Influence of nanometric holes on the sensitivity of a waveguide-mode sensor: Label-free nanosensor for the analysis of RNA aptamer-ligand interactions

Analytical Chemistry

Volumn 80, Issue 17, 2008, Pages 6602-6609

  Gopinath, Subash C B ^a   Awazu, Koichi ^a   Fujimaki, Makoto ^a   Sugimoto, Katsuaki ^b   Ohki, Yoshimichi ^b   Komatsubara, Tetsuro ^c   Tominaga, Junji ^a   Gupta, Kailash C ^d   Kumar, Penmetcha K R ^a  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^b WASEDA UNIVERSITY   (Japan)

^c UNIVERSITY OF TSUKUBA   (Japan)

^d CSIR INSTITUTE OF GENOMICS AND INTEGRATIVE BIOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ACIDS; ADSORPTION; FLOW INTERACTIONS; LIGANDS; MOLECULAR BIOLOGY; MOLECULES; NUCLEIC ACIDS; OPTICAL PROPERTIES; PLASMAS; REFRACTIVE INDEX; RNA; SENSORS;

LIGAND INTERACTIONS; LOCAL INDEX; NANO SENSORS; NANOMETRIC HOLES;

SENSITIVITY ANALYSIS;

APTAMER; BIOTIN; BLOOD CLOTTING FACTOR 11A; CYANOCOBALAMIN; LIGAND; STREPTAVIDIN;

AMINO ACID SEQUENCE; ARTICLE; MEASUREMENT; NANOSENSOR; PROTEIN INTERACTION; PROTEIN SYNTHESIS; RNA ANALYSIS;

APTAMERS, NUCLEOTIDE; BIOSENSING TECHNIQUES; BIOTIN; LIGANDS; NANOTECHNOLOGY; PROTEIN BINDING; SENSITIVITY AND SPECIFICITY; STAINING AND LABELING; STREPTAVIDIN;

EID: 51549119950     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac800767s     Document Type: Article

References (28)

1. Fujimaki, M.; Rockstuhl, C.; Wang, X.; Awazu, K.; Tominaga, J.; Ikeda, T.; Ohki, Y.; Komatsubara, T. Microelectron. Eng. 2007, 84, 1685-1689.
2. Kretschmann, E. Z. Phys. 1971, 241, 313-324.
3. Liedberg, B.; Nylander, C.; Lundström, I. Sens. Actuators 1983, 4, 299-304.
4. McDonnell, J. M. Curr. Opin. Chem. Biol. 2001, 5, 572-577.
5. Majka, J.; Speck, C. Adv. Biochem. Eng. Biotechnol. 2007, 104, 13-36.
6. Katsamba, P. S.; Park, S.; Laird-Offringa, I. A. Methods 2002, 26, 95-104.
7. Quinn, J. G.; O'Neill, S.; Doyle, A.; McAtamney, C.; Diamond, D.; MacCraith, B. D.; Kennedy, R. Anal. Biochem. 2000, 281, 135-143.
8. Peterlinz, K. A.; Georgiadis, R. M. J. Am. Chem. Soc. 1997, 119, 3401-3402.
9. Gopinath, S. C. B.; Misono, T.; Mizuno, T.; Kawasaki, K.; Kumar, P.K.R. J. Gen. Virol. 2006, 87, 479-487.
10. Gopinath, S. C. B. Anal. Bioanal. Chem. 2007, 387, 171-82.
11. Hwang, J.; Fauzi, H.; Fukuda, K.; Sekiya, S.; Kakiuchi, N.; Shimotohno, K.; Taira, K.; Kusakabe, I.; Nishikawa, S. Biochem. Biophys. Res. Commun. 2000, 279, 557-562.
12. Misono, T. S.; Kumar, P. K. R. Anal. Biochem. 2005, 342, 312-317.
13. Tang, Q.; Su, X.; Loh, K. P. J. Colloid Interface Sci. 2007, 315, 99-106.
14. Busse, S.; Scheumann, V.; Menges, B.; Mittler, S. Biosens. Bioelectron. 2002, 17, 704-710.
15. Qi, Z.; Matsuda, N.; Santos, J.; Yoshida, T.; Takatsu, A.; Kato, K. J. Colloid Interface Sci. 2004, 271, 249-253.
16. Zhu, P.; Shelton, D. R.; Karns, J. S.; Sundaram, A.; Li, S.; Amstutz, P.; Tang, C. Biosens. Bioelectron. 2005, 21, 678-683.
17. Francois, P.; Charbonnier, Y.; Jacquet, J.; Utinger, D.; Bento, M.; Lew, D.; Kresback, G. M.; Ehrat, M.; Schlegel, W.; Schrenzel, J. J. Microbiol. Methods 2006, 65, 390-403.
18. Zourob, M.; Mohr, S.; Treves Brown, B. J.; Fielden, P. R.; McDonnell, M. B.; Goddard, N. J. Biosens. Bioelectron. 2005, 21, 293-302.
19. Wu, P.; Hogrebe, P.; Grainger, D. W. Biosens. Bioelectron. 2006, 21, 1252-63.
20. Awazu, K.; Rockstuhl, C.; Fujimaki, M.; Fukuda.; Tominaga, J.; Komatsubara, T.; Ikeda, T.; Ohki, Y. Optic. Express 2007, 15, 2592-2597.
21. Lau, K. H. A.; Tan, L. S.; Tamada, K.; Sander, M. S.; Knoll, W. J. Phys. Chem. B 2004, 108, 10812-10818.
22. Rong, G.; Nijmaie, A.; Sipe, J. E.; Weiss, S. M. Biosens. Bioelectron. 2008, 23, 1572-1576.
23. Fukuda, N.; Fujimaki, K.; Awazu, K.; Tamada, K.; Yase, K. Mater. Res. Symp. Proc. 2006, 900, 1-6, O12-39.
24. Kumar, P.; Choithani, J.; Gupta, K. C. Nucleic Acids Res. 2004, 32, e80.
25. Lorsch, J. R.; Szostak, J. W. Biochemistry 1994, 33, 973-982.
26. Rusconi, C. P.; Scardino, D.; Layzer, J.; Pitoc, G. A.; Ortel, T. L.; Monroe, D.; Sullenger, B. A. Nature 2002, 419, 90-94.
27. Sussman, D.; Nix, C. J.; Wilson, C. Nat. Struct. Biol. 2000, 7, 53-57.
28. Devanathan, S.; Walker, M. C.; Salamon, Z.; Tollin, G. J. Pharm. Biomed. Anal. 2004, 36, 711-719.