhang and D. Allison, "Iterative deconvolution for automatic base scaling of the DNA electrophoresis time series," presented at Workshop on Genomic Sig. Proc. and Stat., Raleigh, NC, Oct. 2002.
-
(2002)
Workshop on Genomic Sig. Proc. and Stat.
-
-
Zhang, X.-P.1
Allison, D.2
-
24
-
-
0000377189
-
The gene prediction problem: An overview for developers
-
J. W. Fickett, "The gene prediction problem: An overview for developers," Computers Chem., vol. 20, no. 1, pp. 103-118, 1996.
-
(1996)
Computers Chem.
, vol.20
, Issue.1
, pp. 103-118
-
-
Fickett, J.W.1
-
25
-
-
0027944605
-
A hidden Markov model that finds genes in E. Coll DNA
-
A. Krogh, I. Saira Mian, and D. Haussler, "A hidden Markov model that finds genes in E. Coll DNA," Nucleic Acids Research, vol. 22, pp. 4768-4778, 1994.
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 4768-4778
-
-
Krogh, A.1
Saira Mian, I.2
Haussler, D.3
-
26
-
-
0032518163
-
Microbial gene Identification using interpolated Markov models
-
S. L. Salzberg, A. L. Deicher, S. Kaslf, and O. White, "Microbial gene Identification using interpolated Markov models," Nucleic Acids Research, vol. 26, no. 2, pp. 544-548, 1998.
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.2
, pp. 544-548
-
-
Salzberg, S.L.1
Deicher, A.L.2
Kaslf, S.3
White, O.4
-
27
-
-
0031010292
-
Prediction of probable genes by Fourier analysis of genomic sequences
-
S. Tiwari, S. Ramachandran, A. Bhattacharya, S. Bhattacharya, and R. Ramaswamy, "Prediction of probable genes by Fourier analysis of genomic sequences," CABIOS, vol. 13, no. 3, pp. 263-270, 1997.
-
(1997)
CABIOS
, vol.13
, Issue.3
, pp. 263-270
-
-
Tiwari, S.1
Ramachandran, S.2
Bhattacharya, A.3
Bhattacharya, S.4
Ramaswamy, R.5
-
29
-
-
0038643716
-
Digital filters for gene prediction applications
-
CA, Nov.
-
P. P. Vaidyanathan and B-J. Yoon, "Digital filters for gene prediction applications," presented at IEEE Asilomar Conference on Signals, Systems, and Computers, Monterey, CA, Nov. 2002.
-
(2002)
IEEE Asilomar Conference on Signals, Systems, and Computers, Monterey
-
-
Vaidyanathan, P.P.1
Yoon, B.-J.2
-
30
-
-
84860065996
-
-
National Center for Biotechnology Information, Available: http://www.ncbi.nlm.nih.gov/.
-
-
-
-
31
-
-
0001247671
-
Multiscaled randomness: A possible source of 1/f noise in biology
-
August
-
H. Hausdorff and C.-K. Peng, "Multiscaled randomness: A possible source of 1/f noise in biology," Physical Review E, vol. 54, no. 2, pp. 2154-2157, August 1996.
-
(1996)
Physical Review E
, vol.54
, Issue.2
, pp. 2154-2157
-
-
Hausdorff, H.1
Peng, C.-K.2
-
32
-
-
0032001782
-
Interpreting correlations in biosequences
-
H. Herzel, E. N. Trifonov, O. Weiss, and I. Groβe, "Interpreting correlations in biosequences," Physica A, vol. 249, pp. 449-459, 1998.
-
(1998)
Physica A
, vol.249
, pp. 449-459
-
-
Herzel, H.1
Trifonov, E.N.2
Weiss, O.3
Grobe, I.4
-
33
-
-
11744345465
-
Expansion-modification systems: A model for spatial 1/f spectra
-
May
-
W. Li, "Expansion-modification systems: A model for spatial 1/f spectra," Physical Review A, The American Physical Society, vol. 43, no. 10, pp. 5240-5260, May 1991.
-
(1991)
Physical Review A, the American Physical Society
, vol.43
, Issue.10
, pp. 5240-5260
-
-
Li, W.1
-
34
-
-
0031298464
-
The study of correlation structures of DNA sequences: A critical review
-
W. Li, "The study of correlation structures of DNA sequences: A critical review," Computers Chem., vol. 21, no. 4, pp. 257-271, 1997.
-
(1997)
Computers Chem.
, vol.21
, Issue.4
, pp. 257-271
-
-
Li, W.1
-
35
-
-
0026585152
-
Long-range correlations in nucleotide sequences
-
March
-
C. K. Peng, S. V. Buldyrev, A. L. Goldberger, S. Havlin, F. Sciortino, M. Simons, and H.E. Stanley, "Long-range correlations in nucleotide sequences," Nature, vol. 356, pp. 168-170, March 1992.
-
(1992)
Nature
, vol.356
, pp. 168-170
-
-
Peng, C.K.1
Buldyrev, S.V.2
Goldberger, A.L.3
Havlin, S.4
Sciortino, F.5
Simons, M.6
Stanley, H.E.7
-
36
-
-
0001415964
-
The pitch of chromatin DNA is reflected in Its nucleotide sequence
-
E. N. Trifonov and J. L. Sussman, "The pitch of chromatin DNA is reflected In Its nucleotide sequence," Proc. of the Nat. Acad. Sci., USA, vol. 77, pp. 3816-3820, 1980.
-
(1980)
Proc. of the Nat. Acad. Sci., USA
, vol.77
, pp. 3816-3820
-
-
Trifonov, E.N.1
Sussman, J.L.2
-
37
-
-
0033232146
-
Statistics of DNA sequences: A low-frequency analysis
-
Nov.
-
M. de Sousa Vieira, "Statistics of DNA sequences: A low-frequency analysis," Physical Review E, The American Physical Society, vol. 60, no. 5, pp. 5932-5937, Nov. 1999.
-
(1999)
Physical Review E, the American Physical Society
, vol.60
, Issue.5
, pp. 5932-5937
-
-
De Sousa Vieira, M.1
-
38
-
-
0000204878
-
Evolution of long-range fractal correlations and 1/f noise in DNA base sequences
-
June
-
R. F. Voss, "Evolution of long-range fractal correlations and 1/f noise in DNA base sequences," Physical Review Letters, vol. 68, no. 25, pp. 3805-3808, June 1992.
-
(1992)
Physical Review Letters
, vol.68
, Issue.25
, pp. 3805-3808
-
-
Voss, R.F.1
-
39
-
-
0025462413
-
A Karhunen-Loeve-like expansion for 1/f processes via wavelets
-
July
-
G. W. Wornell, "A Karhunen-Loeve-like expansion for 1/f processes via wavelets," IEEE Trans. on Information Theory, vol. 36, no. 4, pp. 859-861, July 1990.
-
(1990)
IEEE Trans. on Information Theory
, vol.36
, Issue.4
, pp. 859-861
-
-
Wornell, G.W.1
-
40
-
-
17744382990
-
Correlation property of length sequences based on global structure of the complete genome
-
Z-G. Yu, V. V. Anh, and B. Wang, "Correlation property of length sequences based on global structure of the complete genome," Physical Review E, The American Physical Society, vol. 63, pp. 011903-1-011903-8, 2000.
-
(2000)
Physical Review E, the American Physical Society
, vol.63
, pp. 119031-119038
-
-
Yu, Z.-G.1
Anh, V.V.2
Wang, B.3
-
41
-
-
0035656688
-
Noncoding RNA genes and the modern RNA world
-
Dec.
-
S. R. Eddy, "Noncoding RNA genes and the modern RNA world," Nature Reviews, GENETICS, vol. 2, pp. 919-929, Dec. 2001.
-
(2001)
Nature Reviews, GENETICS
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
42
-
-
0037133945
-
Computational genomics of noncoding RNA genes
-
April
-
S. R. Eddy, "Computational genomics of noncoding RNA genes," Cell, vol. 109, pp. 137-140, April 2002.
-
(2002)
Cell
, vol.109
, pp. 137-140
-
-
Eddy, S.R.1
-
43
-
-
0142231860
-
The unseen Genome: Gems among junk
-
Nov.
-
W. W. Gibbs, "The unseen Genome: Gems among junk," Scientific American, pp. 48-53, Nov. 2003.
-
(2003)
Scientific American
, pp. 48-53
-
-
Gibbs, W.W.1
-
44
-
-
0346991453
-
The unseen Genome: Beyond DNA
-
Dec.
-
W. W. Gibbs, "The unseen Genome: Beyond DNA," Scientific American, pp. 108-113, Dec. 2003.
-
(2003)
Scientific American
, pp. 108-113
-
-
Gibbs, W.W.1
-
47
-
-
0028520437
-
The origin of life on earth
-
Oct.
-
L. E. Orgel, "The origin of life on earth," Scientific American, pp. 77-83, Oct. 1994.
-
(1994)
Scientific American
, pp. 77-83
-
-
Orgel, L.E.1
-
48
-
-
0035806973
-
Computational Identification of noncoding RNAs in E. Coll
-
Sept.
-
E. Rivas, R. J. Klein, T. A. Jones, and S. R. Eddy, "Computational Identification of noncoding RNAs in E. Coll," Current Biology, vol. 11, pp. 1369-1373, Sept. 2001.
-
(2001)
Current Biology
, vol.11
, pp. 1369-1373
-
-
Rivas, E.1
Klein, R.J.2
Jones, T.A.3
Eddy, S.R.4
-
49
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
May
-
G. Storz, "An expanding universe of noncoding RNAs," Science, vol. 296, pp. 1260-1263, May 2002.
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, G.1
-
50
-
-
84860066702
-
Biological Dark matter
-
Jan. 12
-
J. Travis, "Biological Dark matter," Science News Online, Jan. 12, 2002. Available: www.sciencenews.org/articles /20020112/bob9.asp.
-
(2002)
Science News Online
-
-
Travis, J.1
-
51
-
-
21644437291
-
HMM with auxiliary memory: A new tool for modelling RNA secondary structures
-
CA, Nov.
-
B-J. Yoon and P. P. Vaidyanathan, "HMM with auxiliary memory: A new tool for modelling RNA secondary structures," presented at IEEE Asilomar Conference on Signals, Systems, and Computers, Monterey, CA, Nov. 2004.
-
(2004)
IEEE Asilomar Conference on Signals, Systems, and Computers, Monterey
-
-
Yoon, B.-J.1
Vaidyanathan, P.P.2
-
52
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
Aug.
-
O. Alter, P. O. Brown, and D. Botstein, "Singular value decomposition for genome-wide expression data processing and modeling," Proc. of the Natl. Acad of Sci., USA, vol. 97, no. 18, pp. 10101-10106, Aug. 2000.
-
(2000)
Proc. of the Natl. Acad of Sci., USA
, vol.97
, Issue.18
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
53
-
-
0037452966
-
Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms
-
March
-
O. Alter, P. O. Brown, and D. Botstein, "Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms," Proc. of the Natl. Acad. of Sci., USA, vol. 100, no. 6, pp. 3351-3356, March 2003.
-
(2003)
Proc. of the Natl. Acad. of Sci., USA
, vol.100
, Issue.6
, pp. 3351-3356
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
54
-
-
84984932472
-
Exploring the new world of the genome with DNA microarrays
-
Jan.
-
P. O. Brown and D. Botstein, "Exploring the new world of the genome with DNA microarrays," Nature Genetics Supplement, vol. 21, pp. 33-37, Jan. 1999.
-
(1999)
Nature Genetics Supplement
, vol.21
, pp. 33-37
-
-
Brown, P.O.1
Botstein, D.2
-
55
-
-
0036771854
-
Technology against terror
-
Oct.
-
R. Casagrande, "Technology against terror," Scientific American, pp. 82-87, Oct. 2002.
-
(2002)
Scientific American
, pp. 82-87
-
-
Casagrande, R.1
-
56
-
-
84984934048
-
DNA microarrays in drug discovery and development
-
Jan.
-
C. Debouck and P. N. Goodfellow, "DNA microarrays in drug discovery and development," Nature Genetics Supplement, vol. 21, pp. 48-50, Jan. 1999.
-
(1999)
Nature Genetics Supplement
, vol.21
, pp. 48-50
-
-
Debouck, C.1
Goodfellow, P.N.2
-
58
-
-
0035296987
-
Making chips to probe genes
-
March
-
S. K. Moore, "Making chips to probe genes," IEEE Spectrum, vol. 38, no. 3, pp. 54-60, March 2001.
-
(2001)
IEEE Spectrum
, vol.38
, Issue.3
, pp. 54-60
-
-
Moore, S.K.1
-
59
-
-
0036489321
-
Iterative normalization of cDNA microarray data
-
March
-
Y. Wang, J. Lu, R. Lee, Z. Gu, and R. Clarke, "Iterative normalization of cDNA microarray data," IEEE Trans. Info. Tech, in Biomed, vol. 6, no. l, pp. 29-37, March 2002.
-
(2002)
IEEE Trans. Info. Tech, in Biomed
, vol.6
, Issue.50
, pp. 29-37
-
-
Wang, Y.1
Lu, J.2
Lee, R.3
Gu, Z.4
Clarke, R.5
-
60
-
-
0002700801
-
Computing with DNA
-
Aug.
-
L. M. Adleman "Computing with DNA," Scientific American, pp. 54-61, Aug. 1998.
-
(1998)
Scientific American
, pp. 54-61
-
-
Adleman, L.M.1
-
61
-
-
0003415652
-
-
Addison Wesley Publ. Co., Reading, MA
-
A. V. Aho, J. E. Hopcroft, and J. D. Ullman, The Design and Analysis of Computer Algorithms, Addison Wesley Publ. Co., Reading, MA, 1974.
-
(1974)
The Design and Analysis of Computer Algorithms
-
-
Aho, A.V.1
Hopcroft, J.E.2
Ullman, J.D.3
-
63
-
-
0004156508
-
-
Prentice Hall, Inc., Englewood Cliffs, NJ
-
H. R. Lewis and C. H. Papadimitriou, Elements of the Theory of Computation, Prentice Hall, Inc., Englewood Cliffs, NJ, 1981.
-
(1981)
Elements of the Theory of Computation
-
-
Lewis, H.R.1
Papadimitriou, C.H.2
-
64
-
-
0021442830
-
Interpolated finite Impulse response filters
-
June
-
Y. Neuvo, C.-Y. Dong, and S. K. Mitra, "Interpolated finite Impulse response filters," IEEE Trans., on ASSP, pp. 563-570, June 1984.
-
(1984)
IEEE Trans., on ASSP
, pp. 563-570
-
-
Neuvo, Y.1
Dong, C.-Y.2
Mitra, S.K.3
-
67
-
-
0004244302
-
-
Prentice Hall, Inc., Englewood Cliffs, NJ
-
L. R. Rabiner and B-H. Juang, Fundamentals of Speech Recognition, Prentice Hall, Inc., Englewood Cliffs, NJ, 1993.
-
(1993)
Fundamentals of Speech Recognition
-
-
Rabiner, L.R.1
Juang, B.-H.2
|